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IVF0020352 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0020352
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionReverse transcriptase
Genome locationchr09:7663735..7664278
RNA-Seq ExpressionIVF0020352
SyntenyIVF0020352
Gene Ontology termsGO:0090304 - nucleic acid metabolic process (biological process)
GO:0005488 - binding (molecular function)
GO:0016740 - transferase activity (molecular function)
InterPro domainsIPR043502 - DNA/RNA polymerase superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0031989.1 putative Retrotransposon protein [Cucumis melo var. makuwa]2.10e-7164.41Show/hide
Query:  FLTKYHAVLDCFNKEVVLRDPIKYEIKFVGDKN---------ARKLMKKGHTAYLEHVVDTRASRDDPSKVPIVCEYLDVFLEELSGFSPKREIEFEIKV
        FLTKYHA+ D  NKEVVLRDP K EIKF  DK          ARKLMK  H +YL HV++T A R+DPSKVPIVCEY+DVF +ELSG  P+REI+F I++
Subjt:  FLTKYHAVLDCFNKEVVLRDPIKYEIKFVGDKN---------ARKLMKKGHTAYLEHVVDTRASRDDPSKVPIVCEYLDVFLEELSGFSPKREIEFEIKV

Query:  ASWSTLISQIPYYMTPNKMKELKNQLEELIEKGYIRPNTSPWGAPVLFVKNKDGSMRLCIDYRQLDKVTIKNKYPLP
           +T ISQ PY M   ++KELKNQL+ELIEK YI+P TSPW AP+LF + +DGS+RLCIDYRQL+KVT+KNKYPLP
Subjt:  ASWSTLISQIPYYMTPNKMKELKNQLEELIEKGYIRPNTSPWGAPVLFVKNKDGSMRLCIDYRQLDKVTIKNKYPLP

KAA0040571.1 uncharacterized protein E6C27_scaffold262G001410 [Cucumis melo var. makuwa]1.22e-10389.41Show/hide
Query:  MAFLTKYHAVLDCFNKEVVLRDPIKYEIKFVGDKNARKLMKKGHTAYLEHVVDTRASRDDPSKVPIVCEYLDVFLEELSGFSPKREIEFEIKVASWSTLI
        MAFLTKYHAVLDCFNKE                  ARKLMKKGHTAYLEHVVDTRASRDDPSKVPIVCEYLDVFLEELSGFSPKREIEFEIKVASWSTLI
Subjt:  MAFLTKYHAVLDCFNKEVVLRDPIKYEIKFVGDKNARKLMKKGHTAYLEHVVDTRASRDDPSKVPIVCEYLDVFLEELSGFSPKREIEFEIKVASWSTLI

Query:  SQIPYYMTPNKMKELKNQLEELIEKGYIRPNTSPWGAPVLFVKNKDGSMRLCIDYRQLDKVTIKNKYPLP
        SQIPYYMTPNKMKELKNQLEELIEKGYIRPNTSPWGAPVLFVKNKDGSMRLCIDYRQLDKVTIKNKYPLP
Subjt:  SQIPYYMTPNKMKELKNQLEELIEKGYIRPNTSPWGAPVLFVKNKDGSMRLCIDYRQLDKVTIKNKYPLP

TYK02467.1 uncharacterized protein E5676_scaffold1738G00930 [Cucumis melo var. makuwa]1.53e-6562.72Show/hide
Query:  MAFLTKYHAVLDCFNKEVVLRDPIKYEIKFVGDKNARKLMKKGHTAYLEHVVDTRASRDDPSKVPIVCEYLDVFLEELSGFSPKREIEFEIKVASWSTLI
        M FLTKYH +LDC NKEVVLR+  K+E+K+             HTAYL HV+DT+  + D   VPIVCEYLDVF EELS  + K EIE  I V   +T I
Subjt:  MAFLTKYHAVLDCFNKEVVLRDPIKYEIKFVGDKNARKLMKKGHTAYLEHVVDTRASRDDPSKVPIVCEYLDVFLEELSGFSPKREIEFEIKVASWSTLI

Query:  SQIPYYMTPNKMKELKNQLEELIEKGYIRPNTSPWGAPVLFVKNKDGSMRLCIDYRQLDKVTIKNKYPL
        SQ PY M P+++KELK+QLEEL+EKG I+P+T PWG P+LFVK KDGSMRLCIDYRQL+KVTIKNKYPL
Subjt:  SQIPYYMTPNKMKELKNQLEELIEKGYIRPNTSPWGAPVLFVKNKDGSMRLCIDYRQLDKVTIKNKYPL

VVA39362.1 PREDICTED: reverse mRNAase, partial [Prunus dulcis]4.12e-5956.73Show/hide
Query:  MAFLTKYHAVLDCFNKEVVLRDPIKYEIKFVGDK-NARKLMKKGHTAYLEHVVDTRASRDDPSKVPIVCEYLDVFLEELSGFSPKREIEFEIKVASWSTL
        M +LTK+HA +DCF KEVVLR P + E+ F G+   A++L++KG + YL HVVDTR        +P+V ++ DVF ++L G  P REIEF I++   ++ 
Subjt:  MAFLTKYHAVLDCFNKEVVLRDPIKYEIKFVGDK-NARKLMKKGHTAYLEHVVDTRASRDDPSKVPIVCEYLDVFLEELSGFSPKREIEFEIKVASWSTL

Query:  ISQIPYYMTPNKMKELKNQLEELIEKGYIRPNTSPWGAPVLFVKNKDGSMRLCIDYRQLDKVTIKNKYPLP
        ISQ PY M P ++KELK QL+EL++KG+IRP+ SPWGAPVLFVK KDG+MRLC+DYRQL+KVT++NKYPLP
Subjt:  ISQIPYYMTPNKMKELKNQLEELIEKGYIRPNTSPWGAPVLFVKNKDGSMRLCIDYRQLDKVTIKNKYPLP

WP_217833159.1 hypothetical protein, partial [Synechococcus sp. PCC 7002]3.03e-6157.46Show/hide
Query:  MAFLTKYHAVLDCFNKEVVLRDPIKYEIKFVGDKN-----------ARKLMKKGHTAYLEHVVDTRASRDDPSKVPIVCEYLDVFLEELSGFSPKREIEF
        M FL+KY A +DCF KEVV +     E+ F GD+            A KL+ KG  AYL HV++ +  +  P  VPIV E+LDVF EELSG  P RE+EF
Subjt:  MAFLTKYHAVLDCFNKEVVLRDPIKYEIKFVGDKN-----------ARKLMKKGHTAYLEHVVDTRASRDDPSKVPIVCEYLDVFLEELSGFSPKREIEF

Query:  EIKVASWSTLISQIPYYMTPNKMKELKNQLEELIEKGYIRPNTSPWGAPVLFVKNKDGSMRLCIDYRQLDKVTIKNKYPLP
         I +   +T ISQ PY M P+++KELK QL+EL++KGYIRP+ SPWGAPVLFVK KDG+MRLCIDYRQL+KVTI NKYPLP
Subjt:  EIKVASWSTLISQIPYYMTPNKMKELKNQLEELIEKGYIRPNTSPWGAPVLFVKNKDGSMRLCIDYRQLDKVTIKNKYPLP

TrEMBL top hitse value%identityAlignment
A0A5A7T6K3 DNA/RNA polymerases superfamily protein1.7e-4854.7Show/hide
Query:  MAFLTKYHAVLDCFNKEVVLRDPIKYEIKFVGDK-----------NARKLMKKGHTAYLEHVVDTRASRDDPSKVPIVCEYLDVFLEELSGFSPKREIEF
        M FL  ++A +DC  KEVV R P   E+ F G +            A KL++KG TA+L H+V  +  +  P  VP+V E+LDVFL++LSG  P REIEF
Subjt:  MAFLTKYHAVLDCFNKEVVLRDPIKYEIKFVGDK-----------NARKLMKKGHTAYLEHVVDTRASRDDPSKVPIVCEYLDVFLEELSGFSPKREIEF

Query:  EIKVASWSTLISQIPYYMTPNKMKELKNQLEELIEKGYIRPNTSPWGAPVLFVKNKDGSMRLCIDYRQLDKVTIKNKYPLP
         I++   +  IS+ PY MTP+++KELK QL+EL++KGYIRP+ SPWGAPVLFVK KDG++RLCIDYRQL+KVTI+NKYPLP
Subjt:  EIKVASWSTLISQIPYYMTPNKMKELKNQLEELIEKGYIRPNTSPWGAPVLFVKNKDGSMRLCIDYRQLDKVTIKNKYPLP

A0A5D3BSQ2 Uncharacterized protein1.7e-5162.72Show/hide
Query:  MAFLTKYHAVLDCFNKEVVLRDPIKYEIKFVGDKNARKLMKKGHTAYLEHVVDTRASRDDPSKVPIVCEYLDVFLEELSGFSPKREIEFEIKVASWSTLI
        M FLTKYH +LDC NKEVVLR+  K+E+K+             HTAYL HV+DT+  + D   VPIVCEYLDVF EELS  + K EIE  I V   +T I
Subjt:  MAFLTKYHAVLDCFNKEVVLRDPIKYEIKFVGDKNARKLMKKGHTAYLEHVVDTRASRDDPSKVPIVCEYLDVFLEELSGFSPKREIEFEIKVASWSTLI

Query:  SQIPYYMTPNKMKELKNQLEELIEKGYIRPNTSPWGAPVLFVKNKDGSMRLCIDYRQLDKVTIKNKYPL
        SQ PY M P+++KELK+QLEEL+EKG I+P+T PWG P+LFVK KDGSMRLCIDYRQL+KVTIKNKYPL
Subjt:  SQIPYYMTPNKMKELKNQLEELIEKGYIRPNTSPWGAPVLFVKNKDGSMRLCIDYRQLDKVTIKNKYPL

A0A5D3C2T7 Uncharacterized protein2.2e-8089.41Show/hide
Query:  MAFLTKYHAVLDCFNKEVVLRDPIKYEIKFVGDKNARKLMKKGHTAYLEHVVDTRASRDDPSKVPIVCEYLDVFLEELSGFSPKREIEFEIKVASWSTLI
        MAFLTKYHAVLDCFNKE                  ARKLMKKGHTAYLEHVVDTRASRDDPSKVPIVCEYLDVFLEELSGFSPKREIEFEIKVASWSTLI
Subjt:  MAFLTKYHAVLDCFNKEVVLRDPIKYEIKFVGDKNARKLMKKGHTAYLEHVVDTRASRDDPSKVPIVCEYLDVFLEELSGFSPKREIEFEIKVASWSTLI

Query:  SQIPYYMTPNKMKELKNQLEELIEKGYIRPNTSPWGAPVLFVKNKDGSMRLCIDYRQLDKVTIKNKYPLP
        SQIPYYMTPNKMKELKNQLEELIEKGYIRPNTSPWGAPVLFVKNKDGSMRLCIDYRQLDKVTIKNKYPLP
Subjt:  SQIPYYMTPNKMKELKNQLEELIEKGYIRPNTSPWGAPVLFVKNKDGSMRLCIDYRQLDKVTIKNKYPLP

A0A5D3D2P1 Putative Retrotransposon protein5.3e-5864.41Show/hide
Query:  FLTKYHAVLDCFNKEVVLRDPIKYEIKFVGDK---------NARKLMKKGHTAYLEHVVDTRASRDDPSKVPIVCEYLDVFLEELSGFSPKREIEFEIKV
        FLTKYHA+ D  NKEVVLRDP K EIKF  DK          ARKLMK  H +YL HV++T A R+DPSKVPIVCEY+DVF +ELSG  P+REI+F I++
Subjt:  FLTKYHAVLDCFNKEVVLRDPIKYEIKFVGDK---------NARKLMKKGHTAYLEHVVDTRASRDDPSKVPIVCEYLDVFLEELSGFSPKREIEFEIKV

Query:  ASWSTLISQIPYYMTPNKMKELKNQLEELIEKGYIRPNTSPWGAPVLFVKNKDGSMRLCIDYRQLDKVTIKNKYPLP
           +T ISQ PY M   ++KELKNQL+ELIEK YI+P TSPW AP+LF + +DGS+RLCIDYRQL+KVT+KNKYPLP
Subjt:  ASWSTLISQIPYYMTPNKMKELKNQLEELIEKGYIRPNTSPWGAPVLFVKNKDGSMRLCIDYRQLDKVTIKNKYPLP

A0A5E4GII1 PREDICTED: reverse mRNAase (Fragment)5.3e-5056.73Show/hide
Query:  MAFLTKYHAVLDCFNKEVVLRDPIKYEIKFVGD-KNARKLMKKGHTAYLEHVVDTRASRDDPSKVPIVCEYLDVFLEELSGFSPKREIEFEIKVASWSTL
        M +LTK+HA +DCF KEVVLR P + E+ F G+   A++L++KG + YL HVVDTR        +P+V ++ DVF ++L G  P REIEF I++   ++ 
Subjt:  MAFLTKYHAVLDCFNKEVVLRDPIKYEIKFVGD-KNARKLMKKGHTAYLEHVVDTRASRDDPSKVPIVCEYLDVFLEELSGFSPKREIEFEIKVASWSTL

Query:  ISQIPYYMTPNKMKELKNQLEELIEKGYIRPNTSPWGAPVLFVKNKDGSMRLCIDYRQLDKVTIKNKYPLP
        ISQ PY M P ++KELK QL+EL++KG+IRP+ SPWGAPVLFVK KDG+MRLC+DYRQL+KVT++NKYPLP
Subjt:  ISQIPYYMTPNKMKELKNQLEELIEKGYIRPNTSPWGAPVLFVKNKDGSMRLCIDYRQLDKVTIKNKYPLP

SwissProt top hitse value%identityAlignment
P0CT41 Transposon Tf2-12 polyprotein2.3e-1029.2Show/hide
Query:  DPSKVPIVCEYLDVFLEELSGFSPK--REIEFEIKVASWSTLISQIPYYMTPNKMKELKNQLEELIEKGYIRPNTSPWGAPVLFVKNKDGSMRLCIDYRQ
        +P    I  E+ D+  E  +   PK  + +EFE+++   +  +    Y + P KM+ + +++ + ++ G IR + +    PV+FV  K+G++R+ +DY+ 
Subjt:  DPSKVPIVCEYLDVFLEELSGFSPK--REIEFEIKVASWSTLISQIPYYMTPNKMKELKNQLEELIEKGYIRPNTSPWGAPVLFVKNKDGSMRLCIDYRQ

Query:  LDKVTIKNKYPLP
        L+K    N YPLP
Subjt:  LDKVTIKNKYPLP

Q7LHG5 Transposon Ty3-I Gag-Pol polyprotein4.2e-1235.71Show/hide
Query:  IEFEIKVASWSTLISQIPYYMTPNKMKELKNQLEELIEKGYIRPNTSPWGAPVLFVKNKDGSMRLCIDYRQLDKVTIKNKYPLP
        ++ +I++   + L    PY++T    +E+   +++L++  +I P+ SP  +PV+ V  KDG+ RLC+DYR L+K TI + +PLP
Subjt:  IEFEIKVASWSTLISQIPYYMTPNKMKELKNQLEELIEKGYIRPNTSPWGAPVLFVKNKDGSMRLCIDYRQLDKVTIKNKYPLP

Q8I7P9 Retrovirus-related Pol polyprotein from transposon opus1.8e-1023.95Show/hide
Query:  AVLDCFNKEVVLRDPIKYEIKFVGDKNARKLMKKGHTAYLEHVVDTRASRDDPSKVPIVCEYLDVFLEELSGFSPKREIEFEIKVASWSTLISQIPYYMT
        A++D  N  +++   IK  +      N   L+   H    + ++++           ++ E+  +F   LSG S +  ++ EI+  +   + ++  Y   
Subjt:  AVLDCFNKEVVLRDPIKYEIKFVGDKNARKLMKKGHTAYLEHVVDTRASRDDPSKVPIVCEYLDVFLEELSGFSPKREIEFEIKVASWSTLISQIPYYMT

Query:  PNKMKELKNQLEELIEKGYIRPNTSPWGAPVLFVKNK-----DGSMRLCIDYRQLDKVTIKNKYPLP
         N   E++ Q++EL++ G IRP+ SP+ +P+  V  K     +   R+ +D+++L+ VTI + YP+P
Subjt:  PNKMKELKNQLEELIEKGYIRPNTSPWGAPVLFVKNK-----DGSMRLCIDYRQLDKVTIKNKYPLP

Q99315 Transposon Ty3-G Gag-Pol polyprotein4.2e-1235.71Show/hide
Query:  IEFEIKVASWSTLISQIPYYMTPNKMKELKNQLEELIEKGYIRPNTSPWGAPVLFVKNKDGSMRLCIDYRQLDKVTIKNKYPLP
        ++ +I++   + L    PY++T    +E+   +++L++  +I P+ SP  +PV+ V  KDG+ RLC+DYR L+K TI + +PLP
Subjt:  IEFEIKVASWSTLISQIPYYMTPNKMKELKNQLEELIEKGYIRPNTSPWGAPVLFVKNKDGSMRLCIDYRQLDKVTIKNKYPLP

Q9UR07 Transposon Tf2-11 polyprotein2.3e-1029.2Show/hide
Query:  DPSKVPIVCEYLDVFLEELSGFSPK--REIEFEIKVASWSTLISQIPYYMTPNKMKELKNQLEELIEKGYIRPNTSPWGAPVLFVKNKDGSMRLCIDYRQ
        +P    I  E+ D+  E  +   PK  + +EFE+++   +  +    Y + P KM+ + +++ + ++ G IR + +    PV+FV  K+G++R+ +DY+ 
Subjt:  DPSKVPIVCEYLDVFLEELSGFSPK--REIEFEIKVASWSTLISQIPYYMTPNKMKELKNQLEELIEKGYIRPNTSPWGAPVLFVKNKDGSMRLCIDYRQ

Query:  LDKVTIKNKYPLP
        L+K    N YPLP
Subjt:  LDKVTIKNKYPLP

Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTTTCCTCACCAAGTACCATGCAGTATTAGATTGCTTCAATAAGGAGGTAGTATTGAGAGACCCTATAAAATATGAAATTAAATTTGTAGGCGATAAGAACGCGAG
GAAGTTGATGAAGAAAGGGCATACTGCCTACCTTGAGCATGTGGTAGATACACGGGCATCGAGAGATGATCCAAGCAAAGTGCCTATAGTTTGTGAATATTTGGACGTAT
TTTTGGAAGAATTGAGTGGATTTTCGCCTAAGCGAGAAATCGAGTTTGAAATCAAAGTTGCATCTTGGTCCACACTAATTTCTCAAATCCCCTATTACATGACACCAAAC
AAAATGAAGGAATTGAAGAATCAGTTAGAGGAGTTGATAGAGAAGGGCTACATTCGACCCAATACCTCACCATGGGGAGCCCCTGTTCTATTTGTAAAGAATAAGGATGG
ATCAATGAGATTGTGCATTGACTACCGCCAATTGGACAAAGTAACAATCAAGAATAAGTACCCTTTGCCGTGA
mRNA sequenceShow/hide mRNA sequence
ATGGCTTTCCTCACCAAGTACCATGCAGTATTAGATTGCTTCAATAAGGAGGTAGTATTGAGAGACCCTATAAAATATGAAATTAAATTTGTAGGCGATAAGAACGCGAG
GAAGTTGATGAAGAAAGGGCATACTGCCTACCTTGAGCATGTGGTAGATACACGGGCATCGAGAGATGATCCAAGCAAAGTGCCTATAGTTTGTGAATATTTGGACGTAT
TTTTGGAAGAATTGAGTGGATTTTCGCCTAAGCGAGAAATCGAGTTTGAAATCAAAGTTGCATCTTGGTCCACACTAATTTCTCAAATCCCCTATTACATGACACCAAAC
AAAATGAAGGAATTGAAGAATCAGTTAGAGGAGTTGATAGAGAAGGGCTACATTCGACCCAATACCTCACCATGGGGAGCCCCTGTTCTATTTGTAAAGAATAAGGATGG
ATCAATGAGATTGTGCATTGACTACCGCCAATTGGACAAAGTAACAATCAAGAATAAGTACCCTTTGCCGTGA
Protein sequenceShow/hide protein sequence
MAFLTKYHAVLDCFNKEVVLRDPIKYEIKFVGDKNARKLMKKGHTAYLEHVVDTRASRDDPSKVPIVCEYLDVFLEELSGFSPKREIEFEIKVASWSTLISQIPYYMTPN
KMKELKNQLEELIEKGYIRPNTSPWGAPVLFVKNKDGSMRLCIDYRQLDKVTIKNKYPLP