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IVF0020366 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0020366
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
Genome locationchr07:15845263..15845697
RNA-Seq ExpressionIVF0020366
SyntenyIVF0020366
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0016021 - integral component of membrane (cellular component)
GO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR036875 - Zinc finger, CCHC-type superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0032827.1 putative retrotransposon protein [Cucumis melo var. makuwa]6.11e-3177.5Show/hide
Query:  QLHGMLKTAKLNIKSSSEVLMVQKGKNPKKRERDQGKGKEKVVVKASKVDALAVPRPRPKPKEPKPPKEGECYFCKKIEH
        +LHGMLKTA LNIKSS EVLMVQKGKN KKR  DQGKG  KV +K SKVDA  VPR RPKPKEPKPPKE ECY CK+I H
Subjt:  QLHGMLKTAKLNIKSSSEVLMVQKGKNPKKRERDQGKGKEKVVVKASKVDALAVPRPRPKPKEPKPPKEGECYFCKKIEH

KAA0056624.1 hypothetical protein E6C27_scaffold288G001440 [Cucumis melo var. makuwa]2.72e-6196.19Show/hide
Query:  LTQLHGMLKTAKLNIKSSSEVLMVQKGKNPKKRERDQGKGKEKVVVKASKVDALAVPRPRPKPKEPKPPKEGECYFCKKIEHWKRKCPLYLEELKKNKGS
        LTQLHGMLKTAKLNIK SSEVLMVQKGKNPKKRERDQGKGKEKVVVKASKVDALAVPR RPKPKEPKPPKEGECYFCKKIEHW RKCP+YLEELKKNKGS
Subjt:  LTQLHGMLKTAKLNIKSSSEVLMVQKGKNPKKRERDQGKGKEKVVVKASKVDALAVPRPRPKPKEPKPPKEGECYFCKKIEHWKRKCPLYLEELKKNKGS

Query:  IPSTS
        IPSTS
Subjt:  IPSTS

KAA0066495.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]5.41e-4773.87Show/hide
Query:  LRRVLTQLHGMLKTAKLNIKSSSEVLMVQKGKNPKKRERDQGKGKEKVVVKASKVDALAVPRPRPKPKEPKPPKEGECYFCKKIEHWKRKCPLYLEELKK
        +++ LT+LHGMLKT KLNIKSSS+VLM+QKGKNPKK+E DQGKGK KV VK SKVDA   PRPR K KEPKPPKEGE Y CKKI +WKR CPLYL+ LKK
Subjt:  LRRVLTQLHGMLKTAKLNIKSSSEVLMVQKGKNPKKRERDQGKGKEKVVVKASKVDALAVPRPRPKPKEPKPPKEGECYFCKKIEHWKRKCPLYLEELKK

Query:  NKGSIPSTSGT
        NK S+P TS T
Subjt:  NKGSIPSTSGT

TYK07553.1 putative retrotransposon protein [Cucumis melo var. makuwa]1.11e-61100Show/hide
Query:  TAKLNIKSSSEVLMVQKGKNPKKRERDQGKGKEKVVVKASKVDALAVPRPRPKPKEPKPPKEGECYFCKKIEHWKRKCPLYLEELKKNKGSIPSTSGT
        TAKLNIKSSSEVLMVQKGKNPKKRERDQGKGKEKVVVKASKVDALAVPRPRPKPKEPKPPKEGECYFCKKIEHWKRKCPLYLEELKKNKGSIPSTSGT
Subjt:  TAKLNIKSSSEVLMVQKGKNPKKRERDQGKGKEKVVVKASKVDALAVPRPRPKPKEPKPPKEGECYFCKKIEHWKRKCPLYLEELKKNKGSIPSTSGT

XP_016901775.1 PREDICTED: uncharacterized protein LOC107991397 [Cucumis melo]6.08e-4371.15Show/hide
Query:  LTQLHGMLKTAKLNIKSSSEVLMVQKGKNPKKRERDQGKGKEKVVVKASKVDALAVPRPRPKPKEPKPPKEGECYFCKKIEHWKRKCPLYLEELKKNKGS
        L++LHGM K AKLNIKS+ E+LM+QKGKNPK R +DQGKG EKVVVK SKVD    P+PR KPK+PKP KE ECY CKKI HW+R  PLYLEELK NKGS
Subjt:  LTQLHGMLKTAKLNIKSSSEVLMVQKGKNPKKRERDQGKGKEKVVVKASKVDALAVPRPRPKPKEPKPPKEGECYFCKKIEHWKRKCPLYLEELKKNKGS

Query:  IPST
        +P T
Subjt:  IPST

TrEMBL top hitse value%identityAlignment
A0A1S4E1A7 uncharacterized protein LOC1079913972.0e-3268.52Show/hide
Query:  LRRVLTQLHGMLKTAKLNIKSSSEVLMVQKGKNPKKRERDQGKGKEKVVVKASKVDALAVPRPRPKPKEPKPPKEGECYFCKKIEHWKRKCPLYLEELKK
        +++ L++LHGM K AKLNIKS+ E+LM+QKGKNPK R +DQGKG EKVVVK SKVD    P+PR KPK+PKP KE ECY CKKI HW+R  PLYLEELK 
Subjt:  LRRVLTQLHGMLKTAKLNIKSSSEVLMVQKGKNPKKRERDQGKGKEKVVVKASKVDALAVPRPRPKPKEPKPPKEGECYFCKKIEHWKRKCPLYLEELKK

Query:  NKGSIPST
        NKGS+P T
Subjt:  NKGSIPST

A0A5A7UN47 Uncharacterized protein4.3e-4892.66Show/hide
Query:  LRRVLTQLHGMLKTAKLNIKSSSEVLMVQKGKNPKKRERDQGKGKEKVVVKASKVDALAVPRPRPKPKEPKPPKEGECYFCKKIEHWKRKCPLYLEELKK
        + + LTQLHGMLKTAKLNIK SSEVLMVQKGKNPKKRERDQGKGKEKVVVKASKVDALAVPR RPKPKEPKPPKEGECYFCKKIEHW RKCP+YLEELKK
Subjt:  LRRVLTQLHGMLKTAKLNIKSSSEVLMVQKGKNPKKRERDQGKGKEKVVVKASKVDALAVPRPRPKPKEPKPPKEGECYFCKKIEHWKRKCPLYLEELKK

Query:  NKGSIPSTS
        NKGSIPSTS
Subjt:  NKGSIPSTS

A0A5A7VL77 Retrovirus-related Pol polyprotein from transposon TNT 1-942.9e-3673.87Show/hide
Query:  LRRVLTQLHGMLKTAKLNIKSSSEVLMVQKGKNPKKRERDQGKGKEKVVVKASKVDALAVPRPRPKPKEPKPPKEGECYFCKKIEHWKRKCPLYLEELKK
        +++ LT+LHGMLKT KLNIKSSS+VLM+QKGKNPKK+E DQGKGK KV VK SKVDA   PRPR K KEPKPPKEGE Y CKKI +WKR CPLYL+ LKK
Subjt:  LRRVLTQLHGMLKTAKLNIKSSSEVLMVQKGKNPKKRERDQGKGKEKVVVKASKVDALAVPRPRPKPKEPKPPKEGECYFCKKIEHWKRKCPLYLEELKK

Query:  NKGSIPSTSGT
        NK S+P TS T
Subjt:  NKGSIPSTSGT

A0A5D3C6L2 Putative retrotransposon protein8.2e-47100Show/hide
Query:  TAKLNIKSSSEVLMVQKGKNPKKRERDQGKGKEKVVVKASKVDALAVPRPRPKPKEPKPPKEGECYFCKKIEHWKRKCPLYLEELKKNKGSIPSTSGT
        TAKLNIKSSSEVLMVQKGKNPKKRERDQGKGKEKVVVKASKVDALAVPRPRPKPKEPKPPKEGECYFCKKIEHWKRKCPLYLEELKKNKGSIPSTSGT
Subjt:  TAKLNIKSSSEVLMVQKGKNPKKRERDQGKGKEKVVVKASKVDALAVPRPRPKPKEPKPPKEGECYFCKKIEHWKRKCPLYLEELKKNKGSIPSTSGT

A0A5D3CZL7 Putative polyprotein2.0e-3268.52Show/hide
Query:  LRRVLTQLHGMLKTAKLNIKSSSEVLMVQKGKNPKKRERDQGKGKEKVVVKASKVDALAVPRPRPKPKEPKPPKEGECYFCKKIEHWKRKCPLYLEELKK
        +++ L++LHGM K AKLNIKS+ E+LM+QKGKNPK R +DQGKG EKVVVK SKVD    P+PR KPK+PKP KE ECY CKKI HW+R  PLYLEELK 
Subjt:  LRRVLTQLHGMLKTAKLNIKSSSEVLMVQKGKNPKKRERDQGKGKEKVVVKASKVDALAVPRPRPKPKEPKPPKEGECYFCKKIEHWKRKCPLYLEELKK

Query:  NKGSIPST
        NKGS+P T
Subjt:  NKGSIPST

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGATTGAGAAGAGTTTTAACGCAACTGCATGGGATGCTGAAGACTGCAAAGTTGAACATCAAGTCCAGTTCTGAGGTTTTGATGGTGCAAAAGGGGAAGAATCCCAA
GAAAAGGGAACGCGACCAAGGAAAGGGTAAGGAAAAAGTTGTTGTCAAAGCATCAAAAGTTGATGCTCTTGCTGTACCTAGGCCGAGACCCAAACCTAAAGAGCCTAAGC
CACCCAAGGAAGGAGAATGTTATTTTTGCAAGAAAATTGAGCATTGGAAGAGGAAATGTCCTCTTTATTTGGAAGAACTGAAGAAAAACAAGGGAAGTATCCCTTCGACT
TCAGGGACTTAG
mRNA sequenceShow/hide mRNA sequence
ATGAGATTGAGAAGAGTTTTAACGCAACTGCATGGGATGCTGAAGACTGCAAAGTTGAACATCAAGTCCAGTTCTGAGGTTTTGATGGTGCAAAAGGGGAAGAATCCCAA
GAAAAGGGAACGCGACCAAGGAAAGGGTAAGGAAAAAGTTGTTGTCAAAGCATCAAAAGTTGATGCTCTTGCTGTACCTAGGCCGAGACCCAAACCTAAAGAGCCTAAGC
CACCCAAGGAAGGAGAATGTTATTTTTGCAAGAAAATTGAGCATTGGAAGAGGAAATGTCCTCTTTATTTGGAAGAACTGAAGAAAAACAAGGGAAGTATCCCTTCGACT
TCAGGGACTTAG
Protein sequenceShow/hide protein sequence
MRLRRVLTQLHGMLKTAKLNIKSSSEVLMVQKGKNPKKRERDQGKGKEKVVVKASKVDALAVPRPRPKPKEPKPPKEGECYFCKKIEHWKRKCPLYLEELKKNKGSIPST
SGT