CuGenDBv2

Gene ID	IVF0020377
Organism	Cucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	mediator of RNA polymerase II transcription subunit 30
Genome location	chr02:22886311..22888111
RNA-Seq Expression	IVF0020377
Synteny	IVF0020377
Gene Ontology terms	GO:0016592 - mediator complex (cellular component)
InterPro domains	IPR034568 - Mediator of RNA polymerase II transcription subunit 30

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

XP_004138044.1 mediator of RNA polymerase II transcription subunit 30 [Cucumis sativus]

2.29e-124

97.98

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Query:  MEEKSTTVLALPQTTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTATTATSGLTIASPNGPSSHSANGVVNGDASSESTSHHTDSSSGG
        MEEKST VLALPQTTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTATTATSGLTIASP+GPSSHSANGVVNGDASSESTSHHTDSS GG
Subjt:  MEEKSTTVLALPQTTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTATTATSGLTIASPNGPSSHSANGVVNGDASSESTSHHTDSSSGG

Query:  GSGSGGALEEARVRYKNSVLALRAILAAIPNSQKAKAYESGTSAHASPADQSEIDKLEQHLSNLRKELVVKNLHIKLLIDQLRDLVADVSTWQSPCSV
        GSGSGGALEEARVRYKNSVLALRAILAAIPNSQKAKAYESGTS HASPADQSEIDKLEQHLSNLRKELVVKNLHIKLLIDQLRDLVADVSTWQSPCSV
Subjt:  GSGSGGALEEARVRYKNSVLALRAILAAIPNSQKAKAYESGTSAHASPADQSEIDKLEQHLSNLRKELVVKNLHIKLLIDQLRDLVADVSTWQSPCSV

XP_008464424.1 PREDICTED: mediator of RNA polymerase II transcription subunit 30 [Cucumis melo]

4.12e-127

100

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Query:  MEEKSTTVLALPQTTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTATTATSGLTIASPNGPSSHSANGVVNGDASSESTSHHTDSSSGG
        MEEKSTTVLALPQTTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTATTATSGLTIASPNGPSSHSANGVVNGDASSESTSHHTDSSSGG
Subjt:  MEEKSTTVLALPQTTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTATTATSGLTIASPNGPSSHSANGVVNGDASSESTSHHTDSSSGG

Query:  GSGSGGALEEARVRYKNSVLALRAILAAIPNSQKAKAYESGTSAHASPADQSEIDKLEQHLSNLRKELVVKNLHIKLLIDQLRDLVADVSTWQSPCSV
        GSGSGGALEEARVRYKNSVLALRAILAAIPNSQKAKAYESGTSAHASPADQSEIDKLEQHLSNLRKELVVKNLHIKLLIDQLRDLVADVSTWQSPCSV
Subjt:  GSGSGGALEEARVRYKNSVLALRAILAAIPNSQKAKAYESGTSAHASPADQSEIDKLEQHLSNLRKELVVKNLHIKLLIDQLRDLVADVSTWQSPCSV

XP_022134927.1 mediator of RNA polymerase II transcription subunit 30 [Momordica charantia]

1.07e-110

87.88

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Query:  MEEKSTTVLALPQTTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTATTATSGLTIASPNGPSSHSANGVVNGDASSESTSHHTDSSSGG
        ME+K T++LALPQTTQELA+EGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTAT+A   L+IASPNGPS HS NGVVNGDASSEST+HH D+SSGG
Subjt:  MEEKSTTVLALPQTTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTATTATSGLTIASPNGPSSHSANGVVNGDASSESTSHHTDSSSGG

Query:  GSGSGGALEEARVRYKNSVLALRAILAAIPNSQKAKAYESGTSAHASPADQSEIDKLEQHLSNLRKELVVKNLHIKLLIDQLRDLVADVSTWQSPCSV
        G+GSGGALEEARVRY NSVLALRAILAAIP+SQ AKAYESGTS HASPADQSEIDKLEQHL NLRKELV KNLH+KLLIDQLRDLVAD+STWQSPCSV
Subjt:  GSGSGGALEEARVRYKNSVLALRAILAAIPNSQKAKAYESGTSAHASPADQSEIDKLEQHLSNLRKELVVKNLHIKLLIDQLRDLVADVSTWQSPCSV

XP_022921424.1 mediator of RNA polymerase II transcription subunit 30 [Cucurbita moschata]

1.21e-119

93.94

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Query:  MEEKSTTVLALPQTTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTATTATSGLTIASPNGPSSHSANGVVNGDASSESTSHHTDSSSGG
        MEEK T VL+LPQTTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTATT TSGLTIASPN PSSHS NGVVNGDASSEST+HHTD+SSGG
Subjt:  MEEKSTTVLALPQTTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTATTATSGLTIASPNGPSSHSANGVVNGDASSESTSHHTDSSSGG

Query:  GSGSGGALEEARVRYKNSVLALRAILAAIPNSQKAKAYESGTSAHASPADQSEIDKLEQHLSNLRKELVVKNLHIKLLIDQLRDLVADVSTWQSPCSV
        GSGSGGALEEARVRYKNSVLALRAILAAIPNSQKAKA+ESGTS HASPADQSEIDKLEQHLSNLRKEL+VKNLHIKLLIDQLR+LVADVSTWQSPCSV
Subjt:  GSGSGGALEEARVRYKNSVLALRAILAAIPNSQKAKAYESGTSAHASPADQSEIDKLEQHLSNLRKELVVKNLHIKLLIDQLRDLVADVSTWQSPCSV

XP_038879540.1 mediator of RNA polymerase II transcription subunit 30 [Benincasa hispida]

1.60e-117

94.95

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Query:  MEEKSTTVLALPQTTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTATTATSGLTIASPNGPSSHSANGVVNGDASSESTSHHTDSSSGG
        MEEK T VLALPQTTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSST TTATSGL IASPNGPSSHS NGVVNGDASSESTSHHTDSSSGG
Subjt:  MEEKSTTVLALPQTTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTATTATSGLTIASPNGPSSHSANGVVNGDASSESTSHHTDSSSGG

Query:  GSGSGGALEEARVRYKNSVLALRAILAAIPNSQKAKAYESGTSAHASPADQSEIDKLEQHLSNLRKELVVKNLHIKLLIDQLRDLVADVSTWQSPCSV
        GSGSGGALEEARVRYKNSVLALRAILAAIPNSQKA AYESGTS   SPADQSEIDKLEQHLS+LRKELVVKNLHIKLLIDQLRDLVADVSTWQSPCSV
Subjt:  GSGSGGALEEARVRYKNSVLALRAILAAIPNSQKAKAYESGTSAHASPADQSEIDKLEQHLSNLRKELVVKNLHIKLLIDQLRDLVADVSTWQSPCSV

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LNW4 Uncharacterized protein

6.3e-95

97.98

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Query:  MEEKSTTVLALPQTTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTATTATSGLTIASPNGPSSHSANGVVNGDASSESTSHHTDSSSGG
        MEEKST VLALPQTTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTATTATSGLTIASP+GPSSHSANGVVNGDASSESTSHHTDSS GG
Subjt:  MEEKSTTVLALPQTTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTATTATSGLTIASPNGPSSHSANGVVNGDASSESTSHHTDSSSGG

Query:  GSGSGGALEEARVRYKNSVLALRAILAAIPNSQKAKAYESGTSAHASPADQSEIDKLEQHLSNLRKELVVKNLHIKLLIDQLRDLVADVSTWQSPCSV
        GSGSGGALEEARVRYKNSVLALRAILAAIPNSQKAKAYESGTS HASPADQSEIDKLEQHLSNLRKELVVKNLHIKLLIDQLRDLVADVSTWQSPCSV
Subjt:  GSGSGGALEEARVRYKNSVLALRAILAAIPNSQKAKAYESGTSAHASPADQSEIDKLEQHLSNLRKELVVKNLHIKLLIDQLRDLVADVSTWQSPCSV

A0A1S3CMZ7 mediator of RNA polymerase II transcription subunit 30

5.2e-97

100

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Query:  MEEKSTTVLALPQTTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTATTATSGLTIASPNGPSSHSANGVVNGDASSESTSHHTDSSSGG
        MEEKSTTVLALPQTTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTATTATSGLTIASPNGPSSHSANGVVNGDASSESTSHHTDSSSGG
Subjt:  MEEKSTTVLALPQTTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTATTATSGLTIASPNGPSSHSANGVVNGDASSESTSHHTDSSSGG

Query:  GSGSGGALEEARVRYKNSVLALRAILAAIPNSQKAKAYESGTSAHASPADQSEIDKLEQHLSNLRKELVVKNLHIKLLIDQLRDLVADVSTWQSPCSV
        GSGSGGALEEARVRYKNSVLALRAILAAIPNSQKAKAYESGTSAHASPADQSEIDKLEQHLSNLRKELVVKNLHIKLLIDQLRDLVADVSTWQSPCSV
Subjt:  GSGSGGALEEARVRYKNSVLALRAILAAIPNSQKAKAYESGTSAHASPADQSEIDKLEQHLSNLRKELVVKNLHIKLLIDQLRDLVADVSTWQSPCSV

A0A5A7USU3 Mediator of RNA polymerase II transcription subunit 30

5.2e-97

100

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Query:  MEEKSTTVLALPQTTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTATTATSGLTIASPNGPSSHSANGVVNGDASSESTSHHTDSSSGG
        MEEKSTTVLALPQTTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTATTATSGLTIASPNGPSSHSANGVVNGDASSESTSHHTDSSSGG
Subjt:  MEEKSTTVLALPQTTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTATTATSGLTIASPNGPSSHSANGVVNGDASSESTSHHTDSSSGG

Query:  GSGSGGALEEARVRYKNSVLALRAILAAIPNSQKAKAYESGTSAHASPADQSEIDKLEQHLSNLRKELVVKNLHIKLLIDQLRDLVADVSTWQSPCSV
        GSGSGGALEEARVRYKNSVLALRAILAAIPNSQKAKAYESGTSAHASPADQSEIDKLEQHLSNLRKELVVKNLHIKLLIDQLRDLVADVSTWQSPCSV
Subjt:  GSGSGGALEEARVRYKNSVLALRAILAAIPNSQKAKAYESGTSAHASPADQSEIDKLEQHLSNLRKELVVKNLHIKLLIDQLRDLVADVSTWQSPCSV

A0A6J1E0F5 mediator of RNA polymerase II transcription subunit 30

2.5e-91

93.94

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Query:  MEEKSTTVLALPQTTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTATTATSGLTIASPNGPSSHSANGVVNGDASSESTSHHTDSSSGG
        MEEK T VL+LPQTTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTATT TSGLTIASPN PSSHS NGVVNGDASSEST+HHTD+SSGG
Subjt:  MEEKSTTVLALPQTTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTATTATSGLTIASPNGPSSHSANGVVNGDASSESTSHHTDSSSGG

Query:  GSGSGGALEEARVRYKNSVLALRAILAAIPNSQKAKAYESGTSAHASPADQSEIDKLEQHLSNLRKELVVKNLHIKLLIDQLRDLVADVSTWQSPCSV
        GSGSGGALEEARVRYKNSVLALRAILAAIPNSQKAKA+ESGTS HASPADQSEIDKLEQHLSNLRKEL+VKNLHIKLLIDQLR+LVADVSTWQSPCSV
Subjt:  GSGSGGALEEARVRYKNSVLALRAILAAIPNSQKAKAYESGTSAHASPADQSEIDKLEQHLSNLRKELVVKNLHIKLLIDQLRDLVADVSTWQSPCSV

A0A6J1JFZ2 mediator of RNA polymerase II transcription subunit 30

2.5e-91

93.94

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Query:  MEEKSTTVLALPQTTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTATTATSGLTIASPNGPSSHSANGVVNGDASSESTSHHTDSSSGG
        MEEK T VL+LPQTTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTATT TSGLTIASPN PSSHS NGVVNGDASSEST+HHTD+SSGG
Subjt:  MEEKSTTVLALPQTTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTATTATSGLTIASPNGPSSHSANGVVNGDASSESTSHHTDSSSGG

Query:  GSGSGGALEEARVRYKNSVLALRAILAAIPNSQKAKAYESGTSAHASPADQSEIDKLEQHLSNLRKELVVKNLHIKLLIDQLRDLVADVSTWQSPCSV
        GSGSGGALEEARVRYKNSVLALRAILAAIPNSQKAKA+ESGTS HASPADQSEIDKLEQHLSNLRKEL+VKNLHIKLLIDQLR+LVADVSTWQSPCSV
Subjt:  GSGSGGALEEARVRYKNSVLALRAILAAIPNSQKAKAYESGTSAHASPADQSEIDKLEQHLSNLRKELVVKNLHIKLLIDQLRDLVADVSTWQSPCSV

SwissProt top hits

e value

%identity

Alignment

Q9FMV4 Mediator of RNA polymerase II transcription subunit 30

1.4e-43

56.68

Show/hide

Query:  TTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTATTATSGLTIASPNGPSSHSANGVVNGDASSESTSHHTDSSSGGGSGSGG--ALEEA
        TTQELAMEG K LEETIE+AFQI+ +MNDELCNP+LWST++    T +S  T    NG +  SA+      A+ + TSHH++S+ GGG G  G   L+EA
Subjt:  TTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTATTATSGLTIASPNGPSSHSANGVVNGDASSESTSHHTDSSSGGGSGSGG--ALEEA

Query:  RVRYKNSVLALRAILAAIPNSQKAKAYESGTSAHASPADQSEIDKLEQHLSNLRKELVVKNLHIKLLIDQLRDLVADVSTWQSPCSV
         +RYKNSV +LRA+LAAIPNSQKAKA E   +   SP  + EI+KLE+   +LR E+  KN+H+K LID+LR+L+AD+STWQSPCSV
Subjt:  RVRYKNSVLALRAILAAIPNSQKAKAYESGTSAHASPADQSEIDKLEQHLSNLRKELVVKNLHIKLLIDQLRDLVADVSTWQSPCSV

Arabidopsis top hits

e value

%identity

Alignment

AT5G63480.1 unknown protein

1.0e-44

56.68

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Query:  TTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTATTATSGLTIASPNGPSSHSANGVVNGDASSESTSHHTDSSSGGGSGSGG--ALEEA
        TTQELAMEG K LEETIE+AFQI+ +MNDELCNP+LWST++    T +S  T    NG +  SA+      A+ + TSHH++S+ GGG G  G   L+EA
Subjt:  TTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTATTATSGLTIASPNGPSSHSANGVVNGDASSESTSHHTDSSSGGGSGSGG--ALEEA

Query:  RVRYKNSVLALRAILAAIPNSQKAKAYESGTSAHASPADQSEIDKLEQHLSNLRKELVVKNLHIKLLIDQLRDLVADVSTWQSPCSV
         +RYKNSV +LRA+LAAIPNSQKAKA E   +   SP  + EI+KLE+   +LR E+  KN+H+K LID+LR+L+AD+STWQSPCSV
Subjt:  RVRYKNSVLALRAILAAIPNSQKAKAYESGTSAHASPADQSEIDKLEQHLSNLRKELVVKNLHIKLLIDQLRDLVADVSTWQSPCSV

Sequences

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CDS sequence

Show/hide CDS sequence

ATGGAAGAGAAATCCACTACTGTTTTGGCTCTTCCCCAGACAACTCAAGAGCTTGCAATGGAGGGCATCAAGCATCTTGAAGAAACCATTGAATCCGCTTTCCAGATCCT
CTACTCCATGAATGACGAGCTCTGTAATCCCACATTATGGTCCACTACTTCTTCAACGGCAACCACGGCTACTTCTGGTTTAACAATTGCCAGTCCAAATGGTCCATCTT
CGCATTCTGCTAATGGGGTTGTAAACGGTGATGCTAGTTCCGAAAGCACTAGCCATCACACCGATTCCAGCAGCGGCGGAGGCAGCGGTAGTGGGGGAGCCCTTGAGGAG
GCACGTGTTCGCTACAAGAACTCAGTCCTTGCACTTCGTGCTATTCTTGCTGCAATCCCCAATTCTCAGAAGGCAAAAGCATACGAATCGGGTACGAGTGCTCATGCATC
GCCTGCAGACCAATCTGAAATTGATAAGTTGGAACAACACCTCTCTAATCTCAGAAAGGAACTTGTCGTTAAAAATTTGCATATCAAGCTTCTGATAGATCAACTACGAG
ATCTTGTTGCTGATGTATCTACGTGGCAAAGTCCTTGTTCTGTGTGA

mRNA sequence

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TGGGATTTCTCGATTACTAATGAGAATTAGGGTTTCATGAATATCACAAACTCAAGTGTGATTGAAAGTTGGAATTGTGAATTTTGAAGATTCCGAACTCTCTCCTTGTA
AATTCGGTGGATTTCCGAATGTAGTAGCATCACAGGAGCATCGATTTTTTCTTCTGGAAACGTATTATGGAAGAGAAATCCACTACTGTTTTGGCTCTTCCCCAGACAAC
TCAAGAGCTTGCAATGGAGGGCATCAAGCATCTTGAAGAAACCATTGAATCCGCTTTCCAGATCCTCTACTCCATGAATGACGAGCTCTGTAATCCCACATTATGGTCCA
CTACTTCTTCAACGGCAACCACGGCTACTTCTGGTTTAACAATTGCCAGTCCAAATGGTCCATCTTCGCATTCTGCTAATGGGGTTGTAAACGGTGATGCTAGTTCCGAA
AGCACTAGCCATCACACCGATTCCAGCAGCGGCGGAGGCAGCGGTAGTGGGGGAGCCCTTGAGGAGGCACGTGTTCGCTACAAGAACTCAGTCCTTGCACTTCGTGCTAT
TCTTGCTGCAATCCCCAATTCTCAGAAGGCAAAAGCATACGAATCGGGTACGAGTGCTCATGCATCGCCTGCAGACCAATCTGAAATTGATAAGTTGGAACAACACCTCT
CTAATCTCAGAAAGGAACTTGTCGTTAAAAATTTGCATATCAAGCTTCTGATAGATCAACTACGAGATCTTGTTGCTGATGTATCTACGTGGCAAAGTCCTTGTTCTGTG
TGAAAAAACGTGCTCGCTTTGACTTTTGAGTCTCCTCGCTAAATGAGCTGTTGAAGTTTTAATTGCGATGCTCTGTTTCTTGAAAAGATGAGTTGTTATTAGAACGTTTG
TTTGCATCTCTCTTCAATGAAAGTAGTGATTATACAAATTTGCCATTGTCCATAAA

Protein sequence

Show/hide protein sequence

MEEKSTTVLALPQTTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTATTATSGLTIASPNGPSSHSANGVVNGDASSESTSHHTDSSSGGGSGSGGALEE
ARVRYKNSVLALRAILAAIPNSQKAKAYESGTSAHASPADQSEIDKLEQHLSNLRKELVVKNLHIKLLIDQLRDLVADVSTWQSPCSV

IVF0020377 (gene) of Melon (IVF77) v1 genome