; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

IVF0020414 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0020414
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionDNA polymerase epsilon subunit C
Genome locationchr11:25064886..25067673
RNA-Seq ExpressionIVF0020414
SyntenyIVF0020414
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0005634 - nucleus (cellular component)
GO:0046982 - protein heterodimerization activity (molecular function)
InterPro domainsIPR009072 - Histone-fold


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0035335.1 DNA polymerase epsilon subunit C [Cucumis melo var. makuwa]7.40e-9589.84Show/hide
Query:  MASSKKSSTEAKGKEAGTSKPAPKAKTHNNARNSDKEISKKKKKKKKISISTNNGSVKDNEVLAVSPPGGSASEDDDAADEDKAETTSRKHKTSKSKKVK
        MASSKKSSTEAKGKEAGTSKPAPKAKTHNNARNSDKEISKKKKKKKKISISTNNGSVKDNEVLAVSPPGGSASEDDDAADEDKAETTSRKHKTSKSKKVK
Subjt:  MASSKKSSTEAKGKEAGTSKPAPKAKTHNNARNSDKEISKKKKKKKKISISTNNGSVKDNEVLAVSPPGGSASEDDDAADEDKAETTSRKHKTSKSKKVK

Query:  RNHAKEEDNGYAEEEEEEAEEKIYKFPMHRIKKIMRDE-----------ILI---CEMFLVQFCKDAYACCAQDRKKSLAYKHLSSV
        RNHAKEEDNGYAEEEEEEAEEKIYKFPMHRIKKIMRDE            L+    EMFLVQFCKDAYACCAQDRKKSLAYKHL +V
Subjt:  RNHAKEEDNGYAEEEEEEAEEKIYKFPMHRIKKIMRDE-----------ILI---CEMFLVQFCKDAYACCAQDRKKSLAYKHLSSV

XP_004149539.2 chromatin accessibility complex protein 1 isoform X1 [Cucumis sativus]2.15e-10584.82Show/hide
Query:  MASSKKSSTEAKGKEAGTSKPAPKAKTHNNARNSDKEISKKKKKKKKISIS--TNNGSVKDNEVLAVSPPGGSASEDDDAADEDKAETTSRKHKTSKSKK
        MASSKKSSTEAK KE GTSKP+PKAKTHNNARNSDK+ISKKKKKKKKISIS  TNNGSVKDN  LAVS PG SASED DAADEDKAETTSRK  TSKSKK
Subjt:  MASSKKSSTEAKGKEAGTSKPAPKAKTHNNARNSDKEISKKKKKKKKISIS--TNNGSVKDNEVLAVSPPGGSASEDDDAADEDKAETTSRKHKTSKSKK

Query:  VKRNHAKEEDNGYAEEEEEEAEEKIYKFPMHRIKKIMRDE-----------ILI---CEMFLVQFCKDAYACCAQDRKKSLAYKHLSSVVSKRKRYDFLS
        VKRNHAKEEDN YA EEE  AEEKIYKFPMHRIKKIMRDE            L+    EMFLVQFCKDAYACCAQDRKKSLAYKHLSSVVSKRKRYDFLS
Subjt:  VKRNHAKEEDNGYAEEEEEEAEEKIYKFPMHRIKKIMRDE-----------ILI---CEMFLVQFCKDAYACCAQDRKKSLAYKHLSSVVSKRKRYDFLS

Query:  DFVPEKLKFEDALKERSMAESGKD
        DFVPEKLKFEDALKERSMAESGKD
Subjt:  DFVPEKLKFEDALKERSMAESGKD

XP_008463933.1 PREDICTED: DNA polymerase epsilon subunit C [Cucumis melo]5.38e-12292.34Show/hide
Query:  MASSKKSSTEAKGKEAGTSKPAPKAKTHNNARNSDKEISKKKKKKKKISISTNNGSVKDNEVLAVSPPGGSASEDDDAADEDKAETTSRKHKTSKSKKVK
        MASSKKSSTEAKGKEAGTSKPAPKAKTHNNARNSDKEISKKKKKKKKISISTNNGSVKDNEVLAVSPPGGSASEDDDAADEDKAETTSRKHKTSKSKKVK
Subjt:  MASSKKSSTEAKGKEAGTSKPAPKAKTHNNARNSDKEISKKKKKKKKISISTNNGSVKDNEVLAVSPPGGSASEDDDAADEDKAETTSRKHKTSKSKKVK

Query:  RNHAKEEDNGYAEEEEEEAEEKIYKFPMHRIKKIMRDE-----------ILI---CEMFLVQFCKDAYACCAQDRKKSLAYKHLSSVVSKRKRYDFLSDF
        RNHAKEEDNGYAEEEEEEAEEKIYKFPMHRIKKIMRDE            L+    EMFLVQFCKDAYACCAQDRKKSLAYKHLSSVVSKRKRYDFLSDF
Subjt:  RNHAKEEDNGYAEEEEEEAEEKIYKFPMHRIKKIMRDE-----------ILI---CEMFLVQFCKDAYACCAQDRKKSLAYKHLSSVVSKRKRYDFLSDF

Query:  VPEKLKFEDALKERSMAESGKD
        VPEKLKFEDALKERSMAESGKD
Subjt:  VPEKLKFEDALKERSMAESGKD

XP_022986059.1 DNA polymerase epsilon subunit C-like isoform X1 [Cucurbita maxima]2.44e-8269.49Show/hide
Query:  MASSKKSSTEAKGKEAGTSKPAPKAKTHNN-------ARNSDKEISKKKKKKKKISISTNNGSVKDNEVLAVSPPGGSASEDDDAADEDKAETTSRKHKT
        MASSKKSS+EAK KEAGTSKPAPK KTHNN       AR  DK  SKKKK     +  T+NGSVK+NEVL +S PG         A+ED+ ETTS+   T
Subjt:  MASSKKSSTEAKGKEAGTSKPAPKAKTHNN-------ARNSDKEISKKKKKKKKISISTNNGSVKDNEVLAVSPPGGSASEDDDAADEDKAETTSRKHKT

Query:  SKSKKVKRNHAKEEDNGYAEEEEEE-------AEEKIYKFPMHRIKKIMRDE-----------ILI---CEMFLVQFCKDAYACCAQDRKKSLAYKHLSS
        SKSKKVKRNH K+E+NGYAEEEEEE       AEEKIYKFPM+RIKKIMRDE            L+    EMFLVQFCKDAYACCAQDRKKSLAYKHLSS
Subjt:  SKSKKVKRNHAKEEDNGYAEEEEEE-------AEEKIYKFPMHRIKKIMRDE-----------ILI---CEMFLVQFCKDAYACCAQDRKKSLAYKHLSS

Query:  VVSKRKRYDFLSDFVPEKLKFEDALKERSMAESGKD
        VV KRKRYDFLSDFVPEKLKFEDALKERSMAESGKD
Subjt:  VVSKRKRYDFLSDFVPEKLKFEDALKERSMAESGKD

XP_038902902.1 DNA polymerase epsilon subunit C [Benincasa hispida]2.42e-9577.93Show/hide
Query:  MASSKKSSTEAKGKEAGTSKPAPKAKTHNNARNSDKEISKKKKKKKKISISTNNGSVKDNEVLAVSPPGGSASEDDDAADEDKAETTSRKHKTSKSKKVK
        MASSKKSSTEAK KEAGTSKP PK KTHNNAR SDK+ S KKKKKKK  IST NGSVKDNE LA SPPG +++ ++  ADED+AETTS K  TSKSKKV+
Subjt:  MASSKKSSTEAKGKEAGTSKPAPKAKTHNNARNSDKEISKKKKKKKKISISTNNGSVKDNEVLAVSPPGGSASEDDDAADEDKAETTSRKHKTSKSKKVK

Query:  RNHAKEEDNGYAEEEEEEAEEKIYKFPMHRIKKIMRDE-----------ILI---CEMFLVQFCKDAYACCAQDRKKSLAYKHLSSVVSKRKRYDFLSDF
        RNH K+E+NGYA EEEEEAEEKIYKFPMHRIKKIMRDE            L+    EMFLVQFCKDAYACCAQDRKKSLAYKHLSSVV KRKRYDFLSDF
Subjt:  RNHAKEEDNGYAEEEEEEAEEKIYKFPMHRIKKIMRDE-----------ILI---CEMFLVQFCKDAYACCAQDRKKSLAYKHLSSVVSKRKRYDFLSDF

Query:  VPEKLKFEDALKERSMAESGKD
        VPEKLKFEDALKER+MAESGKD
Subjt:  VPEKLKFEDALKERSMAESGKD

TrEMBL top hitse value%identityAlignment
A0A0A0KCQ2 CBFD_NFYB_HMF domain-containing protein1.0e-8284.82Show/hide
Query:  MASSKKSSTEAKGKEAGTSKPAPKAKTHNNARNSDKEISKKKKKKKK--ISISTNNGSVKDNEVLAVSPPGGSASEDDDAADEDKAETTSRKHKTSKSKK
        MASSKKSSTEAK KE GTSKP+PKAKTHNNARNSDK+ISKKKKKKKK  ISISTNNGSVKDN  LAVS PG SASED DAADEDKAETTSRK  TSKSKK
Subjt:  MASSKKSSTEAKGKEAGTSKPAPKAKTHNNARNSDKEISKKKKKKKK--ISISTNNGSVKDNEVLAVSPPGGSASEDDDAADEDKAETTSRKHKTSKSKK

Query:  VKRNHAKEEDNGYAEEEEEEAEEKIYKFPMHRIKKIMRDE-----------ILI---CEMFLVQFCKDAYACCAQDRKKSLAYKHLSSVVSKRKRYDFLS
        VKRNHAKEEDN YA   EEEAEEKIYKFPMHRIKKIMRDE            L+    EMFLVQFCKDAYACCAQDRKKSLAYKHLSSVVSKRKRYDFLS
Subjt:  VKRNHAKEEDNGYAEEEEEEAEEKIYKFPMHRIKKIMRDE-----------ILI---CEMFLVQFCKDAYACCAQDRKKSLAYKHLSSVVSKRKRYDFLS

Query:  DFVPEKLKFEDALKERSMAESGKD
        DFVPEKLKFEDALKERSMAESGKD
Subjt:  DFVPEKLKFEDALKERSMAESGKD

A0A1S3CKU7 DNA polymerase epsilon subunit C3.0e-9592.34Show/hide
Query:  MASSKKSSTEAKGKEAGTSKPAPKAKTHNNARNSDKEISKKKKKKKKISISTNNGSVKDNEVLAVSPPGGSASEDDDAADEDKAETTSRKHKTSKSKKVK
        MASSKKSSTEAKGKEAGTSKPAPKAKTHNNARNSDKEISKKKKKKKKISISTNNGSVKDNEVLAVSPPGGSASEDDDAADEDKAETTSRKHKTSKSKKVK
Subjt:  MASSKKSSTEAKGKEAGTSKPAPKAKTHNNARNSDKEISKKKKKKKKISISTNNGSVKDNEVLAVSPPGGSASEDDDAADEDKAETTSRKHKTSKSKKVK

Query:  RNHAKEEDNGYAEEEEEEAEEKIYKFPMHRIKKIMRDE-----------ILI---CEMFLVQFCKDAYACCAQDRKKSLAYKHLSSVVSKRKRYDFLSDF
        RNHAKEEDNGYAEEEEEEAEEKIYKFPMHRIKKIMRDE            L+    EMFLVQFCKDAYACCAQDRKKSLAYKHLSSVVSKRKRYDFLSDF
Subjt:  RNHAKEEDNGYAEEEEEEAEEKIYKFPMHRIKKIMRDE-----------ILI---CEMFLVQFCKDAYACCAQDRKKSLAYKHLSSVVSKRKRYDFLSDF

Query:  VPEKLKFEDALKERSMAESGKD
        VPEKLKFEDALKERSMAESGKD
Subjt:  VPEKLKFEDALKERSMAESGKD

A0A5A7T1L3 DNA polymerase epsilon subunit C1.7e-7489.84Show/hide
Query:  MASSKKSSTEAKGKEAGTSKPAPKAKTHNNARNSDKEISKKKKKKKKISISTNNGSVKDNEVLAVSPPGGSASEDDDAADEDKAETTSRKHKTSKSKKVK
        MASSKKSSTEAKGKEAGTSKPAPKAKTHNNARNSDKEISKKKKKKKKISISTNNGSVKDNEVLAVSPPGGSASEDDDAADEDKAETTSRKHKTSKSKKVK
Subjt:  MASSKKSSTEAKGKEAGTSKPAPKAKTHNNARNSDKEISKKKKKKKKISISTNNGSVKDNEVLAVSPPGGSASEDDDAADEDKAETTSRKHKTSKSKKVK

Query:  RNHAKEEDNGYAEEEEEEAEEKIYKFPMHRIKKIMRDE-----------ILI---CEMFLVQFCKDAYACCAQDRKKSLAYKHLSSV
        RNHAKEEDNGYAEEEEEEAEEKIYKFPMHRIKKIMRDE            L+    EMFLVQFCKDAYACCAQDRKKSLAYKHL +V
Subjt:  RNHAKEEDNGYAEEEEEEAEEKIYKFPMHRIKKIMRDE-----------ILI---CEMFLVQFCKDAYACCAQDRKKSLAYKHLSSV

A0A6J1CGZ0 DNA polymerase epsilon subunit C1.8e-6369.7Show/hide
Query:  MASSKKSSTEAKGKEAGTSKPA------PKAKTHNNARNSDKEISKKKKKKKKISIS--TNNGSVKDNEVLAVSPPGGSASEDDDAADEDKAETTSRKHK
        MASSKKSSTEAK KEAGTSK A       K KT +NA  SDK++SKK   KKKIS     NNGS ++N+V  +S P  ++ EDD  ADED+ ETTSRK  
Subjt:  MASSKKSSTEAKGKEAGTSKPA------PKAKTHNNARNSDKEISKKKKKKKKISIS--TNNGSVKDNEVLAVSPPGGSASEDDDAADEDKAETTSRKHK

Query:  TSKSKKVKRNHAKEEDNGYAEEEEEE--AEEKIYKFPMHRIKKIMRDE-----------ILI---CEMFLVQFCKDAYACCAQDRKKSLAYKHLSSVVSK
        +SKSKKVKRNH K+E+NGY EEEEEE   EEKIYKFPMHRIKKI RDE            L+    EMFLVQFCKDAYACCAQDRKKSLAYKHLSSVV K
Subjt:  TSKSKKVKRNHAKEEDNGYAEEEEEE--AEEKIYKFPMHRIKKIMRDE-----------ILI---CEMFLVQFCKDAYACCAQDRKKSLAYKHLSSVVSK

Query:  RKRYDFLSDFVPEKLKFEDALKERSMAESGK
        RKRYDFLSDFVPEKLKFEDALKERSMAESGK
Subjt:  RKRYDFLSDFVPEKLKFEDALKERSMAESGK

A0A6J1JF10 DNA polymerase epsilon subunit C-like isoform X14.2e-6569.49Show/hide
Query:  MASSKKSSTEAKGKEAGTSKPAPKAKTH-------NNARNSDKEISKKKKKKKKISISTNNGSVKDNEVLAVSPPGGSASEDDDAADEDKAETTSRKHKT
        MASSKKSS+EAK KEAGTSKPAPK KTH       NNAR  DK  SKKKK     +  T+NGSVK+NEVL +S PG         A+ED+ ETTS+   T
Subjt:  MASSKKSSTEAKGKEAGTSKPAPKAKTH-------NNARNSDKEISKKKKKKKKISISTNNGSVKDNEVLAVSPPGGSASEDDDAADEDKAETTSRKHKT

Query:  SKSKKVKRNHAKEEDNGYAEEE-------EEEAEEKIYKFPMHRIKKIMRDE-----------ILI---CEMFLVQFCKDAYACCAQDRKKSLAYKHLSS
        SKSKKVKRNH K+E+NGYAEEE       EEEAEEKIYKFPM+RIKKIMRDE            L+    EMFLVQFCKDAYACCAQDRKKSLAYKHLSS
Subjt:  SKSKKVKRNHAKEEDNGYAEEE-------EEEAEEKIYKFPMHRIKKIMRDE-----------ILI---CEMFLVQFCKDAYACCAQDRKKSLAYKHLSS

Query:  VVSKRKRYDFLSDFVPEKLKFEDALKERSMAESGKD
        VV KRKRYDFLSDFVPEKLKFEDALKERSMAESGKD
Subjt:  VVSKRKRYDFLSDFVPEKLKFEDALKERSMAESGKD

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G07980.1 nuclear factor Y, subunit C105.9e-1132.74Show/hide
Query:  MASSKKSSTEAKGKEAGTSKPAPKAKTHNNAR----NSDKEISKKKKKKKKISISTNNGSVKDNEVLAVSPPGGSASEDDDAADEDKAETTSRKHKTSKS
        M SSKK   +    +   +K + ++K  + +R    ++   I KKK +  +IS S+++ SV++             +   D A +     + R +  S  
Subjt:  MASSKKSSTEAKGKEAGTSKPAPKAKTHNNAR----NSDKEISKKKKKKKKISISTNNGSVKDNEVLAVSPPGGSASEDDDAADEDKAETTSRKHKTSKS

Query:  KKVKRNHAKEEDNGYAEEEEEEAEEKIYKFPMHRIKKIMR----------DEILI----CEMFLVQFCKDAYACCAQDRKKSLAYKHLSSVVSKRKRYDF
           K +  +EED+G AE+ +        KFPM+RI++IMR          D + +     EMF+ +F ++AY    +D+KK + YKHLSSVVS  +RY+F
Subjt:  KKVKRNHAKEEDNGYAEEEEEEAEEKIYKFPMHRIKKIMR----------DEILI----CEMFLVQFCKDAYACCAQDRKKSLAYKHLSSVVSKRKRYDF

Query:  LSDFVPEKLKFEDALK--ERSMAESG
        L+D VPEKLK E AL+  ER M ++G
Subjt:  LSDFVPEKLKFEDALK--ERSMAESG


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCATCATCCAAAAAATCAAGTACCGAAGCGAAGGGCAAAGAAGCGGGAACCTCAAAGCCAGCCCCCAAAGCCAAGACCCACAACAATGCCAGAAATTCCGACAAGGA
AATCTCAAAGAAGAAGAAGAAGAAGAAGAAGATTAGCATTAGCACCAACAATGGCTCCGTCAAGGACAATGAGGTTTTAGCTGTTTCTCCTCCAGGAGGCTCAGCCTCTG
AGGACGACGATGCCGCCGATGAAGACAAAGCCGAAACCACAAGTAGAAAACATAAGACCTCCAAATCGAAGAAAGTTAAACGGAACCATGCCAAGGAAGAAGATAATGGT
TATGCCGAAGAAGAAGAAGAAGAAGCCGAGGAGAAGATTTATAAATTCCCTATGCATCGGATCAAGAAAATCATGAGGGATGAAATTCTGATTTGCGAGATGTTTCTTGT
ACAATTTTGCAAAGATGCATATGCATGCTGTGCTCAGGATCGCAAAAAGTCTCTTGCTTACAAGCATCTATCATCAGTAGTTTCCAAAAGGAAGAGATACGACTTTCTTT
CAGATTTTGTTCCAGAGAAGTTAAAATTCGAAGACGCCTTAAAGGAAAGAAGCATGGCAGAATCAGGAAAGGACTAA
mRNA sequenceShow/hide mRNA sequence
ATGGCATCATCCAAAAAATCAAGTACCGAAGCGAAGGGCAAAGAAGCGGGAACCTCAAAGCCAGCCCCCAAAGCCAAGACCCACAACAATGCCAGAAATTCCGACAAGGA
AATCTCAAAGAAGAAGAAGAAGAAGAAGAAGATTAGCATTAGCACCAACAATGGCTCCGTCAAGGACAATGAGGTTTTAGCTGTTTCTCCTCCAGGAGGCTCAGCCTCTG
AGGACGACGATGCCGCCGATGAAGACAAAGCCGAAACCACAAGTAGAAAACATAAGACCTCCAAATCGAAGAAAGTTAAACGGAACCATGCCAAGGAAGAAGATAATGGT
TATGCCGAAGAAGAAGAAGAAGAAGCCGAGGAGAAGATTTATAAATTCCCTATGCATCGGATCAAGAAAATCATGAGGGATGAAATTCTGATTTGCGAGATGTTTCTTGT
ACAATTTTGCAAAGATGCATATGCATGCTGTGCTCAGGATCGCAAAAAGTCTCTTGCTTACAAGCATCTATCATCAGTAGTTTCCAAAAGGAAGAGATACGACTTTCTTT
CAGATTTTGTTCCAGAGAAGTTAAAATTCGAAGACGCCTTAAAGGAAAGAAGCATGGCAGAATCAGGAAAGGACTAA
Protein sequenceShow/hide protein sequence
MASSKKSSTEAKGKEAGTSKPAPKAKTHNNARNSDKEISKKKKKKKKISISTNNGSVKDNEVLAVSPPGGSASEDDDAADEDKAETTSRKHKTSKSKKVKRNHAKEEDNG
YAEEEEEEAEEKIYKFPMHRIKKIMRDEILICEMFLVQFCKDAYACCAQDRKKSLAYKHLSSVVSKRKRYDFLSDFVPEKLKFEDALKERSMAESGKD