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IVF0020434 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0020434
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description60S ribosomal protein L39
Genome locationchr03:12886508..12887521
RNA-Seq ExpressionIVF0020434
SyntenyIVF0020434
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0022625 - cytosolic large ribosomal subunit (cellular component)
GO:0003729 - mRNA binding (molecular function)
GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domainsIPR000077 - Ribosomal protein L39e
IPR023626 - Ribosomal protein L39e domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
EOA28252.1 hypothetical protein CARUB_v10024445mg, partial [Capsella rubella]3.54e-1476Show/hide
Query:  HKSFRIKKKLGKKMRQNRPITHFIRLRNDNTIRYDFQARVLRFYRTKLGF
        HKSF IKKKLGKKMRQNRPI H+IRLR DNTIRY+ + R  R  RTKLGF
Subjt:  HKSFRIKKKLGKKMRQNRPITHFIRLRNDNTIRYDFQARVLRFYRTKLGF
KAG7637374.1 Ribosomal protein L39e domain superfamily, partial [Arabidopsis thaliana x Arabidopsis arenosa]3.82e-1476Show/hide
Query:  HKSFRIKKKLGKKMRQNRPITHFIRLRNDNTIRYDFQARVLRFYRTKLGF
        HKSF IKKKLGKKMRQNRPI H+IRLR DNTIRY+ + R  R  RTKLGF
Subjt:  HKSFRIKKKLGKKMRQNRPITHFIRLRNDNTIRYDFQARVLRFYRTKLGF
KAG7641985.1 Ribosomal protein L39e, partial [Arabidopsis suecica]3.92e-1476Show/hide
Query:  HKSFRIKKKLGKKMRQNRPITHFIRLRNDNTIRYDFQARVLRFYRTKLGF
        HKSF IKKKLGKKMRQNRPI H+IRLR DNTIRY+ + R  R  RTKLGF
Subjt:  HKSFRIKKKLGKKMRQNRPITHFIRLRNDNTIRYDFQARVLRFYRTKLGF
NP_567886.1 Ribosomal protein L39 family protein [Arabidopsis thaliana]1.86e-1476Show/hide
Query:  HKSFRIKKKLGKKMRQNRPITHFIRLRNDNTIRYDFQARVLRFYRTKLGF
        HKSF IKKKLGKKMRQNRPI H+IRLR DNTIRY+ + R  R  RTKLGF
Subjt:  HKSFRIKKKLGKKMRQNRPITHFIRLRNDNTIRYDFQARVLRFYRTKLGF
VVB10733.1 unnamed protein product [Arabis nemorensis]1.95e-1476Show/hide
Query:  HKSFRIKKKLGKKMRQNRPITHFIRLRNDNTIRYDFQARVLRFYRTKLGF
        HKSF IKKKLGKKMRQNRPI H+IRLR DNTIRY+ + R  R  RTKLGF
Subjt:  HKSFRIKKKLGKKMRQNRPITHFIRLRNDNTIRYDFQARVLRFYRTKLGF
TrEMBL top hitse value%identityAlignment
A0A087GRT4 Uncharacterized protein1.8e-0976Show/hide
Query:  HKSFRIKKKLGKKMRQNRPITHFIRLRNDNTIRYDFQARVLRFYRTKLGF
        HKSF IKKKLGKKMRQNRPI H+IRLR DNTIRY+ + R  R  RTKLGF
Subjt:  HKSFRIKKKLGKKMRQNRPITHFIRLRNDNTIRYDFQARVLRFYRTKLGF
A0A384L7C7 (thale cress) hypothetical protein1.8e-0976Show/hide
Query:  HKSFRIKKKLGKKMRQNRPITHFIRLRNDNTIRYDFQARVLRFYRTKLGF
        HKSF IKKKLGKKMRQNRPI H+IRLR DNTIRY+ + R  R  RTKLGF
Subjt:  HKSFRIKKKLGKKMRQNRPITHFIRLRNDNTIRYDFQARVLRFYRTKLGF
A0A565CAR9 Uncharacterized protein1.8e-0976Show/hide
Query:  HKSFRIKKKLGKKMRQNRPITHFIRLRNDNTIRYDFQARVLRFYRTKLGF
        HKSF IKKKLGKKMRQNRPI H+IRLR DNTIRY+ + R  R  RTKLGF
Subjt:  HKSFRIKKKLGKKMRQNRPITHFIRLRNDNTIRYDFQARVLRFYRTKLGF
R0FYV5 Uncharacterized protein (Fragment)1.8e-0976Show/hide
Query:  HKSFRIKKKLGKKMRQNRPITHFIRLRNDNTIRYDFQARVLRFYRTKLGF
        HKSF IKKKLGKKMRQNRPI H+IRLR DNTIRY+ + R  R  RTKLGF
Subjt:  HKSFRIKKKLGKKMRQNRPITHFIRLRNDNTIRYDFQARVLRFYRTKLGF
V4P3L1 Uncharacterized protein1.8e-0976Show/hide
Query:  HKSFRIKKKLGKKMRQNRPITHFIRLRNDNTIRYDFQARVLRFYRTKLGF
        HKSF IKKKLGKKMRQNRPI H+IRLR DNTIRY+ + R  R  RTKLGF
Subjt:  HKSFRIKKKLGKKMRQNRPITHFIRLRNDNTIRYDFQARVLRFYRTKLGF
SwissProt top hitse value%identityAlignment
P51424 60S ribosomal protein L39-14.9e-1276Show/hide
Query:  HKSFRIKKKLGKKMRQNRPITHFIRLRNDNTIRYDFQARVLRFYRTKLGF
        HKSF IKKKLGKKMRQNRPI H+IRLR DNTIRY+ + R  R  RTKLGF
Subjt:  HKSFRIKKKLGKKMRQNRPITHFIRLRNDNTIRYDFQARVLRFYRTKLGF
P51425 60S ribosomal protein L399.3e-1170Show/hide
Query:  HKSFRIKKKLGKKMRQNRPITHFIRLRNDNTIRYDFQARVLRFYRTKLGF
        HK+FRIKKKL KKMRQNRPI ++IR+R DNTIRY+ + R  R  RTKLGF
Subjt:  HKSFRIKKKLGKKMRQNRPITHFIRLRNDNTIRYDFQARVLRFYRTKLGF
P51426 60S ribosomal protein L39-29.3e-1170Show/hide
Query:  HKSFRIKKKLGKKMRQNRPITHFIRLRNDNTIRYDFQARVLRFYRTKLGF
        HK+FRIKKKL KKMRQNRPI ++IR+R DNTIRY+ + R  R  RTKLGF
Subjt:  HKSFRIKKKLGKKMRQNRPITHFIRLRNDNTIRYDFQARVLRFYRTKLGF
Q6KAJ8 60S ribosomal protein L39-19.3e-1170Show/hide
Query:  HKSFRIKKKLGKKMRQNRPITHFIRLRNDNTIRYDFQARVLRFYRTKLGF
        HK+FRIKKKL KKMRQNRPI ++IR+R DNTIRY+ + R  R  RTKLGF
Subjt:  HKSFRIKKKLGKKMRQNRPITHFIRLRNDNTIRYDFQARVLRFYRTKLGF
Q8L8W6 60S ribosomal protein L39-21.6e-1072Show/hide
Query:  HKSFRIKKKLGKKMRQNRPITHFIRLRNDNTIRYDFQARVLRFYRTKLGF
        HKSF IKKKLGKKMRQNRPI ++IRLR DN IRY+ + R  R  RTKLGF
Subjt:  HKSFRIKKKLGKKMRQNRPITHFIRLRNDNTIRYDFQARVLRFYRTKLGF
Arabidopsis top hitse value%identityAlignment
AT2G25210.1 Ribosomal protein L39 family protein9.6e-1175.56Show/hide
Query:  IKKKLGKKMRQNRPITHFIRLRNDNTIRYDFQARVLRFYRTKLGF
        IKKKLGKKMRQNRPI H+IRLR DNTIRY+ + R  R  RTKLGF
Subjt:  IKKKLGKKMRQNRPITHFIRLRNDNTIRYDFQARVLRFYRTKLGF
AT3G02190.1 Ribosomal protein L39 family protein1.1e-1172Show/hide
Query:  HKSFRIKKKLGKKMRQNRPITHFIRLRNDNTIRYDFQARVLRFYRTKLGF
        HKSF IKKKLGKKMRQNRPI ++IRLR DN IRY+ + R  R  RTKLGF
Subjt:  HKSFRIKKKLGKKMRQNRPITHFIRLRNDNTIRYDFQARVLRFYRTKLGF
AT4G31985.1 Ribosomal protein L39 family protein3.5e-1376Show/hide
Query:  HKSFRIKKKLGKKMRQNRPITHFIRLRNDNTIRYDFQARVLRFYRTKLGF
        HKSF IKKKLGKKMRQNRPI H+IRLR DNTIRY+ + R  R  RTKLGF
Subjt:  HKSFRIKKKLGKKMRQNRPITHFIRLRNDNTIRYDFQARVLRFYRTKLGF

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATACACAAGAGTTTTAGAATCAAAAAGAAGCTTGGGAAGAAGATGAGGCAGAATAGGCCGATCACGCACTTTATCCGCCTGAGAAATGACAACACGATCAGATACGA
CTTTCAAGCTAGGGTTCTTAGGTTCTATCGCACCAAGCTAGGGTTCTGA
mRNA sequenceShow/hide mRNA sequence
ATGATACACAAGAGTTTTAGAATCAAAAAGAAGCTTGGGAAGAAGATGAGGCAGAATAGGCCGATCACGCACTTTATCCGCCTGAGAAATGACAACACGATCAGATACGA
CTTTCAAGCTAGGGTTCTTAGGTTCTATCGCACCAAGCTAGGGTTCTGA
Protein sequenceShow/hide protein sequence
MIHKSFRIKKKLGKKMRQNRPITHFIRLRNDNTIRYDFQARVLRFYRTKLGF