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IVF0020441 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0020441
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionRetrotrans_gag domain-containing protein
Genome locationchr10:5333647..5334434
RNA-Seq ExpressionIVF0020441
SyntenyIVF0020441
Gene Ontology termsGO:0006259 - DNA metabolic process (biological process)
GO:0140640 - catalytic activity, acting on a nucleic acid (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0034022.1 girdin-like [Cucumis melo var. makuwa]2.54e-11284.58Show/hide
Query:  MEKKSSESFKEYAQRWRDMAAEVQPPLTDKEMTSMFMNTLRALFYNRMIGNATTNFSNIIVIGERIEYGIKHGRLAEATTEYGGIKKETISKKKEEEGQG
        MEKKSSESFKEYAQRWRDMAAEVQPPLTDKEMTS+                              IEYGIKHGRLAEATTEYGGIKKETISKKKEEEGQG
Subjt:  MEKKSSESFKEYAQRWRDMAAEVQPPLTDKEMTSMFMNTLRALFYNRMIGNATTNFSNIIVIGERIEYGIKHGRLAEATTEYGGIKKETISKKKEEEGQG

Query:  RKTNSDTWRFDPIPMTYTELLPQLIQNRQLAPIPMIPIQPPYSKWYDSNARCDYHARGAGQSTENCLTLKRNVQSLINAGWLSFKKFGEKPNVKENPLPN
        RKTNSDTWRFDPIPMTYTELLPQLIQNRQLAPIPMIPIQPPYSKWYDSNARCDYHARGAGQSTENCLTLKRNVQSLINAGWLSFKKFGEKPNVKENPLPN
Subjt:  RKTNSDTWRFDPIPMTYTELLPQLIQNRQLAPIPMIPIQPPYSKWYDSNARCDYHARGAGQSTENCLTLKRNVQSLINAGWLSFKKFGEKPNVKENPLPN

Query:  H
        H
Subjt:  H

KAA0036947.1 uncharacterized protein E6C27_scaffold86G00270 [Cucumis melo var. makuwa]1.21e-11179.2Show/hide
Query:  MEKKSSESFKEYAQRWRDMAAEVQPPLTDKEMTSMFMNTLRALFYNRMIGNATTNFSNIIVIGERIEYGIKHGRLAEATTEYGGIKKETISKKKEEE---
        MEKKSSESFKEYAQRWRDM AEVQPPLTDKEMTSMF+NTLRA FY RMIGNA+TNFS+IIVIGERIEYGIKHGRLAEATTEYGGIKK TISKKKE E   
Subjt:  MEKKSSESFKEYAQRWRDMAAEVQPPLTDKEMTSMFMNTLRALFYNRMIGNATTNFSNIIVIGERIEYGIKHGRLAEATTEYGGIKKETISKKKEEE---

Query:  ----------------------GQGRKTNSDTWRFDPIPMTYTELLPQLIQNRQLAPIPMIPIQPPYSKWYDSNARCDYHARGAGQSTENCLTLKRNVQS
                              GQG KTN DTW+FDPIPMTYTELLPQLIQNRQ+A IPMIPIQPPY KWYDSNARCDYHA G G STENCL LKRNVQS
Subjt:  ----------------------GQGRKTNSDTWRFDPIPMTYTELLPQLIQNRQLAPIPMIPIQPPYSKWYDSNARCDYHARGAGQSTENCLTLKRNVQS

Query:  LINAGWLSFKKFGEKPNVKENPLPNH
        LINAGWLSFKK G+KPNV ENPLP+H
Subjt:  LINAGWLSFKKFGEKPNVKENPLPNH

TYK23633.1 uncharacterized protein E5676_scaffold4336G00020 [Cucumis melo var. makuwa]1.13e-11067.8Show/hide
Query:  MEKKSSESFKEYAQRWRDMAAEVQPPLTDKEMTSMFMNTLRALFYNRMIGNATTNFSNIIVIGERIEYGIKHGRLAEATTEYGGIKKETISKKKEEE---
        MEKKSS+SFKEYAQRWRD+  EVQPPLTDKEMT +FMNTLRA FY RMIGNA+TNFS+IIVIGERIEYGIKHGRLAEATTEYGGIKK TISKKKE E   
Subjt:  MEKKSSESFKEYAQRWRDMAAEVQPPLTDKEMTSMFMNTLRALFYNRMIGNATTNFSNIIVIGERIEYGIKHGRLAEATTEYGGIKKETISKKKEEE---

Query:  ------------------------------------------------------------GQGRKTNSDTWRFDPIPMTYTELLPQLIQNRQLAPIPMIP
                                                                    GQG KTNSDTWRFDPIPMTYTELLPQLIQNRQLAPIPMIP
Subjt:  ------------------------------------------------------------GQGRKTNSDTWRFDPIPMTYTELLPQLIQNRQLAPIPMIP

Query:  IQPPYSKWYDSNARCDYHARGAGQSTENCLTLKRNVQSLINAGWLSFKKFGEKPNVKENPLPNH
        IQPPY KWYDSNARCDYHA G   STENCL LKRNVQ LINAGWLSFKK GEKPNVKENPLP+H
Subjt:  IQPPYSKWYDSNARCDYHARGAGQSTENCLTLKRNVQSLINAGWLSFKKFGEKPNVKENPLPNH

TYK27810.1 uncharacterized protein E5676_scaffold749G00390 [Cucumis melo var. makuwa]1.56e-11487.06Show/hide
Query:  MEKKSSESFKEYAQRWRDMAAEVQPPLTDKEMTSMFMNTLRALFYNRMIGNATTNFSNIIVIGERIEYGIKHGRLAEATTEYGGIKKETISKKKEEEGQG
        MEKKSS+SFKEYAQ WRDMAAEVQP LTDKEMTSMFMNTLRALFY RMIGNA+T FS+I VIGERIEY IKHGRL EATT+YGGIKK TISKKKE EGQG
Subjt:  MEKKSSESFKEYAQRWRDMAAEVQPPLTDKEMTSMFMNTLRALFYNRMIGNATTNFSNIIVIGERIEYGIKHGRLAEATTEYGGIKKETISKKKEEEGQG

Query:  RKTNSDTWRFDPIPMTYTELLPQLIQNRQLAPIPMIPIQPPYSKWYDSNARCDYHARGAGQSTENCLTLKRNVQSLINAGWLSFKKFGEKPNVKENPLPN
         KTNSDTWRFDPIPMTYTELLPQLIQNRQL+PIPMIPIQPPY KWYDSNARCDY A G   STEN L LKR VQSLINAGWLSFKK GEKPNV ENPLPN
Subjt:  RKTNSDTWRFDPIPMTYTELLPQLIQNRQLAPIPMIPIQPPYSKWYDSNARCDYHARGAGQSTENCLTLKRNVQSLINAGWLSFKKFGEKPNVKENPLPN

Query:  H
        H
Subjt:  H

XP_031737546.1 uncharacterized protein LOC116402435 [Cucumis sativus]1.42e-10782.59Show/hide
Query:  MEKKSSESFKEYAQRWRDMAAEVQPPLTDKEMTSMFMNTLRALFYNRMIGNATTNFSNIIVIGERIEYGIKHGRLAEATTEYGGIKKETISKKKEEEGQG
        MEKKSSESFKEYAQRWRD+AAEVQPPLTDKEMT MFMNTLRA FY+RMIGNATTNFS+IIVIGERIEYGIKHGRL E + EYGG+KK    KKKE  G+G
Subjt:  MEKKSSESFKEYAQRWRDMAAEVQPPLTDKEMTSMFMNTLRALFYNRMIGNATTNFSNIIVIGERIEYGIKHGRLAEATTEYGGIKKETISKKKEEEGQG

Query:  RKTNSDTWRFDPIPMTYTELLPQLIQNRQLAPIPMIPIQPPYSKWYDSNARCDYHARGAGQSTENCLTLKRNVQSLINAGWLSFKKFGEKPNVKENPLPN
         KTNS+T+RFDPIPMTYTELLPQL+ NRQLAPIP+ PIQPPY KWYD NARCDYHA G G STENCL LKR VQSLINAGWLSFKK GEKP+V  NPLPN
Subjt:  RKTNSDTWRFDPIPMTYTELLPQLIQNRQLAPIPMIPIQPPYSKWYDSNARCDYHARGAGQSTENCLTLKRNVQSLINAGWLSFKKFGEKPNVKENPLPN

Query:  H
        H
Subjt:  H

TrEMBL top hitse value%identityAlignment
A0A5A7T0H8 Uncharacterized protein2.1e-9068.94Show/hide
Query:  MEKKSSESFKEYAQRWRDMAAEVQPPLTDKEMTSMFMNTLRALFYNRMIGNATTNFSNIIVIGERIEYGIKHGRLAEATTEYGGIKKETISKKKEEE---
        +EKKSSESFKEYAQRWRDM AEVQPPLTDKEMTSMFMNTLRA FY RMIGNA+TNFS+IIVIGERIEYGIKHGRLAEATTEYGGIKK TISKKKE E   
Subjt:  MEKKSSESFKEYAQRWRDMAAEVQPPLTDKEMTSMFMNTLRALFYNRMIGNATTNFSNIIVIGERIEYGIKHGRLAEATTEYGGIKKETISKKKEEE---

Query:  ------------------------------------------------------------GQGRKTNSDTWRFDPIPMTYTELLPQLIQNRQLAPIPMIP
                                                                    GQG KTNSDTWRFDPIPMTYTELLPQLIQNRQLA IPMIP
Subjt:  ------------------------------------------------------------GQGRKTNSDTWRFDPIPMTYTELLPQLIQNRQLAPIPMIP

Query:  IQPPYSKWYDSNARCDYHARGAGQSTENCLTLKRNVQSLINAGWLSFKKFGEKPNVKENPLPNH
        IQPPY KWYDSNARCDYHA G G STENCL LKRNVQSLINAGWLSFKK GEK NV ENPLP+H
Subjt:  IQPPYSKWYDSNARCDYHARGAGQSTENCLTLKRNVQSLINAGWLSFKKFGEKPNVKENPLPNH

A0A5A7T1W2 Retrotrans_gag domain-containing protein1.3e-9069.58Show/hide
Query:  MEKKSSESFKEYAQRWRDMAAEVQPPLTDKEMTSMFMNTLRALFYNRMIGNATTNFSNIIVIGERIEYGIKHGRLAEATTEYGGIKKETISKKKEEE---
        MEKKSSESFKEYAQRWRDMAAEVQPPLTDKEMTSMFMNTLRA FY RMIGNA+TNFS+IIVIGERIEYGIKHGRLAEATTEYGGIKK TISKKKE E   
Subjt:  MEKKSSESFKEYAQRWRDMAAEVQPPLTDKEMTSMFMNTLRALFYNRMIGNATTNFSNIIVIGERIEYGIKHGRLAEATTEYGGIKKETISKKKEEE---

Query:  ------------------------------------------------------------GQGRKTNSDTWRFDPIPMTYTELLPQLIQNRQLAPIPMIP
                                                                    GQG KTNSDTWRFDPIPMTYTELLPQLIQNRQLA IPMIP
Subjt:  ------------------------------------------------------------GQGRKTNSDTWRFDPIPMTYTELLPQLIQNRQLAPIPMIP

Query:  IQPPYSKWYDSNARCDYHARGAGQSTENCLTLKRNVQSLINAGWLSFKKFGEKPNVKENPLPN
        IQPPY KWYDSNARCDYHA G G STENCL LKRNVQSLINAGWLSFKK GEK NV ENPLP+
Subjt:  IQPPYSKWYDSNARCDYHARGAGQSTENCLTLKRNVQSLINAGWLSFKKFGEKPNVKENPLPN

A0A5A7T5W2 Retrotrans_gag domain-containing protein7.1e-9479.2Show/hide
Query:  MEKKSSESFKEYAQRWRDMAAEVQPPLTDKEMTSMFMNTLRALFYNRMIGNATTNFSNIIVIGERIEYGIKHGRLAEATTEYGGIKKETISKKKEEE---
        MEKKSSESFKEYAQRWRDM AEVQPPLTDKEMTSMF+NTLRA FY RMIGNA+TNFS+IIVIGERIEYGIKHGRLAEATTEYGGIKK TISKKKE E   
Subjt:  MEKKSSESFKEYAQRWRDMAAEVQPPLTDKEMTSMFMNTLRALFYNRMIGNATTNFSNIIVIGERIEYGIKHGRLAEATTEYGGIKKETISKKKEEE---

Query:  ----------------------GQGRKTNSDTWRFDPIPMTYTELLPQLIQNRQLAPIPMIPIQPPYSKWYDSNARCDYHARGAGQSTENCLTLKRNVQS
                              GQG KTN DTW+FDPIPMTYTELLPQLIQNRQ+A IPMIPIQPPY KWYDSNARCDYHA G G STENCL LKRNVQS
Subjt:  ----------------------GQGRKTNSDTWRFDPIPMTYTELLPQLIQNRQLAPIPMIPIQPPYSKWYDSNARCDYHARGAGQSTENCLTLKRNVQS

Query:  LINAGWLSFKKFGEKPNVKENPLPNH
        LINAGWLSFKK G+KPNV ENPLP+H
Subjt:  LINAGWLSFKKFGEKPNVKENPLPNH

A0A5A7V3W7 Retrotrans_gag domain-containing protein1.9e-9168.94Show/hide
Query:  MEKKSSESFKEYAQRWRDMAAEVQPPLTDKEMTSMFMNTLRALFYNRMIGNATTNFSNIIVIGERIEYGIKHGRLAEATTEYGGIKKETISKKKEEE---
        MEKKSSESFKEYAQRW+DM AEVQPPLTDKEMTSMFMNTLRA FY RMIGNA+TNFS+IIVIGERIEYGIKHGRLAE TTEYGGIKK TISKKKE E   
Subjt:  MEKKSSESFKEYAQRWRDMAAEVQPPLTDKEMTSMFMNTLRALFYNRMIGNATTNFSNIIVIGERIEYGIKHGRLAEATTEYGGIKKETISKKKEEE---

Query:  ------------------------------------------------------------GQGRKTNSDTWRFDPIPMTYTELLPQLIQNRQLAPIPMIP
                                                                    GQG K NSDTWRFDPIPMTYTELLPQLIQNRQLAPIPMIP
Subjt:  ------------------------------------------------------------GQGRKTNSDTWRFDPIPMTYTELLPQLIQNRQLAPIPMIP

Query:  IQPPYSKWYDSNARCDYHARGAGQSTENCLTLKRNVQSLINAGWLSFKKFGEKPNVKENPLPNH
        IQPPY KWYDSNARCDYHA G G STENC  LKRNVQSLINAGWLSFKK GEKPNV ENPLPNH
Subjt:  IQPPYSKWYDSNARCDYHARGAGQSTENCLTLKRNVQSLINAGWLSFKKFGEKPNVKENPLPNH

A0A5D3DX42 Uncharacterized protein1.6e-9387.06Show/hide
Query:  MEKKSSESFKEYAQRWRDMAAEVQPPLTDKEMTSMFMNTLRALFYNRMIGNATTNFSNIIVIGERIEYGIKHGRLAEATTEYGGIKKETISKKKEEEGQG
        MEKKSS+SFKEYAQ WRDMAAEVQP LTDKEMTSMFMNTLRALFY RMIGNA+T FS+I VIGERIEY IKHGRL EATT+YGGIKK TISKKKE EGQG
Subjt:  MEKKSSESFKEYAQRWRDMAAEVQPPLTDKEMTSMFMNTLRALFYNRMIGNATTNFSNIIVIGERIEYGIKHGRLAEATTEYGGIKKETISKKKEEEGQG

Query:  RKTNSDTWRFDPIPMTYTELLPQLIQNRQLAPIPMIPIQPPYSKWYDSNARCDYHARGAGQSTENCLTLKRNVQSLINAGWLSFKKFGEKPNVKENPLPN
         KTNSDTWRFDPIPMTYTELLPQLIQNRQL+PIPMIPIQPPY KWYDSNARCDY A G   STEN L LKR VQSLINAGWLSFKK GEKPNV ENPLPN
Subjt:  RKTNSDTWRFDPIPMTYTELLPQLIQNRQLAPIPMIPIQPPYSKWYDSNARCDYHARGAGQSTENCLTLKRNVQSLINAGWLSFKKFGEKPNVKENPLPN

Query:  H
        H
Subjt:  H

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAAAAGAAGAGCTCAGAAAGCTTCAAAGAATATGCTCAACGATGGAGAGATATGGCAGCCGAGGTTCAGCCACCGTTAACAGACAAAGAAATGACATCTATGTTTAT
GAATACTTTGCGGGCTCTATTCTATAATCGAATGATTGGTAATGCAACAACTAATTTTTCTAACATTATTGTTATTGGCGAAAGAATTGAATATGGGATAAAACACGGGA
GGTTAGCAGAGGCTACAACTGAATATGGTGGAATAAAGAAAGAAACAATATCTAAGAAGAAAGAAGAAGAGGGTCAAGGTCGCAAGACCAATTCAGATACATGGCGGTTT
GATCCAATTCCCATGACTTATACAGAGCTTTTACCTCAGCTAATTCAAAATCGACAGTTAGCTCCTATTCCAATGATTCCTATACAACCTCCTTACTCAAAATGGTATGA
TTCAAATGCTCGATGTGATTATCATGCTCGAGGAGCGGGACAGTCAACTGAAAATTGTTTGACTTTGAAAAGAAATGTGCAATCTCTAATTAATGCTGGATGGTTAAGCT
TCAAAAAATTTGGTGAGAAGCCGAATGTCAAAGAAAATCCACTGCCTAATCATTGA
mRNA sequenceShow/hide mRNA sequence
ATGGAAAAGAAGAGCTCAGAAAGCTTCAAAGAATATGCTCAACGATGGAGAGATATGGCAGCCGAGGTTCAGCCACCGTTAACAGACAAAGAAATGACATCTATGTTTAT
GAATACTTTGCGGGCTCTATTCTATAATCGAATGATTGGTAATGCAACAACTAATTTTTCTAACATTATTGTTATTGGCGAAAGAATTGAATATGGGATAAAACACGGGA
GGTTAGCAGAGGCTACAACTGAATATGGTGGAATAAAGAAAGAAACAATATCTAAGAAGAAAGAAGAAGAGGGTCAAGGTCGCAAGACCAATTCAGATACATGGCGGTTT
GATCCAATTCCCATGACTTATACAGAGCTTTTACCTCAGCTAATTCAAAATCGACAGTTAGCTCCTATTCCAATGATTCCTATACAACCTCCTTACTCAAAATGGTATGA
TTCAAATGCTCGATGTGATTATCATGCTCGAGGAGCGGGACAGTCAACTGAAAATTGTTTGACTTTGAAAAGAAATGTGCAATCTCTAATTAATGCTGGATGGTTAAGCT
TCAAAAAATTTGGTGAGAAGCCGAATGTCAAAGAAAATCCACTGCCTAATCATTGA
Protein sequenceShow/hide protein sequence
MEKKSSESFKEYAQRWRDMAAEVQPPLTDKEMTSMFMNTLRALFYNRMIGNATTNFSNIIVIGERIEYGIKHGRLAEATTEYGGIKKETISKKKEEEGQGRKTNSDTWRF
DPIPMTYTELLPQLIQNRQLAPIPMIPIQPPYSKWYDSNARCDYHARGAGQSTENCLTLKRNVQSLINAGWLSFKKFGEKPNVKENPLPNH