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IVF0020450 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0020450
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionRetrotransposon protein
Genome locationchr03:19307160..19308160
RNA-Seq ExpressionIVF0020450
SyntenyIVF0020450
Gene Ontology termsGO:0046872 - metal ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0031678.1 retrotransposon protein [Cucumis melo var. makuwa]2.50e-17892.83Show/hide
Query:  MASSSRATKHAWTKEEEAKLVECLVELVSAGGWRSDNGTFRHGYLTQLQRMMAEKLPDTNIQGSPTIDCRVKSFKKTYQAIAEMRGPSCSAKGLLHKSFP
        MASSSRATKHAWTKEEEAKLVECLVELVSAGGWRSDNGTFRHGYLTQLQRMMAEKLPDTNIQGSPTIDCR                   +AKGLLHKSFP
Subjt:  MASSSRATKHAWTKEEEAKLVECLVELVSAGGWRSDNGTFRHGYLTQLQRMMAEKLPDTNIQGSPTIDCRVKSFKKTYQAIAEMRGPSCSAKGLLHKSFP

Query:  YYDDLSYVFGNDGATGAHSETFADGGSNVSNMFNDGVPLGDSHNQDILTIYSQGVHMSLDEIFGIRAGQASERRNYSSGSKRKRGSKHYEMVEVISSATE
        YYDDLSYVFGNDGATGAHSETFADGGSNVSNMFNDGVPLGDSHNQDILTIYSQGVHMSLDEIFGIRAGQASERRNYSSGSKRKRGSKHYEMVEVISSATE
Subjt:  YYDDLSYVFGNDGATGAHSETFADGGSNVSNMFNDGVPLGDSHNQDILTIYSQGVHMSLDEIFGIRAGQASERRNYSSGSKRKRGSKHYEMVEVISSATE

Query:  FGNDQLKTITDWPKEKRATEVELRTEVVKQLQDIPQLRSQDRAKLMQILFRSVEAIEGFLSIPTKLKLEYCNILLENNV
        FGNDQLKTITDWPKEKRATEVELRTEVVKQLQDIPQLRSQDRAKLMQILFRSVEAIEGFLSIPTKLKLEYCNILLENNV
Subjt:  FGNDQLKTITDWPKEKRATEVELRTEVVKQLQDIPQLRSQDRAKLMQILFRSVEAIEGFLSIPTKLKLEYCNILLENNV

KAA0033290.1 putative nuclease HARBI1 [Cucumis melo var. makuwa]4.21e-9281.18Show/hide
Query:  KGLLHKSFPYYDDLSYVFGNDGATGAHSETFADGGSNVSNMFNDGVPLGDSHNQDILTIYSQGVHMSLDEIFGIRAGQASERRNYSSGSKRKRGSKHYEM
        K LLHKSFPYYDDL YVFG D AT A SETFAD GSNV NMFN  VPL DSH+QDI  +YSQGVHMS DE+FGIRAGQASER+N SSGSKRK+GSKHYE 
Subjt:  KGLLHKSFPYYDDLSYVFGNDGATGAHSETFADGGSNVSNMFNDGVPLGDSHNQDILTIYSQGVHMSLDEIFGIRAGQASERRNYSSGSKRKRGSKHYEM

Query:  VEVISSATEFGNDQLKTITDWPKEKRATEVELRTEVVKQLQDIPQLRSQDRAKLMQILFRSVEAIEGFLSIPTKLKLEYCNILLEN
        VEVI SA EFGNDQLK I +WPKEKRATEVELR EV+KQLQDIP+L+S+DRAKL+QILFRSVEAIEGFLSIPT+ KLEYCNILL+N
Subjt:  VEVISSATEFGNDQLKTITDWPKEKRATEVELRTEVVKQLQDIPQLRSQDRAKLMQILFRSVEAIEGFLSIPTKLKLEYCNILLEN

KAA0035621.1 retrotransposon protein [Cucumis melo var. makuwa]1.90e-8548.51Show/hide
Query:  MASSSRATKHAWTKEEEAKLVECLVELVSAGGWRSDNGTFRHGYLTQLQRMMAEKLPDTNIQGSPTIDCRVKSFKKTYQAIAEMRGPSCS----------
        M SSSR  KH WTKEEEA LVECLVELV+AGGWRSDNGTFR GYL QL RMMA K+P +NI  S TID R+K  K+ + A+AEMRGP+CS          
Subjt:  MASSSRATKHAWTKEEEAKLVECLVELVSAGGWRSDNGTFRHGYLTQLQRMMAEKLPDTNIQGSPTIDCRVKSFKKTYQAIAEMRGPSCS----------

Query:  ---------------AKGLLHKSFPYYDDLSYVFGNDGATGAHSETFADGGSNVSNMFNDGVPLGDSHNQDILTIYSQGVHMSLDEIFGIRAGQASERRN
                       AKGLL+KSF +YD+LSYVFG D ATG  +E+FAD GSN    + D V      + D   +YS G++MS D++   R  + SERRN
Subjt:  ---------------AKGLLHKSFPYYDDLSYVFGNDGATGAHSETFADGGSNVSNMFNDGVPLGDSHNQDILTIYSQGVHMSLDEIFGIRAGQASERRN

Query:  YSSGSKRKRGSKHYEMVEVISSATEFGNDQLKTITDWPKEKRATEVELRTEVVKQLQDIPQLRSQDRAKLMQILFRSVEAIEGFLSIPTKLKLEYCNILL
         SSGSKRKR     +  +++ +A E+GN+QL  I +WP  +R    + R E+V+ L+ IP+L   DR +LM+IL R+V+ ++ FL +P  +K  YC+++L
Subjt:  YSSGSKRKRGSKHYEMVEVISSATEFGNDQLKTITDWPKEKRATEVELRTEVVKQLQDIPQLRSQDRAKLMQILFRSVEAIEGFLSIPTKLKLEYCNILL

Query:  ENN
        + N
Subjt:  ENN

KAA0042340.1 retrotransposon protein [Cucumis melo var. makuwa]8.02e-9276.6Show/hide
Query:  SAKGLLHKSFPYYDDLSYVFGNDGATGAHSETFADGGSNVSNMFNDGVPLGDSHNQDILTIYSQGVHMSLDEIFGIRAGQASERRNYSSGSKRKRGSKHY
        + KGLL+KSFPYYDD+SYVFG D AT A SETFAD GSN+ NMFNDGVPLGDSH++DI T+YSQGV MSLDE+FG RAGQASERRN SS SKRK+GS+HY
Subjt:  SAKGLLHKSFPYYDDLSYVFGNDGATGAHSETFADGGSNVSNMFNDGVPLGDSHNQDILTIYSQGVHMSLDEIFGIRAGQASERRNYSSGSKRKRGSKHY

Query:  EMVEVISSATEFGNDQLKTITDWPKEKRATEVELRTEVVKQLQDIPQLRSQDRAKLMQILFRSVEAIEGFLSIPTKLKLEYCNILLEN
        E VEVI SA +FGNDQLK I DW KEKRA +VELR  VVKQLQDIP+L+++DR K++QILF SVE IEGFLSIPT+LKLEYCN+LLEN
Subjt:  EMVEVISSATEFGNDQLKTITDWPKEKRATEVELRTEVVKQLQDIPQLRSQDRAKLMQILFRSVEAIEGFLSIPTKLKLEYCNILLEN

XP_008441954.1 PREDICTED: uncharacterized protein LOC103485953 [Cucumis melo]1.87e-15175.16Show/hide
Query:  MASSSRATKHAWTKEEEAKLVECLVELVSAGGWRSDNGTFRHGYLTQLQRMMAEKLPDTNIQGSPTIDCRVKSFKKTYQAIAEMRGPSCS----------
        MAS SRA KH WTKEEE K VECLVELVS+GGWRSDNGTF+ GYL QLQRMMAEKLP TNIQ S TIDC VKS KKTY AIAEMRGPSCS          
Subjt:  MASSSRATKHAWTKEEEAKLVECLVELVSAGGWRSDNGTFRHGYLTQLQRMMAEKLPDTNIQGSPTIDCRVKSFKKTYQAIAEMRGPSCS----------

Query:  -----------------AKGLLHKSFPYYDDLSYVFGNDGATGAHSETFADGGSNVSNMFNDGVPLGDSHNQDILTIYSQGVHMSLDEIFGIRAGQASER
                         AKGLLHKSFPYYDDLSYVFG D ATGA SETF + GSNVSNMFND +PLGDSH++DI T+YSQGVHMS DE+FGIRAGQASER
Subjt:  -----------------AKGLLHKSFPYYDDLSYVFGNDGATGAHSETFADGGSNVSNMFNDGVPLGDSHNQDILTIYSQGVHMSLDEIFGIRAGQASER

Query:  RNYSSGSKRKRGSKHYEMVEVISSATEFGNDQLKTITDWPKEKRATEVELRTEVVKQLQDIPQLRSQDRAKLMQILFRSVEAIEGFLSIPTKLKLEYCNI
        RN SS SKRKRGS+ YE VEVI S  EFGN+QLK I DWPKEKRA EVE+R +VVKQLQDIP+LRSQDRAKLMQILFRS+EAIEGFLSIPT+LKLEYCNI
Subjt:  RNYSSGSKRKRGSKHYEMVEVISSATEFGNDQLKTITDWPKEKRATEVELRTEVVKQLQDIPQLRSQDRAKLMQILFRSVEAIEGFLSIPTKLKLEYCNI

Query:  LLENNV
        LL+N V
Subjt:  LLENNV

TrEMBL top hitse value%identityAlignment
A0A1S3B4L3 uncharacterized protein LOC1034859531.4e-11975.16Show/hide
Query:  MASSSRATKHAWTKEEEAKLVECLVELVSAGGWRSDNGTFRHGYLTQLQRMMAEKLPDTNIQGSPTIDCRVKSFKKTYQAIAEMRGPSCS----------
        MAS SRA KH WTKEEE K VECLVELVS+GGWRSDNGTF+ GYL QLQRMMAEKLP TNIQ S TIDC VKS KKTY AIAEMRGPSCS          
Subjt:  MASSSRATKHAWTKEEEAKLVECLVELVSAGGWRSDNGTFRHGYLTQLQRMMAEKLPDTNIQGSPTIDCRVKSFKKTYQAIAEMRGPSCS----------

Query:  -----------------AKGLLHKSFPYYDDLSYVFGNDGATGAHSETFADGGSNVSNMFNDGVPLGDSHNQDILTIYSQGVHMSLDEIFGIRAGQASER
                         AKGLLHKSFPYYDDLSYVFG D ATGA SETF + GSNVSNMFND +PLGDSH++DI T+YSQGVHMS DE+FGIRAGQASER
Subjt:  -----------------AKGLLHKSFPYYDDLSYVFGNDGATGAHSETFADGGSNVSNMFNDGVPLGDSHNQDILTIYSQGVHMSLDEIFGIRAGQASER

Query:  RNYSSGSKRKRGSKHYEMVEVISSATEFGNDQLKTITDWPKEKRATEVELRTEVVKQLQDIPQLRSQDRAKLMQILFRSVEAIEGFLSIPTKLKLEYCNI
        RN SS SKRKRGS+ YE VEVI S  EFGN+QLK I DWPKEKRA EVE+R +VVKQLQDIP+LRSQDRAKLMQILFRS+EAIEGFLSIPT+LKLEYCNI
Subjt:  RNYSSGSKRKRGSKHYEMVEVISSATEFGNDQLKTITDWPKEKRATEVELRTEVVKQLQDIPQLRSQDRAKLMQILFRSVEAIEGFLSIPTKLKLEYCNI

Query:  LLENNV
        LL+N V
Subjt:  LLENNV

A0A5A7SQU2 Putative nuclease HARBI11.2e-7581.18Show/hide
Query:  KGLLHKSFPYYDDLSYVFGNDGATGAHSETFADGGSNVSNMFNDGVPLGDSHNQDILTIYSQGVHMSLDEIFGIRAGQASERRNYSSGSKRKRGSKHYEM
        K LLHKSFPYYDDL YVFG D AT A SETFAD GSNV NMFN  VPL DSH+QDI  +YSQGVHMS DE+FGIRAGQASER+N SSGSKRK+GSKHYE 
Subjt:  KGLLHKSFPYYDDLSYVFGNDGATGAHSETFADGGSNVSNMFNDGVPLGDSHNQDILTIYSQGVHMSLDEIFGIRAGQASERRNYSSGSKRKRGSKHYEM

Query:  VEVISSATEFGNDQLKTITDWPKEKRATEVELRTEVVKQLQDIPQLRSQDRAKLMQILFRSVEAIEGFLSIPTKLKLEYCNILLEN
        VEVI SA EFGNDQLK I +WPKEKRATEVELR EV+KQLQDIP+L+S+DRAKL+QILFRSVEAIEGFLSIPT+ KLEYCNILL+N
Subjt:  VEVISSATEFGNDQLKTITDWPKEKRATEVELRTEVVKQLQDIPQLRSQDRAKLMQILFRSVEAIEGFLSIPTKLKLEYCNILLEN

A0A5A7U0H7 Retrotransposon protein1.4e-11975.16Show/hide
Query:  MASSSRATKHAWTKEEEAKLVECLVELVSAGGWRSDNGTFRHGYLTQLQRMMAEKLPDTNIQGSPTIDCRVKSFKKTYQAIAEMRGPSCS----------
        MAS SRA KH WTKEEE K VECLVELVS+GGWRSDNGTF+ GYL QLQRMMAEKLP TNIQ S TIDC VKS KKTY AIAEMRGPSCS          
Subjt:  MASSSRATKHAWTKEEEAKLVECLVELVSAGGWRSDNGTFRHGYLTQLQRMMAEKLPDTNIQGSPTIDCRVKSFKKTYQAIAEMRGPSCS----------

Query:  -----------------AKGLLHKSFPYYDDLSYVFGNDGATGAHSETFADGGSNVSNMFNDGVPLGDSHNQDILTIYSQGVHMSLDEIFGIRAGQASER
                         AKGLLHKSFPYYDDLSYVFG D ATGA SETF + GSNVSNMFND +PLGDSH++DI T+YSQGVHMS DE+FGIRAGQASER
Subjt:  -----------------AKGLLHKSFPYYDDLSYVFGNDGATGAHSETFADGGSNVSNMFNDGVPLGDSHNQDILTIYSQGVHMSLDEIFGIRAGQASER

Query:  RNYSSGSKRKRGSKHYEMVEVISSATEFGNDQLKTITDWPKEKRATEVELRTEVVKQLQDIPQLRSQDRAKLMQILFRSVEAIEGFLSIPTKLKLEYCNI
        RN SS SKRKRGS+ YE VEVI S  EFGN+QLK I DWPKEKRA EVE+R +VVKQLQDIP+LRSQDRAKLMQILFRS+EAIEGFLSIPT+LKLEYCNI
Subjt:  RNYSSGSKRKRGSKHYEMVEVISSATEFGNDQLKTITDWPKEKRATEVELRTEVVKQLQDIPQLRSQDRAKLMQILFRSVEAIEGFLSIPTKLKLEYCNI

Query:  LLENNV
        LL+N V
Subjt:  LLENNV

A0A5D3BZU3 Retrotransposon protein2.0e-13992.83Show/hide
Query:  MASSSRATKHAWTKEEEAKLVECLVELVSAGGWRSDNGTFRHGYLTQLQRMMAEKLPDTNIQGSPTIDCRVKSFKKTYQAIAEMRGPSCSAKGLLHKSFP
        MASSSRATKHAWTKEEEAKLVECLVELVSAGGWRSDNGTFRHGYLTQLQRMMAEKLPDTNIQGSPTIDCR                   +AKGLLHKSFP
Subjt:  MASSSRATKHAWTKEEEAKLVECLVELVSAGGWRSDNGTFRHGYLTQLQRMMAEKLPDTNIQGSPTIDCRVKSFKKTYQAIAEMRGPSCSAKGLLHKSFP

Query:  YYDDLSYVFGNDGATGAHSETFADGGSNVSNMFNDGVPLGDSHNQDILTIYSQGVHMSLDEIFGIRAGQASERRNYSSGSKRKRGSKHYEMVEVISSATE
        YYDDLSYVFGNDGATGAHSETFADGGSNVSNMFNDGVPLGDSHNQDILTIYSQGVHMSLDEIFGIRAGQASERRNYSSGSKRKRGSKHYEMVEVISSATE
Subjt:  YYDDLSYVFGNDGATGAHSETFADGGSNVSNMFNDGVPLGDSHNQDILTIYSQGVHMSLDEIFGIRAGQASERRNYSSGSKRKRGSKHYEMVEVISSATE

Query:  FGNDQLKTITDWPKEKRATEVELRTEVVKQLQDIPQLRSQDRAKLMQILFRSVEAIEGFLSIPTKLKLEYCNILLENNV
        FGNDQLKTITDWPKEKRATEVELRTEVVKQLQDIPQLRSQDRAKLMQILFRSVEAIEGFLSIPTKLKLEYCNILLENNV
Subjt:  FGNDQLKTITDWPKEKRATEVELRTEVVKQLQDIPQLRSQDRAKLMQILFRSVEAIEGFLSIPTKLKLEYCNILLENNV

A0A5D3CVB7 Retrotransposon protein2.1e-7276.6Show/hide
Query:  SAKGLLHKSFPYYDDLSYVFGNDGATGAHSETFADGGSNVSNMFNDGVPLGDSHNQDILTIYSQGVHMSLDEIFGIRAGQASERRNYSSGSKRKRGSKHY
        + KGLL+KSFPYYDD+SYVFG D AT A SETFAD GSN+ NMFNDGVPLGDSH++DI T+YSQGV MSLDE+FG RAGQASERRN SS SKRK+GS+HY
Subjt:  SAKGLLHKSFPYYDDLSYVFGNDGATGAHSETFADGGSNVSNMFNDGVPLGDSHNQDILTIYSQGVHMSLDEIFGIRAGQASERRNYSSGSKRKRGSKHY

Query:  EMVEVISSATEFGNDQLKTITDWPKEKRATEVELRTEVVKQLQDIPQLRSQDRAKLMQILFRSVEAIEGFLSIPTKLKLEYCNILLEN
        E VEVI SA +FGNDQLK I DW KEKRA +VELR  VVKQLQDIP+L+++DR K++QILF SVE IEGFLSIPT+LKLEYCN+LLEN
Subjt:  EMVEVISSATEFGNDQLKTITDWPKEKRATEVELRTEVVKQLQDIPQLRSQDRAKLMQILFRSVEAIEGFLSIPTKLKLEYCNILLEN

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCAAGTTCGTCACGAGCAACGAAACACGCATGGACCAAAGAGGAAGAAGCAAAACTTGTTGAGTGTTTGGTGGAATTGGTTTCAGCTGGGGGATGGAGGTCCGATAA
TGGGACATTTCGACATGGGTACCTAACCCAATTACAACGAATGATGGCAGAGAAGTTGCCCGACACTAATATCCAAGGATCGCCGACAATAGATTGTCGTGTGAAATCTT
TTAAAAAAACCTACCAAGCAATTGCAGAAATGAGAGGACCATCATGTAGTGCCAAAGGTCTTCTACACAAATCATTTCCATATTATGATGATTTATCCTATGTCTTTGGT
AATGATGGGGCAACGGGAGCACATTCAGAGACCTTTGCTGATGGAGGATCTAATGTGTCGAACATGTTTAATGATGGTGTTCCCCTCGGTGATTCACATAATCAAGACAT
CCTGACGATTTATAGCCAAGGAGTGCATATGTCACTAGATGAGATATTTGGAATACGTGCAGGTCAAGCAAGTGAGAGAAGAAATTATTCAAGTGGAAGTAAGAGGAAAC
GAGGAAGCAAACATTATGAAATGGTAGAGGTTATCAGTAGTGCAACGGAATTTGGAAATGATCAATTAAAAACAATTACAGATTGGCCAAAAGAGAAGCGTGCAACAGAG
GTCGAATTGCGTACTGAAGTTGTGAAACAGCTGCAAGATATCCCTCAACTACGAAGCCAAGATAGGGCAAAGCTTATGCAAATCCTATTCCGTAGTGTGGAGGCCATTGA
GGGATTCTTGTCGATTCCAACGAAACTTAAATTGGAGTATTGCAATATTCTCTTAGAAAATAATGTTTGA
mRNA sequenceShow/hide mRNA sequence
ATGGCAAGTTCGTCACGAGCAACGAAACACGCATGGACCAAAGAGGAAGAAGCAAAACTTGTTGAGTGTTTGGTGGAATTGGTTTCAGCTGGGGGATGGAGGTCCGATAA
TGGGACATTTCGACATGGGTACCTAACCCAATTACAACGAATGATGGCAGAGAAGTTGCCCGACACTAATATCCAAGGATCGCCGACAATAGATTGTCGTGTGAAATCTT
TTAAAAAAACCTACCAAGCAATTGCAGAAATGAGAGGACCATCATGTAGTGCCAAAGGTCTTCTACACAAATCATTTCCATATTATGATGATTTATCCTATGTCTTTGGT
AATGATGGGGCAACGGGAGCACATTCAGAGACCTTTGCTGATGGAGGATCTAATGTGTCGAACATGTTTAATGATGGTGTTCCCCTCGGTGATTCACATAATCAAGACAT
CCTGACGATTTATAGCCAAGGAGTGCATATGTCACTAGATGAGATATTTGGAATACGTGCAGGTCAAGCAAGTGAGAGAAGAAATTATTCAAGTGGAAGTAAGAGGAAAC
GAGGAAGCAAACATTATGAAATGGTAGAGGTTATCAGTAGTGCAACGGAATTTGGAAATGATCAATTAAAAACAATTACAGATTGGCCAAAAGAGAAGCGTGCAACAGAG
GTCGAATTGCGTACTGAAGTTGTGAAACAGCTGCAAGATATCCCTCAACTACGAAGCCAAGATAGGGCAAAGCTTATGCAAATCCTATTCCGTAGTGTGGAGGCCATTGA
GGGATTCTTGTCGATTCCAACGAAACTTAAATTGGAGTATTGCAATATTCTCTTAGAAAATAATGTTTGA
Protein sequenceShow/hide protein sequence
MASSSRATKHAWTKEEEAKLVECLVELVSAGGWRSDNGTFRHGYLTQLQRMMAEKLPDTNIQGSPTIDCRVKSFKKTYQAIAEMRGPSCSAKGLLHKSFPYYDDLSYVFG
NDGATGAHSETFADGGSNVSNMFNDGVPLGDSHNQDILTIYSQGVHMSLDEIFGIRAGQASERRNYSSGSKRKRGSKHYEMVEVISSATEFGNDQLKTITDWPKEKRATE
VELRTEVVKQLQDIPQLRSQDRAKLMQILFRSVEAIEGFLSIPTKLKLEYCNILLENNV