; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

IVF0020523 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0020523
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionDNA-directed RNA polymerase subunit beta
Genome locationchr01:27278381..27279045
RNA-Seq ExpressionIVF0020523
SyntenyIVF0020523
Gene Ontology termsGO:0006351 - transcription, DNA-templated (biological process)
GO:0009507 - chloroplast (cellular component)
GO:0003677 - DNA binding (molecular function)
GO:0003899 - DNA-directed 5'-3' RNA polymerase activity (molecular function)
GO:0032549 - ribonucleoside binding (molecular function)
InterPro domainsIPR007120 - DNA-directed RNA polymerase, subunit 2, hybrid-binding domain
IPR007641 - RNA polymerase Rpb2, domain 7
IPR015712 - DNA-directed RNA polymerase, subunit 2
IPR037033 - DNA-directed RNA polymerase, subunit 2, hybrid-binding domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
AFS35502.1 RNA polymerase beta subunit, partial [Fragaria pentaphylla]2.39e-12985.52Show/hide
Query:  MPCLQNGRPVDMVFNPLRVPSQMNVGQIFECSLGLAGSLLDRHYRIVAFDERDEQEASRKPVFSELYEASKQTASPWVFEPEYPRKSRIFDGRTGNPFEQ
        MP LQ+GRPVDMVFNPL VPS+MNVGQIFECSLGLAG LLDRHYRI  FDER EQEASRK VFSELYEASKQTA+PWVFEPEYP KSRIFDGRTG+PFEQ
Subjt:  MPCLQNGRPVDMVFNPLRVPSQMNVGQIFECSLGLAGSLLDRHYRIVAFDERDEQEASRKPVFSELYEASKQTASPWVFEPEYPRKSRIFDGRTGNPFEQ

Query:  PIIIGKPYILKLIHQVDDKIHGHSSGHYALVTQQPLGGRAKQGGQRVGEMEVWALEGFGVAHILQEMLTYKSNHIR------------GTIPKPEDTPES
        P+IIGKPYILKLIHQVDDKIHG SSGHYALVTQQPL GRAKQGGQRVGEMEVWALEGFGVAHILQEMLTYKS+HIR            GTIPKP D PES
Subjt:  PIIIGKPYILKLIHQVDDKIHGHSSGHYALVTQQPLGGRAKQGGQRVGEMEVWALEGFGVAHILQEMLTYKSNHIR------------GTIPKPEDTPES

Query:  FQLLVRELQSLALELNHFLVS
        F+LLVREL+SLALELNHFLVS
Subjt:  FQLLVRELQSLALELNHFLVS

CAB4314294.1 unnamed protein product [Prunus armeniaca]4.29e-12985.97Show/hide
Query:  MPCLQNGRPVDMVFNPLRVPSQMNVGQIFECSLGLAGSLLDRHYRIVAFDERDEQEASRKPVFSELYEASKQTASPWVFEPEYPRKSRIFDGRTGNPFEQ
        MP LQ+GRPVDMVFNPL VPS+MNVGQIFECSLGLAG LLDRHYRI  FDER EQEASRK VFSELYEASKQTA+PWVFEPEYP KSRIFDGRTG+PFEQ
Subjt:  MPCLQNGRPVDMVFNPLRVPSQMNVGQIFECSLGLAGSLLDRHYRIVAFDERDEQEASRKPVFSELYEASKQTASPWVFEPEYPRKSRIFDGRTGNPFEQ

Query:  PIIIGKPYILKLIHQVDDKIHGHSSGHYALVTQQPLGGRAKQGGQRVGEMEVWALEGFGVAHILQEMLTYKSNHIR------------GTIPKPEDTPES
        P+IIGKPYILKLIHQVDDKIHG SSGHYALVTQQPL GRAKQGGQRVGEMEVWALEGFGVAHILQEMLTYKS+HIR            GTIPKPED PES
Subjt:  PIIIGKPYILKLIHQVDDKIHGHSSGHYALVTQQPLGGRAKQGGQRVGEMEVWALEGFGVAHILQEMLTYKSNHIR------------GTIPKPEDTPES

Query:  FQLLVRELQSLALELNHFLVS
        F+LLVREL+SLALELNHFLVS
Subjt:  FQLLVRELQSLALELNHFLVS

KAF3611721.1 hypothetical protein DY000_02045480 [Brassica cretica]1.16e-13085.97Show/hide
Query:  MPCLQNGRPVDMVFNPLRVPSQMNVGQIFECSLGLAGSLLDRHYRIVAFDERDEQEASRKPVFSELYEASKQTASPWVFEPEYPRKSRIFDGRTGNPFEQ
        MP LQ+GRPVDMVFNPL VPS+MNVGQIFECSLGLAGSLLDRHYRI  FDER EQEASRK VFSELYEASKQTA+PWVFEPEYP KSRIFDGRTG+PFEQ
Subjt:  MPCLQNGRPVDMVFNPLRVPSQMNVGQIFECSLGLAGSLLDRHYRIVAFDERDEQEASRKPVFSELYEASKQTASPWVFEPEYPRKSRIFDGRTGNPFEQ

Query:  PIIIGKPYILKLIHQVDDKIHGHSSGHYALVTQQPLGGRAKQGGQRVGEMEVWALEGFGVAHILQEMLTYKSNHIR------------GTIPKPEDTPES
        P+IIGKPYILKLIHQVDDKIHG SSGHYALVTQQPL GR+KQGGQRVGEMEVWALEGFGVAHILQEMLTYKS+HIR            GTIPKPED PES
Subjt:  PIIIGKPYILKLIHQVDDKIHGHSSGHYALVTQQPLGGRAKQGGQRVGEMEVWALEGFGVAHILQEMLTYKSNHIR------------GTIPKPEDTPES

Query:  FQLLVRELQSLALELNHFLVS
        F+LLVREL+SLALELNHFLVS
Subjt:  FQLLVRELQSLALELNHFLVS

KYP36767.1 DNA-directed RNA polymerase subunit beta [Cajanus cajan]1.23e-12885.07Show/hide
Query:  MPCLQNGRPVDMVFNPLRVPSQMNVGQIFECSLGLAGSLLDRHYRIVAFDERDEQEASRKPVFSELYEASKQTASPWVFEPEYPRKSRIFDGRTGNPFEQ
        MP LQ+GRPVDMVFNPL VPS+MNVGQIFECSLGLAG +LDRHYRI  FDER EQEASRK VFSELYEASKQTA+PW+FEPEYP KSRIFDGRTG+PFEQ
Subjt:  MPCLQNGRPVDMVFNPLRVPSQMNVGQIFECSLGLAGSLLDRHYRIVAFDERDEQEASRKPVFSELYEASKQTASPWVFEPEYPRKSRIFDGRTGNPFEQ

Query:  PIIIGKPYILKLIHQVDDKIHGHSSGHYALVTQQPLGGRAKQGGQRVGEMEVWALEGFGVAHILQEMLTYKSNHIR------------GTIPKPEDTPES
        P+IIGKPYILKLIHQVDDKIHG SSGHYALVTQQPL GRAKQGGQRVGEMEVWALEGFGVAHILQEMLTYKS+HIR            GTIPKPED PES
Subjt:  PIIIGKPYILKLIHQVDDKIHGHSSGHYALVTQQPLGGRAKQGGQRVGEMEVWALEGFGVAHILQEMLTYKSNHIR------------GTIPKPEDTPES

Query:  FQLLVRELQSLALELNHFLVS
        F+LLVREL+SLALELNHFLVS
Subjt:  FQLLVRELQSLALELNHFLVS

MBY3555949.1 DNA-directed RNA polymerase subunit beta [Modestobacter lapidis]4.79e-12785.52Show/hide
Query:  MPCLQNGRPVDMVFNPLRVPSQMNVGQIFECSLGLAGSLLDRHYRIVAFDERDEQEASRKPVFSELYEASKQTASPWVFEPEYPRKSRIFDGRTGNPFEQ
        MP LQ+GRPVDMVFNPL VPS+MNVGQIFECSLGLAG LLDRHYRI  FDER EQEASRK VFSELYEASKQTA+PWVFEPEYP KSRIFDGRTG+PFEQ
Subjt:  MPCLQNGRPVDMVFNPLRVPSQMNVGQIFECSLGLAGSLLDRHYRIVAFDERDEQEASRKPVFSELYEASKQTASPWVFEPEYPRKSRIFDGRTGNPFEQ

Query:  PIIIGKPYILKLIHQVDDKIHGHSSGHYALVTQQPLGGRAKQGGQRVGEMEVWALEGFGVAHILQEMLTYKSNHIR------------GTIPKPEDTPES
        P+IIGKPYILKLIHQVDDKIHG SSGHYALVTQQPL GRAKQGGQRVGEMEVWALEGFGVAHILQEMLTYKS+HIR            GTIP PED PES
Subjt:  PIIIGKPYILKLIHQVDDKIHGHSSGHYALVTQQPLGGRAKQGGQRVGEMEVWALEGFGVAHILQEMLTYKSNHIR------------GTIPKPEDTPES

Query:  FQLLVRELQSLALELNHFLVS
        F+LLVREL+SLALELNHFLVS
Subjt:  FQLLVRELQSLALELNHFLVS

TrEMBL top hitse value%identityAlignment
A0A0S2IE41 DNA-directed RNA polymerase subunit beta1.4e-10589.14Show/hide
Query:  MPCLQNGRPVDMVFNPLRVPSQMNVGQIFECSLGLAGSLLDRHYRIVAFDERDEQEASRKPVFSELYEASKQTASPWVFEPEYPRKSRIFDGRTGNPFEQ
        MP LQNGRPVDMVFNPL VPS+MNVGQIFECSLGLAGSLLDRHYRIV FDER EQEASRK VFSELYEASKQTASPWVFEPEYP KSRIFDGRTGNPFEQ
Subjt:  MPCLQNGRPVDMVFNPLRVPSQMNVGQIFECSLGLAGSLLDRHYRIVAFDERDEQEASRKPVFSELYEASKQTASPWVFEPEYPRKSRIFDGRTGNPFEQ

Query:  PIIIGKPYILKLIHQVDDKIHGHSSGHYALVTQQPLGGRAKQGGQRVGEMEVWALEGFGVAHILQEMLTYKSNHIR------------GTIPKPEDTPES
        P+IIGKPYILKLIHQVDDKIHG SSGHYALVTQQPL GRAKQGGQRVGEMEVWALEGFGVAHILQEMLTYKS+HIR            GTIPKPEDTPES
Subjt:  PIIIGKPYILKLIHQVDDKIHGHSSGHYALVTQQPLGGRAKQGGQRVGEMEVWALEGFGVAHILQEMLTYKSNHIR------------GTIPKPEDTPES

Query:  FQLLVRELQSLALELNHFLVS
        FQLLVREL+SLALELNHFLVS
Subjt:  FQLLVRELQSLALELNHFLVS

A0A0S2IFG3 DNA-directed RNA polymerase subunit beta1.4e-10589.14Show/hide
Query:  MPCLQNGRPVDMVFNPLRVPSQMNVGQIFECSLGLAGSLLDRHYRIVAFDERDEQEASRKPVFSELYEASKQTASPWVFEPEYPRKSRIFDGRTGNPFEQ
        MP LQNGRPVDMVFNPL VPS+MNVGQIFECSLGLAGSLLDRHYRIV FDER EQEASRK VFSELYEASKQTASPWVFEPEYP KSRIFDGRTGNPFEQ
Subjt:  MPCLQNGRPVDMVFNPLRVPSQMNVGQIFECSLGLAGSLLDRHYRIVAFDERDEQEASRKPVFSELYEASKQTASPWVFEPEYPRKSRIFDGRTGNPFEQ

Query:  PIIIGKPYILKLIHQVDDKIHGHSSGHYALVTQQPLGGRAKQGGQRVGEMEVWALEGFGVAHILQEMLTYKSNHIR------------GTIPKPEDTPES
        P+IIGKPYILKLIHQVDDKIHG SSGHYALVTQQPL GRAKQGGQRVGEMEVWALEGFGVAHILQEMLTYKS+HIR            GTIPKPEDTPES
Subjt:  PIIIGKPYILKLIHQVDDKIHGHSSGHYALVTQQPLGGRAKQGGQRVGEMEVWALEGFGVAHILQEMLTYKSNHIR------------GTIPKPEDTPES

Query:  FQLLVRELQSLALELNHFLVS
        FQLLVREL+SLALELNHFLVS
Subjt:  FQLLVRELQSLALELNHFLVS

A0A0S2IGH2 DNA-directed RNA polymerase subunit beta1.4e-10589.14Show/hide
Query:  MPCLQNGRPVDMVFNPLRVPSQMNVGQIFECSLGLAGSLLDRHYRIVAFDERDEQEASRKPVFSELYEASKQTASPWVFEPEYPRKSRIFDGRTGNPFEQ
        MP LQNGRPVDMVFNPL VPS+MNVGQIFECSLGLAGSLLDRHYRIV FDER EQEASRK VFSELYEASKQTASPWVFEPEYP KSRIFDGRTGNPFEQ
Subjt:  MPCLQNGRPVDMVFNPLRVPSQMNVGQIFECSLGLAGSLLDRHYRIVAFDERDEQEASRKPVFSELYEASKQTASPWVFEPEYPRKSRIFDGRTGNPFEQ

Query:  PIIIGKPYILKLIHQVDDKIHGHSSGHYALVTQQPLGGRAKQGGQRVGEMEVWALEGFGVAHILQEMLTYKSNHIR------------GTIPKPEDTPES
        P+IIGKPYILKLIHQVDDKIHG SSGHYALVTQQPL GRAKQGGQRVGEMEVWALEGFGVAHILQEMLTYKS+HIR            GTIPKPEDTPES
Subjt:  PIIIGKPYILKLIHQVDDKIHGHSSGHYALVTQQPLGGRAKQGGQRVGEMEVWALEGFGVAHILQEMLTYKSNHIR------------GTIPKPEDTPES

Query:  FQLLVRELQSLALELNHFLVS
        FQLLVREL+SLALELNHFLVS
Subjt:  FQLLVRELQSLALELNHFLVS

A0A0S2IHF1 DNA-directed RNA polymerase subunit beta1.4e-10589.14Show/hide
Query:  MPCLQNGRPVDMVFNPLRVPSQMNVGQIFECSLGLAGSLLDRHYRIVAFDERDEQEASRKPVFSELYEASKQTASPWVFEPEYPRKSRIFDGRTGNPFEQ
        MP LQNGRPVDMVFNPL VPS+MNVGQIFECSLGLAGSLLDRHYRIV FDER EQEASRK VFSELYEASKQTASPWVFEPEYP KSRIFDGRTGNPFEQ
Subjt:  MPCLQNGRPVDMVFNPLRVPSQMNVGQIFECSLGLAGSLLDRHYRIVAFDERDEQEASRKPVFSELYEASKQTASPWVFEPEYPRKSRIFDGRTGNPFEQ

Query:  PIIIGKPYILKLIHQVDDKIHGHSSGHYALVTQQPLGGRAKQGGQRVGEMEVWALEGFGVAHILQEMLTYKSNHIR------------GTIPKPEDTPES
        P+IIGKPYILKLIHQVDDKIHG SSGHYALVTQQPL GRAKQGGQRVGEMEVWALEGFGVAHILQEMLTYKS+HIR            GTIPKPEDTPES
Subjt:  PIIIGKPYILKLIHQVDDKIHGHSSGHYALVTQQPLGGRAKQGGQRVGEMEVWALEGFGVAHILQEMLTYKSNHIR------------GTIPKPEDTPES

Query:  FQLLVRELQSLALELNHFLVS
        FQLLVREL+SLALELNHFLVS
Subjt:  FQLLVRELQSLALELNHFLVS

A0A2H4T1Y0 DNA-directed RNA polymerase subunit beta1.4e-10589.14Show/hide
Query:  MPCLQNGRPVDMVFNPLRVPSQMNVGQIFECSLGLAGSLLDRHYRIVAFDERDEQEASRKPVFSELYEASKQTASPWVFEPEYPRKSRIFDGRTGNPFEQ
        MP LQNGRPVDMVFNPL VPS+MNVGQIFECSLGLAGSLLDRHYRIV FDER EQEASRK VFSELYEASKQTASPWVFEPEYP KSRIFDGRTGNPFEQ
Subjt:  MPCLQNGRPVDMVFNPLRVPSQMNVGQIFECSLGLAGSLLDRHYRIVAFDERDEQEASRKPVFSELYEASKQTASPWVFEPEYPRKSRIFDGRTGNPFEQ

Query:  PIIIGKPYILKLIHQVDDKIHGHSSGHYALVTQQPLGGRAKQGGQRVGEMEVWALEGFGVAHILQEMLTYKSNHIR------------GTIPKPEDTPES
        P+IIGKPYILKLIHQVDDKIHG SSGHYALVTQQPL GRAKQGGQRVGEMEVWALEGFGVAHILQEMLTYKS+HIR            GTIPKPEDTPES
Subjt:  PIIIGKPYILKLIHQVDDKIHGHSSGHYALVTQQPLGGRAKQGGQRVGEMEVWALEGFGVAHILQEMLTYKSNHIR------------GTIPKPEDTPES

Query:  FQLLVRELQSLALELNHFLVS
        FQLLVREL+SLALELNHFLVS
Subjt:  FQLLVRELQSLALELNHFLVS

SwissProt top hitse value%identityAlignment
A4QK10 DNA-directed RNA polymerase subunit beta9.0e-10585.97Show/hide
Query:  MPCLQNGRPVDMVFNPLRVPSQMNVGQIFECSLGLAGSLLDRHYRIVAFDERDEQEASRKPVFSELYEASKQTASPWVFEPEYPRKSRIFDGRTGNPFEQ
        MP LQ+GRPVDMVFNPL VPS+MNVGQIFECSLGLAGSLLDRHYRI  FDER EQEASRK VFSELYEASKQTA+PWVFEPEYP KSRIFDGRTG+PFEQ
Subjt:  MPCLQNGRPVDMVFNPLRVPSQMNVGQIFECSLGLAGSLLDRHYRIVAFDERDEQEASRKPVFSELYEASKQTASPWVFEPEYPRKSRIFDGRTGNPFEQ

Query:  PIIIGKPYILKLIHQVDDKIHGHSSGHYALVTQQPLGGRAKQGGQRVGEMEVWALEGFGVAHILQEMLTYKSNHIR------------GTIPKPEDTPES
        P+IIGKPYILKLIHQVDDKIHG SSGHYALVTQQPL GR+KQGGQRVGEMEVWALEGFGVAHILQEMLTYKS+HIR            GTIPKPED PES
Subjt:  PIIIGKPYILKLIHQVDDKIHGHSSGHYALVTQQPLGGRAKQGGQRVGEMEVWALEGFGVAHILQEMLTYKSNHIR------------GTIPKPEDTPES

Query:  FQLLVRELQSLALELNHFLVS
        F+LLVREL+SLALELNHFLVS
Subjt:  FQLLVRELQSLALELNHFLVS

A4QK97 DNA-directed RNA polymerase subunit beta9.0e-10585.97Show/hide
Query:  MPCLQNGRPVDMVFNPLRVPSQMNVGQIFECSLGLAGSLLDRHYRIVAFDERDEQEASRKPVFSELYEASKQTASPWVFEPEYPRKSRIFDGRTGNPFEQ
        MP LQ+GRPVDMVFNPL VPS+MNVGQIFECSLGLAGSLLDRHYRI  FDER EQEASRK VFSELYEASKQTA+PWVFEPEYP KSRIFDGRTG+PFEQ
Subjt:  MPCLQNGRPVDMVFNPLRVPSQMNVGQIFECSLGLAGSLLDRHYRIVAFDERDEQEASRKPVFSELYEASKQTASPWVFEPEYPRKSRIFDGRTGNPFEQ

Query:  PIIIGKPYILKLIHQVDDKIHGHSSGHYALVTQQPLGGRAKQGGQRVGEMEVWALEGFGVAHILQEMLTYKSNHIR------------GTIPKPEDTPES
        P+IIGKPYILKLIHQVDDKIHG SSGHYALVTQQPL GR+KQGGQRVGEMEVWALEGFGVAHILQEMLTYKS+HIR            GTIPKPED PES
Subjt:  PIIIGKPYILKLIHQVDDKIHGHSSGHYALVTQQPLGGRAKQGGQRVGEMEVWALEGFGVAHILQEMLTYKSNHIR------------GTIPKPEDTPES

Query:  FQLLVRELQSLALELNHFLVS
        F+LLVREL+SLALELNHFLVS
Subjt:  FQLLVRELQSLALELNHFLVS

A4QKI4 DNA-directed RNA polymerase subunit beta9.0e-10585.97Show/hide
Query:  MPCLQNGRPVDMVFNPLRVPSQMNVGQIFECSLGLAGSLLDRHYRIVAFDERDEQEASRKPVFSELYEASKQTASPWVFEPEYPRKSRIFDGRTGNPFEQ
        MP LQ+GRPVDMVFNPL VPS+MNVGQIFECSLGLAGSLLDRHYRI  FDER EQEASRK VFSELYEASKQTA+PWVFEPEYP KSRIFDGRTG+PFEQ
Subjt:  MPCLQNGRPVDMVFNPLRVPSQMNVGQIFECSLGLAGSLLDRHYRIVAFDERDEQEASRKPVFSELYEASKQTASPWVFEPEYPRKSRIFDGRTGNPFEQ

Query:  PIIIGKPYILKLIHQVDDKIHGHSSGHYALVTQQPLGGRAKQGGQRVGEMEVWALEGFGVAHILQEMLTYKSNHIR------------GTIPKPEDTPES
        P+IIGKPYILKLIHQVDDKIHG SSGHYALVTQQPL GR+KQGGQRVGEMEVWALEGFGVAHILQEMLTYKS+HIR            GTIPKPED PES
Subjt:  PIIIGKPYILKLIHQVDDKIHGHSSGHYALVTQQPLGGRAKQGGQRVGEMEVWALEGFGVAHILQEMLTYKSNHIR------------GTIPKPEDTPES

Query:  FQLLVRELQSLALELNHFLVS
        F+LLVREL+SLALELNHFLVS
Subjt:  FQLLVRELQSLALELNHFLVS

P50546 DNA-directed RNA polymerase subunit beta9.0e-10585.97Show/hide
Query:  MPCLQNGRPVDMVFNPLRVPSQMNVGQIFECSLGLAGSLLDRHYRIVAFDERDEQEASRKPVFSELYEASKQTASPWVFEPEYPRKSRIFDGRTGNPFEQ
        MP LQ+GRPVDMVFNPL VPS+MNVGQIFECSLGLAGSLLDRHYRI  FDER EQEASRK VFSELYEASKQTA+PWVFEPEYP KSRIFDGRTG+PFEQ
Subjt:  MPCLQNGRPVDMVFNPLRVPSQMNVGQIFECSLGLAGSLLDRHYRIVAFDERDEQEASRKPVFSELYEASKQTASPWVFEPEYPRKSRIFDGRTGNPFEQ

Query:  PIIIGKPYILKLIHQVDDKIHGHSSGHYALVTQQPLGGRAKQGGQRVGEMEVWALEGFGVAHILQEMLTYKSNHIR------------GTIPKPEDTPES
        P+IIGKPYILKLIHQVDDKIHG SSGHYALVTQQPL GR+KQGGQRVGEMEVWALEGFGVAHILQEMLTYKS+HIR            GTIPKPED PES
Subjt:  PIIIGKPYILKLIHQVDDKIHGHSSGHYALVTQQPLGGRAKQGGQRVGEMEVWALEGFGVAHILQEMLTYKSNHIR------------GTIPKPEDTPES

Query:  FQLLVRELQSLALELNHFLVS
        F+LLVREL+SLALELNHFLVS
Subjt:  FQLLVRELQSLALELNHFLVS

Q4VZP1 DNA-directed RNA polymerase subunit beta1.1e-10788.69Show/hide
Query:  MPCLQNGRPVDMVFNPLRVPSQMNVGQIFECSLGLAGSLLDRHYRIVAFDERDEQEASRKPVFSELYEASKQTASPWVFEPEYPRKSRIFDGRTGNPFEQ
        MP LQNGRPVDMVFNPL VPS+MNVGQIFECSLGLAGSLLDRHYRIV FDER EQEASRK VFSELYEASKQTASPWVFEPEYP KSRIFDGRTGNPFEQ
Subjt:  MPCLQNGRPVDMVFNPLRVPSQMNVGQIFECSLGLAGSLLDRHYRIVAFDERDEQEASRKPVFSELYEASKQTASPWVFEPEYPRKSRIFDGRTGNPFEQ

Query:  PIIIGKPYILKLIHQVDDKIHGHSSGHYALVTQQPLGGRAKQGGQRVGEMEVWALEGFGVAHILQEMLTYKSNHIR------------GTIPKPEDTPES
        P+IIGKPYILKLIHQVDDKIHG SSGHYALVTQQPL GRAKQGGQRVGEMEVWALEGFGVAHILQEMLTYKS+HIR            GTIPKPEDTPES
Subjt:  PIIIGKPYILKLIHQVDDKIHGHSSGHYALVTQQPLGGRAKQGGQRVGEMEVWALEGFGVAHILQEMLTYKSNHIR------------GTIPKPEDTPES

Query:  FQLLVRELQSLALELNHFLVS
        F+LLVREL+SLALELNHFLVS
Subjt:  FQLLVRELQSLALELNHFLVS

Arabidopsis top hitse value%identityAlignment
AT1G29940.1 nuclear RNA polymerase A25.4e-1226.59Show/hide
Query:  GRPVDMVFNPLRVPSQMNVGQIFECSLGLAGSLLDRHYRIVAFDE-----RDEQEASRKPVFSELYEASKQTASPWVFEPEYPRKSRIFDGRTGNPFEQP
        G   D++ NP   PS+M +  + E      GSL  +      F +       E+E+    +  +L    K+          +     ++ G  G   +  
Subjt:  GRPVDMVFNPLRVPSQMNVGQIFECSLGLAGSLLDRHYRIVAFDE-----RDEQEASRKPVFSELYEASKQTASPWVFEPEYPRKSRIFDGRTGNPFEQP

Query:  IIIGKPYILKLIHQVDDKIHGHSSGHYALVTQQPLGGRAKQGGQRVGEMEVWALEGFGVAHILQEMLTYKSNH
        I +G  Y  +L H V DK    S+G    +T QP+ GR + GG R GEME  +L   G +++L + L   S+H
Subjt:  IIIGKPYILKLIHQVDDKIHGHSSGHYALVTQQPLGGRAKQGGQRVGEMEVWALEGFGVAHILQEMLTYKSNH

AT4G21710.1 DNA-directed RNA polymerase family protein5.3e-2032.39Show/hide
Query:  MPCLQNGRPVDMVFNPLRVPSQMNVGQIFECSLGLAGSLLDRHYRIVAFDERDEQEASRKPVFSELYEASKQTASPWVFEPEYPRKSRIFDGRTGNPFEQ
        MP    G   D++ NP  +PS+M +GQ+ EC +G   + + +      F +      S+      L++   Q      FE       R+++G TG P   
Subjt:  MPCLQNGRPVDMVFNPLRVPSQMNVGQIFECSLGLAGSLLDRHYRIVAFDERDEQEASRKPVFSELYEASKQTASPWVFEPEYPRKSRIFDGRTGNPFEQ

Query:  PIIIGKPYILKLIHQVDDKIHGHSSGHYALVTQQPLGGRAKQGGQRVGEMEVWALEGFGVAHILQEMLTYKSNHIR
         I +G  Y  +L H VDDKIH    G   ++T+QP  GR++ GG R GEME   +   G AH L+E L  +S+  R
Subjt:  PIIIGKPYILKLIHQVDDKIHGHSSGHYALVTQQPLGGRAKQGGQRVGEMEVWALEGFGVAHILQEMLTYKSNHIR

AT5G45140.1 nuclear RNA polymerase C21.5e-1733.13Show/hide
Query:  DMVFNPLRVPSQMNVGQIFECSLGLAGSLLDRHYRIVAFDERDEQEASRKPVFSELYEASKQTASPWVFEPEYPRKSRIFDGRTGNPFEQPIIIGKPYIL
        D++ NP   PS+M VG++ E     AG    R +   AF ER       + + + L E              Y  K  ++ G +G P E  I +G  Y  
Subjt:  DMVFNPLRVPSQMNVGQIFECSLGLAGSLLDRHYRIVAFDERDEQEASRKPVFSELYEASKQTASPWVFEPEYPRKSRIFDGRTGNPFEQPIIIGKPYIL

Query:  KLIHQVDDKIHGHSSGHYALVTQQPLGGRAKQGGQRVGEMEVWALEGFGVAHILQEMLTYKSN
        KL H V DK+H   SG   ++T+QP  G++K GG RVGEME   L  +G + ++ E L   S+
Subjt:  KLIHQVDDKIHGHSSGHYALVTQQPLGGRAKQGGQRVGEMEVWALEGFGVAHILQEMLTYKSN

ATCG00190.1 RNA polymerase subunit beta6.4e-10685.97Show/hide
Query:  MPCLQNGRPVDMVFNPLRVPSQMNVGQIFECSLGLAGSLLDRHYRIVAFDERDEQEASRKPVFSELYEASKQTASPWVFEPEYPRKSRIFDGRTGNPFEQ
        MP LQ+GRPVDMVFNPL VPS+MNVGQIFECSLGLAGSLLDRHYRI  FDER EQEASRK VFSELYEASKQTA+PWVFEPEYP KSRIFDGRTG+PFEQ
Subjt:  MPCLQNGRPVDMVFNPLRVPSQMNVGQIFECSLGLAGSLLDRHYRIVAFDERDEQEASRKPVFSELYEASKQTASPWVFEPEYPRKSRIFDGRTGNPFEQ

Query:  PIIIGKPYILKLIHQVDDKIHGHSSGHYALVTQQPLGGRAKQGGQRVGEMEVWALEGFGVAHILQEMLTYKSNHIR------------GTIPKPEDTPES
        P+IIGKPYILKLIHQVDDKIHG SSGHYALVTQQPL GR+KQGGQRVGEMEVWALEGFGVAHILQEMLTYKS+HIR            GTIPKPED PES
Subjt:  PIIIGKPYILKLIHQVDDKIHGHSSGHYALVTQQPLGGRAKQGGQRVGEMEVWALEGFGVAHILQEMLTYKSNHIR------------GTIPKPEDTPES

Query:  FQLLVRELQSLALELNHFLVS
        F+LLVREL+SLALELNHFLVS
Subjt:  FQLLVRELQSLALELNHFLVS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCCTTGTTTGCAAAATGGAAGACCTGTTGATATGGTTTTCAATCCATTAAGAGTCCCCTCACAAATGAATGTAGGACAAATATTTGAGTGCTCACTCGGGTTAGCGGG
GAGTTTGCTAGATAGACATTATCGAATAGTAGCTTTTGATGAGAGAGATGAACAAGAGGCTTCTAGAAAACCAGTCTTTTCTGAATTATATGAAGCCAGTAAGCAAACAG
CGAGTCCATGGGTATTTGAACCTGAGTATCCGAGAAAAAGCAGAATATTTGATGGAAGAACGGGAAATCCTTTTGAACAACCTATTATAATAGGAAAGCCTTATATCTTG
AAATTAATTCATCAAGTTGATGATAAAATACACGGACATTCTAGTGGACATTATGCACTTGTTACACAACAACCCCTTGGAGGAAGGGCCAAGCAAGGTGGACAACGGGT
GGGAGAAATGGAGGTTTGGGCTCTAGAAGGATTTGGTGTTGCTCATATTTTACAAGAGATGCTTACTTATAAATCTAATCATATTAGAGGAACAATACCTAAACCTGAGG
ATACTCCAGAATCTTTTCAATTGCTCGTTCGAGAATTACAATCTTTGGCTTTGGAACTGAATCATTTCCTTGTATCTTAG
mRNA sequenceShow/hide mRNA sequence
ATGCCTTGTTTGCAAAATGGAAGACCTGTTGATATGGTTTTCAATCCATTAAGAGTCCCCTCACAAATGAATGTAGGACAAATATTTGAGTGCTCACTCGGGTTAGCGGG
GAGTTTGCTAGATAGACATTATCGAATAGTAGCTTTTGATGAGAGAGATGAACAAGAGGCTTCTAGAAAACCAGTCTTTTCTGAATTATATGAAGCCAGTAAGCAAACAG
CGAGTCCATGGGTATTTGAACCTGAGTATCCGAGAAAAAGCAGAATATTTGATGGAAGAACGGGAAATCCTTTTGAACAACCTATTATAATAGGAAAGCCTTATATCTTG
AAATTAATTCATCAAGTTGATGATAAAATACACGGACATTCTAGTGGACATTATGCACTTGTTACACAACAACCCCTTGGAGGAAGGGCCAAGCAAGGTGGACAACGGGT
GGGAGAAATGGAGGTTTGGGCTCTAGAAGGATTTGGTGTTGCTCATATTTTACAAGAGATGCTTACTTATAAATCTAATCATATTAGAGGAACAATACCTAAACCTGAGG
ATACTCCAGAATCTTTTCAATTGCTCGTTCGAGAATTACAATCTTTGGCTTTGGAACTGAATCATTTCCTTGTATCTTAG
Protein sequenceShow/hide protein sequence
MPCLQNGRPVDMVFNPLRVPSQMNVGQIFECSLGLAGSLLDRHYRIVAFDERDEQEASRKPVFSELYEASKQTASPWVFEPEYPRKSRIFDGRTGNPFEQPIIIGKPYIL
KLIHQVDDKIHGHSSGHYALVTQQPLGGRAKQGGQRVGEMEVWALEGFGVAHILQEMLTYKSNHIRGTIPKPEDTPESFQLLVRELQSLALELNHFLVS