CuGenDBv2

Gene ID	IVF0020538
Organism	Cucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	pseudouridylate synthase 7 homolog
Genome location	chr02:17052837..17061023
RNA-Seq Expression	IVF0020538
Synteny	IVF0020538
Gene Ontology terms	GO:0001522 - pseudouridine synthesis (biological process) GO:0008033 - tRNA processing (biological process) GO:0003723 - RNA binding (molecular function) GO:0009982 - pseudouridine synthase activity (molecular function)
InterPro domains	IPR001656 - Pseudouridine synthase, TruD IPR011760 - Pseudouridine synthase, TruD, insertion domain IPR020103 - Pseudouridine synthase, catalytic domain superfamily IPR042214 - Pseudouridine synthase, TruD, catalytic domain

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0062573.1 pseudouridylate synthase 7-like protein isoform X1 [Cucumis melo var. makuwa]

3.14e-93

94.84

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Query:  ERKVLQCLKKCPGNYLQALKAIPRTLRMMYVHSYQSYLWNHAASMRVQKYGIDKVVVGDLVYCKENHTETAAVQNSEEYEDEDCGDANSYDSCHLEEMCK
        ER +LQCLKKCPGNYLQALKAIPRTLRMMYVHSYQSYLWNHAASMRVQKYGIDKVVVGDLVYCKENHTETAAVQNSEEYEDEDCGDANSYDSCHLEEMCK
Subjt:  ERKVLQCLKKCPGNYLQALKAIPRTLRMMYVHSYQSYLWNHAASMRVQKYGIDKVVVGDLVYCKENHTETAAVQNSEEYEDEDCGDANSYDSCHLEEMCK

Query:  LGLPTERNKLVKAVTAEDVLSGNFTIDDVVLPLPGT---LSANDIAEVYNDLATK
        LGLPTERNKLVKAVTAEDVLSGNFTIDDVVLPLPG+     ANDIAEVYNDLATK
Subjt:  LGLPTERNKLVKAVTAEDVLSGNFTIDDVVLPLPGT---LSANDIAEVYNDLATK

KAE8637486.1 hypothetical protein CSA_016968 [Cucumis sativus]

4.39e-94

92.26

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Query:  ERKVLQCLKKCPGNYLQALKAIPRTLRMMYVHSYQSYLWNHAASMRVQKYGIDKVVVGDLVYCKENHTETAAVQNSEEYEDEDCGDANSYDSCHLEEMCK
        ER +LQCLKKCPGNYLQALKAIPRTLRMMYVHSYQSYLWNHAASMRVQKYGIDKVVVGDLVYCKENHTETAAVQNSEEYEDEDCGDANSYDSCHLEE+CK
Subjt:  ERKVLQCLKKCPGNYLQALKAIPRTLRMMYVHSYQSYLWNHAASMRVQKYGIDKVVVGDLVYCKENHTETAAVQNSEEYEDEDCGDANSYDSCHLEEMCK

Query:  LGLPTERNKLVKAVTAEDVLSGNFTIDDVVLPLPGT---LSANDIAEVYNDLATK
        LGLPTER+KLVKAVTA DVLSGNFTIDDVVLPLPG+      NDIAEVYNDLATK
Subjt:  LGLPTERNKLVKAVTAEDVLSGNFTIDDVVLPLPGT---LSANDIAEVYNDLATK

XP_008462716.1 PREDICTED: pseudouridylate synthase 7 homolog isoform X1 [Cucumis melo]

7.22e-93

94.84

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Query:  ERKVLQCLKKCPGNYLQALKAIPRTLRMMYVHSYQSYLWNHAASMRVQKYGIDKVVVGDLVYCKENHTETAAVQNSEEYEDEDCGDANSYDSCHLEEMCK
        ER +LQCLKKCPGNYLQALKAIPRTLRMMYVHSYQSYLWNHAASMRVQKYGIDKVVVGDLVYCKENHTETAAVQNSEEYEDEDCGDANSYDSCHLEEMCK
Subjt:  ERKVLQCLKKCPGNYLQALKAIPRTLRMMYVHSYQSYLWNHAASMRVQKYGIDKVVVGDLVYCKENHTETAAVQNSEEYEDEDCGDANSYDSCHLEEMCK

Query:  LGLPTERNKLVKAVTAEDVLSGNFTIDDVVLPLPGT---LSANDIAEVYNDLATK
        LGLPTERNKLVKAVTAEDVLSGNFTIDDVVLPLPG+     ANDIAEVYNDLATK
Subjt:  LGLPTERNKLVKAVTAEDVLSGNFTIDDVVLPLPGT---LSANDIAEVYNDLATK

XP_008462718.1 PREDICTED: pseudouridylate synthase 7 homolog isoform X2 [Cucumis melo]

3.69e-93

94.84

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Query:  ERKVLQCLKKCPGNYLQALKAIPRTLRMMYVHSYQSYLWNHAASMRVQKYGIDKVVVGDLVYCKENHTETAAVQNSEEYEDEDCGDANSYDSCHLEEMCK
        ER +LQCLKKCPGNYLQALKAIPRTLRMMYVHSYQSYLWNHAASMRVQKYGIDKVVVGDLVYCKENHTETAAVQNSEEYEDEDCGDANSYDSCHLEEMCK
Subjt:  ERKVLQCLKKCPGNYLQALKAIPRTLRMMYVHSYQSYLWNHAASMRVQKYGIDKVVVGDLVYCKENHTETAAVQNSEEYEDEDCGDANSYDSCHLEEMCK

Query:  LGLPTERNKLVKAVTAEDVLSGNFTIDDVVLPLPGT---LSANDIAEVYNDLATK
        LGLPTERNKLVKAVTAEDVLSGNFTIDDVVLPLPG+     ANDIAEVYNDLATK
Subjt:  LGLPTERNKLVKAVTAEDVLSGNFTIDDVVLPLPGT---LSANDIAEVYNDLATK

XP_031745921.1 multisubstrate pseudouridine synthase 7-like, partial [Cucumis sativus]

2.20e-90

92.26

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Query:  ERKVLQCLKKCPGNYLQALKAIPRTLRMMYVHSYQSYLWNHAASMRVQKYGIDKVVVGDLVYCKENHTETAAVQNSEEYEDEDCGDANSYDSCHLEEMCK
        ER +LQCLKKCPGNYLQALKAIPRTLRMMYVHSYQSYLWNHAASMRVQKYGIDKVVVGDLVYCKENHTETAAVQNSEEYEDEDCGDANSYDSCHLEE+CK
Subjt:  ERKVLQCLKKCPGNYLQALKAIPRTLRMMYVHSYQSYLWNHAASMRVQKYGIDKVVVGDLVYCKENHTETAAVQNSEEYEDEDCGDANSYDSCHLEEMCK

Query:  LGLPTERNKLVKAVTAEDVLSGNFTIDDVVLPLPGT---LSANDIAEVYNDLATK
        LGLPTER+KLVKAVTA DVLSGNFTIDDVVLPLPG+      NDIAEVYNDLATK
Subjt:  LGLPTERNKLVKAVTAEDVLSGNFTIDDVVLPLPGT---LSANDIAEVYNDLATK

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LY46 TRUD domain-containing protein

7.0e-77

92.41

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Query:  ERKVLQCLKKCPGNYLQALKAIPRTLRMMYVHSYQSYLWNHAASMRVQKYGIDKVVVGDLVYCKENHTETAAVQNSEEYEDEDCGDANSYDSCHLEEMCK
        ER +LQCLKKCPGNYLQALKAIPRTLRMMYVHSYQSYLWNHAASMRVQKYGIDKVVVGDLVYCKENHTETAAVQNSEEYEDEDCGDANSYDSCHLEE+CK
Subjt:  ERKVLQCLKKCPGNYLQALKAIPRTLRMMYVHSYQSYLWNHAASMRVQKYGIDKVVVGDLVYCKENHTETAAVQNSEEYEDEDCGDANSYDSCHLEEMCK

Query:  LGLPTERNKLVKAVTAEDVLSGNFTIDDVVLPLPGT---LSANDIAEVYNDLATKVLY
        LGLPTER+KLVKAVTA DVLSGNFTIDDVVLPLPG+      NDIAEVYNDLATKVLY
Subjt:  LGLPTERNKLVKAVTAEDVLSGNFTIDDVVLPLPGT---LSANDIAEVYNDLATKVLY

A0A1S3CHJ1 pseudouridylate synthase 7 homolog isoform X1

1.9e-77

94.84

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Query:  ERKVLQCLKKCPGNYLQALKAIPRTLRMMYVHSYQSYLWNHAASMRVQKYGIDKVVVGDLVYCKENHTETAAVQNSEEYEDEDCGDANSYDSCHLEEMCK
        ER +LQCLKKCPGNYLQALKAIPRTLRMMYVHSYQSYLWNHAASMRVQKYGIDKVVVGDLVYCKENHTETAAVQNSEEYEDEDCGDANSYDSCHLEEMCK
Subjt:  ERKVLQCLKKCPGNYLQALKAIPRTLRMMYVHSYQSYLWNHAASMRVQKYGIDKVVVGDLVYCKENHTETAAVQNSEEYEDEDCGDANSYDSCHLEEMCK

Query:  LGLPTERNKLVKAVTAEDVLSGNFTIDDVVLPLPGT---LSANDIAEVYNDLATK
        LGLPTERNKLVKAVTAEDVLSGNFTIDDVVLPLPG+     ANDIAEVYNDLATK
Subjt:  LGLPTERNKLVKAVTAEDVLSGNFTIDDVVLPLPGT---LSANDIAEVYNDLATK

A0A1S3CI40 pseudouridylate synthase 7 homolog isoform X2

1.9e-77

94.84

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Query:  ERKVLQCLKKCPGNYLQALKAIPRTLRMMYVHSYQSYLWNHAASMRVQKYGIDKVVVGDLVYCKENHTETAAVQNSEEYEDEDCGDANSYDSCHLEEMCK
        ER +LQCLKKCPGNYLQALKAIPRTLRMMYVHSYQSYLWNHAASMRVQKYGIDKVVVGDLVYCKENHTETAAVQNSEEYEDEDCGDANSYDSCHLEEMCK
Subjt:  ERKVLQCLKKCPGNYLQALKAIPRTLRMMYVHSYQSYLWNHAASMRVQKYGIDKVVVGDLVYCKENHTETAAVQNSEEYEDEDCGDANSYDSCHLEEMCK

Query:  LGLPTERNKLVKAVTAEDVLSGNFTIDDVVLPLPGT---LSANDIAEVYNDLATK
        LGLPTERNKLVKAVTAEDVLSGNFTIDDVVLPLPG+     ANDIAEVYNDLATK
Subjt:  LGLPTERNKLVKAVTAEDVLSGNFTIDDVVLPLPGT---LSANDIAEVYNDLATK

A0A5A7V3D9 Pseudouridylate synthase 7-like protein isoform X1

1.9e-77

94.84

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Query:  ERKVLQCLKKCPGNYLQALKAIPRTLRMMYVHSYQSYLWNHAASMRVQKYGIDKVVVGDLVYCKENHTETAAVQNSEEYEDEDCGDANSYDSCHLEEMCK
        ER +LQCLKKCPGNYLQALKAIPRTLRMMYVHSYQSYLWNHAASMRVQKYGIDKVVVGDLVYCKENHTETAAVQNSEEYEDEDCGDANSYDSCHLEEMCK
Subjt:  ERKVLQCLKKCPGNYLQALKAIPRTLRMMYVHSYQSYLWNHAASMRVQKYGIDKVVVGDLVYCKENHTETAAVQNSEEYEDEDCGDANSYDSCHLEEMCK

Query:  LGLPTERNKLVKAVTAEDVLSGNFTIDDVVLPLPGT---LSANDIAEVYNDLATK
        LGLPTERNKLVKAVTAEDVLSGNFTIDDVVLPLPG+     ANDIAEVYNDLATK
Subjt:  LGLPTERNKLVKAVTAEDVLSGNFTIDDVVLPLPGT---LSANDIAEVYNDLATK

A0A6J1DY30 pseudouridylate synthase 7 homolog

6.4e-70

87.74

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Query:  ERKVLQCLKKCPGNYLQALKAIPRTLRMMYVHSYQSYLWNHAASMRVQKYGIDKVVVGDLVYCKENHTETAAVQNSEEYEDEDCGDANSYDSCHLEEMCK
        ER +LQCLKKCPGNYLQALKAIPRTLRMMYVHSYQSYLWNHAASMRVQKYGIDKVVVGDLVYCKENHTET AVQ S EYEDEDCGD NSYDSCHLEEMCK
Subjt:  ERKVLQCLKKCPGNYLQALKAIPRTLRMMYVHSYQSYLWNHAASMRVQKYGIDKVVVGDLVYCKENHTETAAVQNSEEYEDEDCGDANSYDSCHLEEMCK

Query:  LGLPTERNKLVKAVTAEDVLSGNFTIDDVVLPLPGT---LSANDIAEVYNDLATK
        L LPTERNKLVKAVTAED+LSG FTIDDV+LPLPG+      NDIA+VY+DLATK
Subjt:  LGLPTERNKLVKAVTAEDVLSGNFTIDDVVLPLPGT---LSANDIAEVYNDLATK

SwissProt top hits

e value

%identity

Alignment

O74343 Multisubstrate pseudouridine synthase 7

2.2e-11

38.52

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Query:  NYLQALKAIPRTLRMMYVHSYQSYLWNHAASMRVQKYGIDKVVVGDLVYCKENHTETAAVQNSEEYEDEDCGDANSYDSCHLEEMCKLGLPTERNKLVKA
        +YL A + IPR LR +Y H+YQSY+WN  AS R++  G D+ VVGDLVY     TE+  +       D +  D        LE+     LP       + 
Subjt:  NYLQALKAIPRTLRMMYVHSYQSYLWNHAASMRVQKYGIDKVVVGDLVYCKENHTETAAVQNSEEYEDEDCGDANSYDSCHLEEMCKLGLPTERNKLVKA

Query:  VTAEDVLSGNFTIDDVVLPLPG
        +  ++V   NF+I D+VLPLPG
Subjt:  VTAEDVLSGNFTIDDVVLPLPG

Q08647 Multisubstrate pseudouridine synthase 7

6.9e-13

39.67

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Query:  YLQALKAIPRTLRMMYVHSYQSYLWNHAASMRVQKYGIDKVVVGDLVYCKENHTETAAVQNSEEYEDEDCGDANSYDSCHLEEMCKLGLPTERNKLVKAV
        Y  A+  IPR LR MYVH+YQSY+WN  AS R++ +G+ K+VVGDLV      +   +  + E++ DED  +A    +                   KAV
Subjt:  YLQALKAIPRTLRMMYVHSYQSYLWNHAASMRVQKYGIDKVVVGDLVYCKENHTETAAVQNSEEYEDEDCGDANSYDSCHLEEMCKLGLPTERNKLVKAV

Query:  TAEDVLSGNFTIDDVVLPLPG
        T ED+ S  +T++DVVLP PG
Subjt:  TAEDVLSGNFTIDDVVLPLPG

Q08DI8 Pseudouridylate synthase 7 homolog

9.7e-07

31.91

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Query:  NYLQALKAIPRTLRMMYVHSYQSYLWNHAASMRVQKYGIDKVVVGDLVYCKENHTETAAVQNSEEYEDEDCGDANSYDSCHLEEMCKLGLPTERNKLVKA
        N + A   IPR  R+MY+HSYQSY+WN+  S R+ +YG+ K V GDLV   +  T T        + +ED  D N                         
Subjt:  NYLQALKAIPRTLRMMYVHSYQSYLWNHAASMRVQKYGIDKVVVGDLVYCKENHTETAAVQNSEEYEDEDCGDANSYDSCHLEEMCKLGLPTERNKLVKA

Query:  VTAEDVLSGNFTIDDVVLPLPG---TLSANDIAEVYNDLAT
                 N++I DVV+PLPG       + I+E Y ++ T
Subjt:  VTAEDVLSGNFTIDDVVLPLPG---TLSANDIAEVYNDLAT

Q91VU7 Pseudouridylate synthase 7 homolog

1.3e-06

52.08

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Query:  NYLQALKAIPRTLRMMYVHSYQSYLWNHAASMRVQKYGIDKVVVGDLV
        N + A   IPR  R+MY+HSYQSY+WN   S R+++YG+ + V GDLV
Subjt:  NYLQALKAIPRTLRMMYVHSYQSYLWNHAASMRVQKYGIDKVVVGDLV

Q96PZ0 Pseudouridylate synthase 7 homolog

5.7e-07

32.62

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Query:  NYLQALKAIPRTLRMMYVHSYQSYLWNHAASMRVQKYGIDKVVVGDLVYCKENHTETAAVQNSEEYEDEDCGDANSYDSCHLEEMCKLGLPTERNKLVKA
        N + A   IPR  R+MY+HSYQSY+WN+  S R++ YG+ K V GDLV   +  T T        Y +ED  D N                         
Subjt:  NYLQALKAIPRTLRMMYVHSYQSYLWNHAASMRVQKYGIDKVVVGDLVYCKENHTETAAVQNSEEYEDEDCGDANSYDSCHLEEMCKLGLPTERNKLVKA

Query:  VTAEDVLSGNFTIDDVVLPLPG---TLSANDIAEVYNDLAT
                 N++I DVV+PLPG       + I E Y ++ T
Subjt:  VTAEDVLSGNFTIDDVVLPLPG---TLSANDIAEVYNDLAT

Arabidopsis top hits

e value

%identity

Alignment

AT3G04820.1 Pseudouridine synthase family protein

4.4e-39

52.26

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Query:  ERKVLQCLKKCPGNYLQALKAIPRTLRMMYVHSYQSYLWNHAASMRVQKYGIDKVVVGDLVYCKENHTETAAVQNSEEYEDEDCGDANSYDSCHLEEMCK
        ER +LQCLKKCPGNYLQALK IPRTLRMMYVHSYQSYLWN+AAS+RV+ YG  +VV+GDLV  K +  +      + E+ +       + D   +++   
Subjt:  ERKVLQCLKKCPGNYLQALKAIPRTLRMMYVHSYQSYLWNHAASMRVQKYGIDKVVVGDLVYCKENHTETAAVQNSEEYEDEDCGDANSYDSCHLEEMCK

Query:  LGLPTERNKLVKAVTAEDVLSGNFTIDDVVLPLPGT---LSANDIAEVYNDLATK
        + LP ER+ LVK V+ ED+ +G ++  D+VLPLPG+     +NDIAE+Y+DLA K
Subjt:  LGLPTERNKLVKAVTAEDVLSGNFTIDDVVLPLPGT---LSANDIAEVYNDLATK

Sequences

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CDS sequence

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ATGGTGTTAGCATCGCTGATTAGAGAGACATTTGAGCTACGTTCGAGGAGTTCCTTCTCCATCCACCTTTTAGAGAGAAAAGTTCTACAATGTTTGAAGAAATGTCCTGG
GAACTATTTGCAGGCTCTTAAAGCTATACCTAGAACTTTGAGAATGATGTATGTGCATAGTTATCAAAGCTATTTATGGAATCATGCAGCAAGTATGAGAGTGCAAAAAT
ACGGGATTGACAAAGTGGTTGTTGGAGACTTGGTATACTGTAAAGAAAACCACACTGAAACAGCTGCAGTTCAAAATTCTGAAGAATACGAAGATGAGGACTGTGGTGAT
GCTAACTCATATGACTCTTGTCATTTAGAGGAAATGTGCAAGCTTGGTCTTCCAACTGAAAGAAATAAGCTAGTGAAGGCTGTTACTGCTGAAGATGTCCTCAGTGGAAA
CTTTACTATTGATGATGTTGTTCTTCCTTTGCCTGGTACTCTATCCGCAAATGATATTGCTGAAGTGTATAATGATTTAGCGACTAAGGTTCTTTATTAA

mRNA sequence

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Protein sequence

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MVLASLIRETFELRSRSSFSIHLLERKVLQCLKKCPGNYLQALKAIPRTLRMMYVHSYQSYLWNHAASMRVQKYGIDKVVVGDLVYCKENHTETAAVQNSEEYEDEDCGD
ANSYDSCHLEEMCKLGLPTERNKLVKAVTAEDVLSGNFTIDDVVLPLPGTLSANDIAEVYNDLATKVLY

IVF0020538 (gene) of Melon (IVF77) v1 genome