CuGenDBv2

Gene ID	IVF0020560
Organism	Cucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Reverse transcriptase domain-containing protein
Genome location	chr03:9323210..9325304
RNA-Seq Expression	IVF0020560
Synteny	IVF0020560
Gene Ontology terms	GO:0006278 - RNA-dependent DNA biosynthetic process (biological process) GO:0016021 - integral component of membrane (cellular component) GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
InterPro domains	IPR000477 - Reverse transcriptase domain IPR043502 - DNA/RNA polymerase superfamily

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAA0046851.1 uncharacterized protein E6C27_scaffold19358G00020 [Cucumis melo var. makuwa]

0.0

78.51

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Query:  MSDVLSHQAGLATETFWTAVRLEKASLRQKSRIRWLKLGDQNTTFFHRSVCSRMSRNTLRSLVDSDGTRVSSHDGVAQMAVNYFSNSLGSQEIGYRELSP
        +SDVLS QA LATETFWTAVRLE+ASLRQKS++RWL LGDQNT FFHRSV SR+SRN+L SLVDSDG+RVSSHDGVAQMAVNYFSNSLGSQEIGYRELSP
Subjt:  MSDVLSHQAGLATETFWTAVRLEKASLRQKSRIRWLKLGDQNTTFFHRSVCSRMSRNTLRSLVDSDGTRVSSHDGVAQMAVNYFSNSLGSQEIGYRELSP

Query:  VIDDIVQFQWSEECCQALQLPISREEVRRVLFSMDSGKAPGPDGFFTGFFKGAWSVVGEDFCDAVLHFFETCYLPVGVNATAITLIPKHNGAERLEDFRL
        +IDDIVQFQWSEECCQALQLPISREEVRRVLFSMDSGKAPGPDGF  GF+KGAWSVVGEDFC+AVLHFFETCYLP+GVNATAITLIPKH GAERLEDFR 
Subjt:  VIDDIVQFQWSEECCQALQLPISREEVRRVLFSMDSGKAPGPDGFFTGFFKGAWSVVGEDFCDAVLHFFETCYLPVGVNATAITLIPKHNGAERLEDFRL

Query:  ISCCNVLYKCISKILADRLRVWLPSFISSNQSAFVPGRSIIENILLCQELVGGYHLNSGKPRCTLKVDHQKAYDSVNWDFLFGLLIAIGTPLKFVSWIRA
        ISCCNVLYKCISKILADRLR+WLPSFISSNQSAF+PGRSIIENILLCQELVGGYHLNSGKPRCTLKVD QKAYDSVNWDFLFGLLIAIGTPLKFVSWIRA
Subjt:  ISCCNVLYKCISKILADRLRVWLPSFISSNQSAFVPGRSIIENILLCQELVGGYHLNSGKPRCTLKVDHQKAYDSVNWDFLFGLLIAIGTPLKFVSWIRA

Query:  CVTSTMFSIMI----------------------------------------------WLAEGVKLTYLTFADDLMIFCAADEPSIRFIRECLQKFGELSG
        CVTS+MFSIMI                                                 E VKLT+LTFADDLMIFCAADE SI FIRECLQKFGE SG
Subjt:  CVTSTMFSIMI----------------------------------------------WLAEGVKLTYLTFADDLMIFCAADEPSIRFIRECLQKFGELSG

Query:  LFANPRKSSIFVAGVNNENASHLAACMGFVRGNLPIRYLGLPLLAGRLRSNDYAPLIQRITSRIRSWTARVLSFAGRLQLVRFVLRSLQVYWASVFVLPA
        LFANPRKSSIFV GVNNE ASHLAAC+G      P            LRS D APLIQRITSRIRSWTARVLSFAGRLQLVR VLRSLQVYWASVFVLPA
Subjt:  LFANPRKSSIFVAGVNNENASHLAACMGFVRGNLPIRYLGLPLLAGRLRSNDYAPLIQRITSRIRSWTARVLSFAGRLQLVRFVLRSLQVYWASVFVLPA

Query:  YVHHEVDKILISYLWRGKEEGRGGIKVAWVDVCLPFEESGLGIRDGPSWNIASTLKILLLMLTNSGSLWVAWVKAYILKGRSLWDVDSRVGRSWRLRAIL
        YVH+EVDKIL SYLWRGKEEGRGGIKVAWVDVCLPFEE GLGIRDGPSWNIA+TLKIL   LTN GSLWVAW++AYILKG+SLWDVDSRVGRSW LRAIL
Subjt:  YVHHEVDKILISYLWRGKEEGRGGIKVAWVDVCLPFEESGLGIRDGPSWNIASTLKILLLMLTNSGSLWVAWVKAYILKGRSLWDVDSRVGRSWRLRAIL

Query:  RKREKLKHLVWMKVGNSNSCRVWLDSWLLGDAILEQVGERVMYDAASWREARLSDFIDPDGEWLWPRVSLDLIDLWERVQEVSLCLSVSDSWVWVPGR
        RKREK+KH                            VGERV+YDAAS REA+LSDFIDP+GEWLWPRVSL+LIDLWERVQEVS CLSVSDSWVWVPGR
Subjt:  RKREKLKHLVWMKVGNSNSCRVWLDSWLLGDAILEQVGERVMYDAASWREARLSDFIDPDGEWLWPRVSLDLIDLWERVQEVSLCLSVSDSWVWVPGR

KAA0057642.1 reverse transcriptase [Cucumis melo var. makuwa]

5.78e-311

72.27

Show/hide

Query:  MSDVLSHQAGLATETFWTAVRLEKASLRQKSRIRWLKLGDQNTTFFHRSVCSRMSRNTLRSLVDSDGTRVSSHDGVAQMAVNYFSNSLGSQEIGYRELSP
        MSDVLS QA LATETFWTAVRLEK                            R  RN L  +VDS  +RVSSHDGVAQMAVNYFSNSLGSQEIGYREL+P
Subjt:  MSDVLSHQAGLATETFWTAVRLEKASLRQKSRIRWLKLGDQNTTFFHRSVCSRMSRNTLRSLVDSDGTRVSSHDGVAQMAVNYFSNSLGSQEIGYRELSP

Query:  VIDDIVQFQWSEECCQALQLPISREEVRRVLFSMDSGKAPGPDGFFTGFFKGAWSVVGEDFCDAVLHFFETCYLPVGVNATAITLIPKHNGAERLEDFRL
        +IDDIVQFQWSEECCQALQ+PISREEVRRVLFSMDSGKAPGPDGF  GFFKGAWSV+GEDFCDAVLHFFET YLPVGVNATAITLIPKHNGAERLEDFR 
Subjt:  VIDDIVQFQWSEECCQALQLPISREEVRRVLFSMDSGKAPGPDGFFTGFFKGAWSVVGEDFCDAVLHFFETCYLPVGVNATAITLIPKHNGAERLEDFRL

Query:  ISCCNVLYKCISKILADRLRVWLPSFISSNQSAFVPGRSIIENILLCQELVGGYHLNSGKPRCTLKVDHQKAYDSVNWDFLFGLLIAIGTPLKFVSWIRA
        ISCCNVLYKCISKILADRLRVWLPSFISSNQSAF+ GRSIIENILLCQELVGGYHLNSGKPRCTLKVD QKAYDSVNWDFLFGL I+I TPLKFVSWI A
Subjt:  ISCCNVLYKCISKILADRLRVWLPSFISSNQSAFVPGRSIIENILLCQELVGGYHLNSGKPRCTLKVDHQKAYDSVNWDFLFGLLIAIGTPLKFVSWIRA

Query:  CVTSTMFSIMI------------WLAEGVKLTYLTFA---DDLMIFCAADEPSIRFIRECLQKFGELSGLFANPRKSSIFVAGVNNENASHLAACMGFVR
        CVTS MFSIMI             + +G  L+   F    + L         S +F   C ++FGELSGLFANPRKSSIF+AGVNNENAS LAACMGFVR
Subjt:  CVTSTMFSIMI------------WLAEGVKLTYLTFA---DDLMIFCAADEPSIRFIRECLQKFGELSGLFANPRKSSIFVAGVNNENASHLAACMGFVR

Query:  GNLPIRYLGLPLLAGRLRSNDYAPLIQRITSRIRSWTARVLSFAGRLQLVRFVLRSLQVYWASVFVLPAYVHHEVDKILISYLWRGKEEGRGGIKVAWVD
        GNLP+RYLGLPLL GRLRSND  PLIQRITSRIRS +ARVLSFAGRLQLV  VL SLQVYWA VFVLPAYVH+E                          
Subjt:  GNLPIRYLGLPLLAGRLRSNDYAPLIQRITSRIRSWTARVLSFAGRLQLVRFVLRSLQVYWASVFVLPAYVHHEVDKILISYLWRGKEEGRGGIKVAWVD

Query:  VCLPFEESGLGIRDGPSWNIASTLKILLLMLTNSGSLWVAWVKAYILKGRSLWDVDSRVGRSWRLRAILRKREKLKHLVWMKVGNSNSCRVWLDSWLLGD
              E GLGIRDG +W  ASTLKIL LMLTNSGSLWVAWV+AY+LKGRSLWDVDSRVGRSW LRAILRK+EKLK  V MKVGN N CRVWLD WL   
Subjt:  VCLPFEESGLGIRDGPSWNIASTLKILLLMLTNSGSLWVAWVKAYILKGRSLWDVDSRVGRSWRLRAILRKREKLKHLVWMKVGNSNSCRVWLDSWLLGD

Query:  AILEQVGERVMYDAASWREARLSDFIDPDGEWLWPRVSLDLIDLWERVQ
        AILEQVGERV+YDAAS REA LS+FI PDGEWLWPR    +   WE ++
Subjt:  AILEQVGERVMYDAASWREARLSDFIDPDGEWLWPRVSLDLIDLWERVQ

KAA0059752.1 F17F8.5 [Cucumis melo var. makuwa]

0.0

93.09

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Query:  MSDVLSHQAGLATETFWTAVRLEKASLRQKSRIRWLKLGDQNTTFFHRSVCSRMSRNTLRSLVDSDGTRVSSHDGVAQMAVNYFSNSLGSQEIGYRELSP
        MSDVLSHQAGLATETFWTAVRLEKASLRQKSRIRWLKLGDQNTTFFHRSVCSRMSRNTLRSLVDSDGTRVSSHDGVAQMAVNYFSNSLGSQEIGYRELSP
Subjt:  MSDVLSHQAGLATETFWTAVRLEKASLRQKSRIRWLKLGDQNTTFFHRSVCSRMSRNTLRSLVDSDGTRVSSHDGVAQMAVNYFSNSLGSQEIGYRELSP

Query:  VIDDIVQFQWSEECCQALQLPISREEVRRVLFSMDSGKAPGPDGFFTGFFKGAWSVVGEDFCDAVLHFFETCYLPVGVNATAITLIPKHNGAERLEDFRL
        VIDDIVQFQWSEECCQALQLPISREEVRRVLFSMDSGKAPGPDGFFTGFFKGAWSVVGEDFCDAVLHFFETCYLPVGVNATAITLIPKHNGAERLEDFRL
Subjt:  VIDDIVQFQWSEECCQALQLPISREEVRRVLFSMDSGKAPGPDGFFTGFFKGAWSVVGEDFCDAVLHFFETCYLPVGVNATAITLIPKHNGAERLEDFRL

Query:  ISCCNVLYKCISKILADRLRVWLPSFISSNQSAFVPGRSIIENILLCQELVGGYHLNSGKPRCTLKVDHQKAYDSVNWDFLFGLLIAIGTPLKF------
        ISCCNVLYKCISKILADRLRVWLPSFISSNQSAFVPGRSIIENILLCQELVGGYHLNSGKPRCTLKVDHQKAYDSVNWDFLFGLLIAIGTPLKF      
Subjt:  ISCCNVLYKCISKILADRLRVWLPSFISSNQSAFVPGRSIIENILLCQELVGGYHLNSGKPRCTLKVDHQKAYDSVNWDFLFGLLIAIGTPLKF------

Query:  -VSWIRACVTSTMFSIMI----------WLAEGVKLTYLTFADDLMIFCAADEPSIRFIRECLQKFGELSGLFANPRKSSIFVAGVNNENASHLAACMGF
         +S     +   + S M+             E VKLTYLTFADDLMIFCAADEPSIRFIRECLQKFGELSGLFANPRKSSIFVAGVNNENASHLAACMGF
Subjt:  -VSWIRACVTSTMFSIMI----------WLAEGVKLTYLTFADDLMIFCAADEPSIRFIRECLQKFGELSGLFANPRKSSIFVAGVNNENASHLAACMGF

Query:  VRGNLPIRYLGLPLLAGRLRSNDYAPLIQRITSRIRSWTARVLSFAGRLQLVRFVLRSLQVYWASVFVLPAYVHHEVDKILISYLWRGKEEGRGGIKVAW
        VRGNLPIRYLGLPLLAGRLRSNDYAPLIQRITSRIRSWTARVLSFAGRLQLVRFVLRSLQVYWASVFVLPAYVHHEVDKILISYLWRGKEEGRGGIKVAW
Subjt:  VRGNLPIRYLGLPLLAGRLRSNDYAPLIQRITSRIRSWTARVLSFAGRLQLVRFVLRSLQVYWASVFVLPAYVHHEVDKILISYLWRGKEEGRGGIKVAW

Query:  VDVCLPFEESGLGIRDGPSWNIASTLKILLLMLTNSGSLWVAWVKAYILKGRSLWDVDSRVGRSWRLRAILRKREKLKHLVWMKVGNSNSCRVWLDSWLL
        VDVCLPFEESGLGIRDGPSWNIASTLKILLLMLTNSGSLWVAWVKAYILKGRSLWDVDSRVGRSWRLRAILRKREKLKHLVWMKVGNSNSCRVWLDSWLL
Subjt:  VDVCLPFEESGLGIRDGPSWNIASTLKILLLMLTNSGSLWVAWVKAYILKGRSLWDVDSRVGRSWRLRAILRKREKLKHLVWMKVGNSNSCRVWLDSWLL

Query:  GDAILEQVGERVMYDAASWREARLSDFIDPDGEWLWPRVSLDLIDLWERVQ
        GDAILEQVGERVMYDAASWREARLSDFIDPDGEWLWPR    +   WE V+
Subjt:  GDAILEQVGERVMYDAASWREARLSDFIDPDGEWLWPRVSLDLIDLWERVQ

KAA0062318.1 uncharacterized protein E6C27_scaffold154G00690 [Cucumis melo var. makuwa]

0.0

80.23

Show/hide

Query:  MSDVLSHQAGLATETFWTAVRLEKASLRQKSRIRWLKLGDQNTTFFHRSVCSRMSRNTLRSLVDSDGTRVSSHDGVAQMAVNYFSNSLGSQEIGYRELSP
        MSDVLSHQAGL+TETFWTAVRLE+ASLRQKSRIRWLKLGDQNT FFHRSV SRMSRNTLRSLVDSDGTR                      EIGYRELSP
Subjt:  MSDVLSHQAGLATETFWTAVRLEKASLRQKSRIRWLKLGDQNTTFFHRSVCSRMSRNTLRSLVDSDGTRVSSHDGVAQMAVNYFSNSLGSQEIGYRELSP

Query:  VIDDIVQFQWSEECCQALQLPISREEVRRVLFSMDSGKAPGPDGFFTGFFKGAWSVVGEDFCDAVLHFFETCYLPVGVNATAITLIPKHNGAERLEDFRL
        VIDDIVQFQWSEECCQALQLPISREEVRRVLFSMDSGKAPGPDGF                              VGVNATAITLIPKHNGAERLEDFR 
Subjt:  VIDDIVQFQWSEECCQALQLPISREEVRRVLFSMDSGKAPGPDGFFTGFFKGAWSVVGEDFCDAVLHFFETCYLPVGVNATAITLIPKHNGAERLEDFRL

Query:  ISCCNVLYKCISKILADRLRVWLPSFISSNQSAFVPGRSIIENILLCQELVGGYHLNSGKPRCTLKVDHQKAYDSVNWDFLFGLLIAIGTPLKFVSWIRA
        ISCCN LYKCISKILADRLR WLPSFISSNQSAF+PGRSIIENILLCQELVGGYHLNSGKPRCTLKVD QKAYDSVNWDFLFGLLIAIGTPLKFVSWIRA
Subjt:  ISCCNVLYKCISKILADRLRVWLPSFISSNQSAFVPGRSIIENILLCQELVGGYHLNSGKPRCTLKVDHQKAYDSVNWDFLFGLLIAIGTPLKFVSWIRA

Query:  CVTSTMFSIMI----------------------------------------------WLAEGVKLTYLTFADDLMIFCAADEPSIRFIRECLQKFGELSG
        CVTS MFSIMI                                                 E VKLT+LTFADDLMIFCAA+EPSIRFIRECLQKFGELSG
Subjt:  CVTSTMFSIMI----------------------------------------------WLAEGVKLTYLTFADDLMIFCAADEPSIRFIRECLQKFGELSG

Query:  LFANPRKSSIFVAGVNNENASHLAACMGFVRGNLPIRYLGLPLLAGRLRSNDYAPLIQRITSRIRSWTARVLSFAGRLQLVRFVLRSLQVYWASVFVLPA
        LFANPRKSSIFVAGVNNENASHLA CMGFVRGNL +RYLGLPLLAGRLRSNDYAPLIQRITSRIRSWTARVLSFAGRLQLV  VLRS QVYWASVFVLPA
Subjt:  LFANPRKSSIFVAGVNNENASHLAACMGFVRGNLPIRYLGLPLLAGRLRSNDYAPLIQRITSRIRSWTARVLSFAGRLQLVRFVLRSLQVYWASVFVLPA

Query:  YVHHEVDKILISYLWRGKEEGRGGIKVAWVDVCLPFEESGLGIRDGPSWNIASTLKILLLMLTNSGSLWVAWVKAYILKGRSLWDVDSRVGRSWRLRAIL
        YVH+EVDKIL SYLWRGKEEGRGGIKVAWVDVCLPFEE GLGIRDGPSWNIASTLKIL LMLTNSGSLWVAWV+AYILKGRSLWDVDSRVG+SW LRAIL
Subjt:  YVHHEVDKILISYLWRGKEEGRGGIKVAWVDVCLPFEESGLGIRDGPSWNIASTLKILLLMLTNSGSLWVAWVKAYILKGRSLWDVDSRVGRSWRLRAIL

Query:  RKREKLKHLVWMKVGNSNSCRVWLDSWLLGDAILEQVGERVMYDAASWREARLSDFIDPDGEWLWPRVSLDLIDLWERVQEVSLCLSVSDSWVWVPGR
        RKREKLKHLV MKVGN NS RVWLD WL   AILEQVGERVMYDAAS R+ARLSDFIDPDGEWLWPRVSL+LIDLWERVQEVS CLSVSDSWVWVPGR
Subjt:  RKREKLKHLVWMKVGNSNSCRVWLDSWLLGDAILEQVGERVMYDAASWREARLSDFIDPDGEWLWPRVSLDLIDLWERVQEVSLCLSVSDSWVWVPGR

TYK26658.1 uncharacterized protein E5676_scaffold313G003080 [Cucumis melo var. makuwa]

5.23e-308

79.3

Show/hide

Query:  MSDVLSHQAGLATETFWTAVRLEKASLRQKSRIRWLKLGDQNTTFFHRSVCSRMSRNTLRSLVDSDGTRVSSHDGVAQMAVNYFSNSLGSQEIGYRELSP
        MSDVLSHQAGL+TETFWTAVRLE+ASLRQKSRIRWLKLGDQNT FFHRSV SRMSRNTLRSLVDSDGTR                      EIGYRELSP
Subjt:  MSDVLSHQAGLATETFWTAVRLEKASLRQKSRIRWLKLGDQNTTFFHRSVCSRMSRNTLRSLVDSDGTRVSSHDGVAQMAVNYFSNSLGSQEIGYRELSP

Query:  VIDDIVQFQWSEECCQALQLPISREEVRRVLFSMDSGKAPGPDGFFTGFFKGAWSVVGEDFCDAVLHFFETCYLPVGVNATAITLIPKHNGAERLEDFRL
        VIDDIVQFQWSE+CCQALQLPISREEVRRVLFSMDSGKAPGPDGF                              VGVNATAITLIP  NGAERLEDFR 
Subjt:  VIDDIVQFQWSEECCQALQLPISREEVRRVLFSMDSGKAPGPDGFFTGFFKGAWSVVGEDFCDAVLHFFETCYLPVGVNATAITLIPKHNGAERLEDFRL

Query:  ISCCNVLYKCISKILADRLRVWLPSFISSNQSAFVPGRSIIENILLCQELVGGYHLNSGKPRCTLKVDHQKAYDSVNWDFLFGLLIAIGTPLKFVSWIR-
        ISCCN LYKCISKILADRLR WLPSFISSNQSAF+PGRSIIENILLCQELVGGYHLNSGKPRCTLKVD QKAYDSVNWDFLFGLLIAIGTPLK    +R 
Subjt:  ISCCNVLYKCISKILADRLRVWLPSFISSNQSAFVPGRSIIENILLCQELVGGYHLNSGKPRCTLKVDHQKAYDSVNWDFLFGLLIAIGTPLKFVSWIR-

Query:  ACVTSTMFSIMIW------------------LAEGVKLTYLTFADDLMIFCAADEPSIRFIRECLQKFGELSGLFANPRKSSIFVAGVNNENASHLAACM
            ST   +M+                     E VKLT+LTFADDLMIFCAA+EPSIRFIRECL+KFGELSGLFANPRKSSIFVAGVNNENASHLA CM
Subjt:  ACVTSTMFSIMIW------------------LAEGVKLTYLTFADDLMIFCAADEPSIRFIRECLQKFGELSGLFANPRKSSIFVAGVNNENASHLAACM

Query:  GFVRGNLPIRYLGLPLLAGRLRSNDYAPLIQRITSRIRSWTARVLSFAGRLQLVRFVLRSLQVYWASVFVLPAYVHHEVDKILISYLWRGKEEGRGGIKV
        GFVRGNL +RYLGLPLLAGRLRSNDYA LIQRITSRIRSWTARVLSFAGRLQLV  VLRS QVY ASVFVLPAYVH+EVDKIL SYLWRGKEEGRGGIKV
Subjt:  GFVRGNLPIRYLGLPLLAGRLRSNDYAPLIQRITSRIRSWTARVLSFAGRLQLVRFVLRSLQVYWASVFVLPAYVHHEVDKILISYLWRGKEEGRGGIKV

Query:  AWVDVCLPFEESGLGIRDGPSWNIASTLKILLLMLTNSGSLWVAWVKAYILKGRSLWDVDSRVGRSWRLRAILRK
        AWVDVCLPFEE GLGIRDGPSWNIASTLKIL LMLTNSGSLWVAWV+AYILKGRSLWDVDSRVG+SW LRAILRK
Subjt:  AWVDVCLPFEESGLGIRDGPSWNIASTLKILLLMLTNSGSLWVAWVKAYILKGRSLWDVDSRVGRSWRLRAILRK

TrEMBL top hits

e value

%identity

Alignment

A0A5A7TZS0 Reverse transcriptase domain-containing protein

7.0e-308

78.51

Show/hide

Query:  MSDVLSHQAGLATETFWTAVRLEKASLRQKSRIRWLKLGDQNTTFFHRSVCSRMSRNTLRSLVDSDGTRVSSHDGVAQMAVNYFSNSLGSQEIGYRELSP
        +SDVLS QA LATETFWTAVRLE+ASLRQKS++RWL LGDQNT FFHRSV SR+SRN+L SLVDSDG+RVSSHDGVAQMAVNYFSNSLGSQEIGYRELSP
Subjt:  MSDVLSHQAGLATETFWTAVRLEKASLRQKSRIRWLKLGDQNTTFFHRSVCSRMSRNTLRSLVDSDGTRVSSHDGVAQMAVNYFSNSLGSQEIGYRELSP

Query:  VIDDIVQFQWSEECCQALQLPISREEVRRVLFSMDSGKAPGPDGFFTGFFKGAWSVVGEDFCDAVLHFFETCYLPVGVNATAITLIPKHNGAERLEDFRL
        +IDDIVQFQWSEECCQALQLPISREEVRRVLFSMDSGKAPGPDGF  GF+KGAWSVVGEDFC+AVLHFFETCYLP+GVNATAITLIPKH GAERLEDFR 
Subjt:  VIDDIVQFQWSEECCQALQLPISREEVRRVLFSMDSGKAPGPDGFFTGFFKGAWSVVGEDFCDAVLHFFETCYLPVGVNATAITLIPKHNGAERLEDFRL

Query:  ISCCNVLYKCISKILADRLRVWLPSFISSNQSAFVPGRSIIENILLCQELVGGYHLNSGKPRCTLKVDHQKAYDSVNWDFLFGLLIAIGTPLKFVSWIRA
        ISCCNVLYKCISKILADRLR+WLPSFISSNQSAF+PGRSIIENILLCQELVGGYHLNSGKPRCTLKVD QKAYDSVNWDFLFGLLIAIGTPLKFVSWIRA
Subjt:  ISCCNVLYKCISKILADRLRVWLPSFISSNQSAFVPGRSIIENILLCQELVGGYHLNSGKPRCTLKVDHQKAYDSVNWDFLFGLLIAIGTPLKFVSWIRA

Query:  CVTSTMFSIMI----------------------------------------------WLAEGVKLTYLTFADDLMIFCAADEPSIRFIRECLQKFGELSG
        CVTS+MFSIMI                                                 E VKLT+LTFADDLMIFCAADE SI FIRECLQKFGE SG
Subjt:  CVTSTMFSIMI----------------------------------------------WLAEGVKLTYLTFADDLMIFCAADEPSIRFIRECLQKFGELSG

Query:  LFANPRKSSIFVAGVNNENASHLAACMGFVRGNLPIRYLGLPLLAGRLRSNDYAPLIQRITSRIRSWTARVLSFAGRLQLVRFVLRSLQVYWASVFVLPA
        LFANPRKSSIFV GVNNE ASHLAAC+G      P            LRS D APLIQRITSRIRSWTARVLSFAGRLQLVR VLRSLQVYWASVFVLPA
Subjt:  LFANPRKSSIFVAGVNNENASHLAACMGFVRGNLPIRYLGLPLLAGRLRSNDYAPLIQRITSRIRSWTARVLSFAGRLQLVRFVLRSLQVYWASVFVLPA

Query:  YVHHEVDKILISYLWRGKEEGRGGIKVAWVDVCLPFEESGLGIRDGPSWNIASTLKILLLMLTNSGSLWVAWVKAYILKGRSLWDVDSRVGRSWRLRAIL
        YVH+EVDKIL SYLWRGKEEGRGGIKVAWVDVCLPFEE GLGIRDGPSWNIA+TLKIL   LTN GSLWVAW++AYILKG+SLWDVDSRVGRSW LRAIL
Subjt:  YVHHEVDKILISYLWRGKEEGRGGIKVAWVDVCLPFEESGLGIRDGPSWNIASTLKILLLMLTNSGSLWVAWVKAYILKGRSLWDVDSRVGRSWRLRAIL

Query:  RKREKLKHLVWMKVGNSNSCRVWLDSWLLGDAILEQVGERVMYDAASWREARLSDFIDPDGEWLWPRVSLDLIDLWERVQEVSLCLSVSDSWVWVPGR
        RKREK+KH                            VGERV+YDAAS REA+LSDFIDP+GEWLWPRVSL+LIDLWERVQEVS CLSVSDSWVWVPGR
Subjt:  RKREKLKHLVWMKVGNSNSCRVWLDSWLLGDAILEQVGERVMYDAASWREARLSDFIDPDGEWLWPRVSLDLIDLWERVQEVSLCLSVSDSWVWVPGR

A0A5A7UP65 Reverse transcriptase

1.2e-254

72.27

Show/hide

Query:  MSDVLSHQAGLATETFWTAVRLEKASLRQKSRIRWLKLGDQNTTFFHRSVCSRMSRNTLRSLVDSDGTRVSSHDGVAQMAVNYFSNSLGSQEIGYRELSP
        MSDVLS QA LATETFWTAVRLEK                            R  RN L  +VDS  +RVSSHDGVAQMAVNYFSNSLGSQEIGYREL+P
Subjt:  MSDVLSHQAGLATETFWTAVRLEKASLRQKSRIRWLKLGDQNTTFFHRSVCSRMSRNTLRSLVDSDGTRVSSHDGVAQMAVNYFSNSLGSQEIGYRELSP

Query:  VIDDIVQFQWSEECCQALQLPISREEVRRVLFSMDSGKAPGPDGFFTGFFKGAWSVVGEDFCDAVLHFFETCYLPVGVNATAITLIPKHNGAERLEDFRL
        +IDDIVQFQWSEECCQALQ+PISREEVRRVLFSMDSGKAPGPDGF  GFFKGAWSV+GEDFCDAVLHFFET YLPVGVNATAITLIPKHNGAERLEDFR 
Subjt:  VIDDIVQFQWSEECCQALQLPISREEVRRVLFSMDSGKAPGPDGFFTGFFKGAWSVVGEDFCDAVLHFFETCYLPVGVNATAITLIPKHNGAERLEDFRL

Query:  ISCCNVLYKCISKILADRLRVWLPSFISSNQSAFVPGRSIIENILLCQELVGGYHLNSGKPRCTLKVDHQKAYDSVNWDFLFGLLIAIGTPLKFVSWIRA
        ISCCNVLYKCISKILADRLRVWLPSFISSNQSAF+ GRSIIENILLCQELVGGYHLNSGKPRCTLKVD QKAYDSVNWDFLFGL I+I TPLKFVSWI A
Subjt:  ISCCNVLYKCISKILADRLRVWLPSFISSNQSAFVPGRSIIENILLCQELVGGYHLNSGKPRCTLKVDHQKAYDSVNWDFLFGLLIAIGTPLKFVSWIRA

Query:  CVTSTMFSIMI------------WLAEGVKLTYLTFA---DDLMIFCAADEPSIRFIRECLQKFGELSGLFANPRKSSIFVAGVNNENASHLAACMGFVR
        CVTS MFSIMI             + +G  L+   F    + L         S +F   C ++FGELSGLFANPRKSSIF+AGVNNENAS LAACMGFVR
Subjt:  CVTSTMFSIMI------------WLAEGVKLTYLTFA---DDLMIFCAADEPSIRFIRECLQKFGELSGLFANPRKSSIFVAGVNNENASHLAACMGFVR

Query:  GNLPIRYLGLPLLAGRLRSNDYAPLIQRITSRIRSWTARVLSFAGRLQLVRFVLRSLQVYWASVFVLPAYVHHEVDKILISYLWRGKEEGRGGIKVAWVD
        GNLP+RYLGLPLL GRLRSND  PLIQRITSRIRS +ARVLSFAGRLQLV  VL SLQVYWA VFVLPAYVH+                           
Subjt:  GNLPIRYLGLPLLAGRLRSNDYAPLIQRITSRIRSWTARVLSFAGRLQLVRFVLRSLQVYWASVFVLPAYVHHEVDKILISYLWRGKEEGRGGIKVAWVD

Query:  VCLPFEESGLGIRDGPSWNIASTLKILLLMLTNSGSLWVAWVKAYILKGRSLWDVDSRVGRSWRLRAILRKREKLKHLVWMKVGNSNSCRVWLDSWLLGD
             EE GLGIRDG +W  ASTLKIL LMLTNSGSLWVAWV+AY+LKGRSLWDVDSRVGRSW LRAILRK+EKLK  V MKVGN N CRVWLD WL   
Subjt:  VCLPFEESGLGIRDGPSWNIASTLKILLLMLTNSGSLWVAWVKAYILKGRSLWDVDSRVGRSWRLRAILRKREKLKHLVWMKVGNSNSCRVWLDSWLLGD

Query:  AILEQVGERVMYDAASWREARLSDFIDPDGEWLWPRVSLDLIDLWERVQ
        AILEQVGERV+YDAAS REA LS+FI PDGEWLWPR    +   WE ++
Subjt:  AILEQVGERVMYDAASWREARLSDFIDPDGEWLWPRVSLDLIDLWERVQ

A0A5A7UV01 F17F8.5

0.0e+00

93.09

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Query:  MSDVLSHQAGLATETFWTAVRLEKASLRQKSRIRWLKLGDQNTTFFHRSVCSRMSRNTLRSLVDSDGTRVSSHDGVAQMAVNYFSNSLGSQEIGYRELSP
        MSDVLSHQAGLATETFWTAVRLEKASLRQKSRIRWLKLGDQNTTFFHRSVCSRMSRNTLRSLVDSDGTRVSSHDGVAQMAVNYFSNSLGSQEIGYRELSP
Subjt:  MSDVLSHQAGLATETFWTAVRLEKASLRQKSRIRWLKLGDQNTTFFHRSVCSRMSRNTLRSLVDSDGTRVSSHDGVAQMAVNYFSNSLGSQEIGYRELSP

Query:  VIDDIVQFQWSEECCQALQLPISREEVRRVLFSMDSGKAPGPDGFFTGFFKGAWSVVGEDFCDAVLHFFETCYLPVGVNATAITLIPKHNGAERLEDFRL
        VIDDIVQFQWSEECCQALQLPISREEVRRVLFSMDSGKAPGPDGFFTGFFKGAWSVVGEDFCDAVLHFFETCYLPVGVNATAITLIPKHNGAERLEDFRL
Subjt:  VIDDIVQFQWSEECCQALQLPISREEVRRVLFSMDSGKAPGPDGFFTGFFKGAWSVVGEDFCDAVLHFFETCYLPVGVNATAITLIPKHNGAERLEDFRL

Query:  ISCCNVLYKCISKILADRLRVWLPSFISSNQSAFVPGRSIIENILLCQELVGGYHLNSGKPRCTLKVDHQKAYDSVNWDFLFGLLIAIGTPLKF------
        ISCCNVLYKCISKILADRLRVWLPSFISSNQSAFVPGRSIIENILLCQELVGGYHLNSGKPRCTLKVDHQKAYDSVNWDFLFGLLIAIGTPLKF      
Subjt:  ISCCNVLYKCISKILADRLRVWLPSFISSNQSAFVPGRSIIENILLCQELVGGYHLNSGKPRCTLKVDHQKAYDSVNWDFLFGLLIAIGTPLKF------

Query:  -VSWIRACVTSTMFSIMI----------WLAEGVKLTYLTFADDLMIFCAADEPSIRFIRECLQKFGELSGLFANPRKSSIFVAGVNNENASHLAACMGF
         +S     +   + S M+             E VKLTYLTFADDLMIFCAADEPSIRFIRECLQKFGELSGLFANPRKSSIFVAGVNNENASHLAACMGF
Subjt:  -VSWIRACVTSTMFSIMI----------WLAEGVKLTYLTFADDLMIFCAADEPSIRFIRECLQKFGELSGLFANPRKSSIFVAGVNNENASHLAACMGF

Query:  VRGNLPIRYLGLPLLAGRLRSNDYAPLIQRITSRIRSWTARVLSFAGRLQLVRFVLRSLQVYWASVFVLPAYVHHEVDKILISYLWRGKEEGRGGIKVAW
        VRGNLPIRYLGLPLLAGRLRSNDYAPLIQRITSRIRSWTARVLSFAGRLQLVRFVLRSLQVYWASVFVLPAYVHHEVDKILISYLWRGKEEGRGGIKVAW
Subjt:  VRGNLPIRYLGLPLLAGRLRSNDYAPLIQRITSRIRSWTARVLSFAGRLQLVRFVLRSLQVYWASVFVLPAYVHHEVDKILISYLWRGKEEGRGGIKVAW

Query:  VDVCLPFEESGLGIRDGPSWNIASTLKILLLMLTNSGSLWVAWVKAYILKGRSLWDVDSRVGRSWRLRAILRKREKLKHLVWMKVGNSNSCRVWLDSWLL
        VDVCLPFEESGLGIRDGPSWNIASTLKILLLMLTNSGSLWVAWVKAYILKGRSLWDVDSRVGRSWRLRAILRKREKLKHLVWMKVGNSNSCRVWLDSWLL
Subjt:  VDVCLPFEESGLGIRDGPSWNIASTLKILLLMLTNSGSLWVAWVKAYILKGRSLWDVDSRVGRSWRLRAILRKREKLKHLVWMKVGNSNSCRVWLDSWLL

Query:  GDAILEQVGERVMYDAASWREARLSDFIDPDGEWLWPRVSLDLIDLWERVQ
        GDAILEQVGERVMYDAASWREARLSDFIDPDGEWLWPR    +   WE V+
Subjt:  GDAILEQVGERVMYDAASWREARLSDFIDPDGEWLWPRVSLDLIDLWERVQ

A0A5A7V3Z0 Reverse transcriptase domain-containing protein

0.0e+00

80.23

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Query:  MSDVLSHQAGLATETFWTAVRLEKASLRQKSRIRWLKLGDQNTTFFHRSVCSRMSRNTLRSLVDSDGTRVSSHDGVAQMAVNYFSNSLGSQEIGYRELSP
        MSDVLSHQAGL+TETFWTAVRLE+ASLRQKSRIRWLKLGDQNT FFHRSV SRMSRNTLRSLVDSDGTR                      EIGYRELSP
Subjt:  MSDVLSHQAGLATETFWTAVRLEKASLRQKSRIRWLKLGDQNTTFFHRSVCSRMSRNTLRSLVDSDGTRVSSHDGVAQMAVNYFSNSLGSQEIGYRELSP

Query:  VIDDIVQFQWSEECCQALQLPISREEVRRVLFSMDSGKAPGPDGFFTGFFKGAWSVVGEDFCDAVLHFFETCYLPVGVNATAITLIPKHNGAERLEDFRL
        VIDDIVQFQWSEECCQALQLPISREEVRRVLFSMDSGKAPGPDGF                              VGVNATAITLIPKHNGAERLEDFR 
Subjt:  VIDDIVQFQWSEECCQALQLPISREEVRRVLFSMDSGKAPGPDGFFTGFFKGAWSVVGEDFCDAVLHFFETCYLPVGVNATAITLIPKHNGAERLEDFRL

Query:  ISCCNVLYKCISKILADRLRVWLPSFISSNQSAFVPGRSIIENILLCQELVGGYHLNSGKPRCTLKVDHQKAYDSVNWDFLFGLLIAIGTPLKFVSWIRA
        ISCCN LYKCISKILADRLR WLPSFISSNQSAF+PGRSIIENILLCQELVGGYHLNSGKPRCTLKVD QKAYDSVNWDFLFGLLIAIGTPLKFVSWIRA
Subjt:  ISCCNVLYKCISKILADRLRVWLPSFISSNQSAFVPGRSIIENILLCQELVGGYHLNSGKPRCTLKVDHQKAYDSVNWDFLFGLLIAIGTPLKFVSWIRA

Query:  CVTSTMFSIMI----------------------------------------------WLAEGVKLTYLTFADDLMIFCAADEPSIRFIRECLQKFGELSG
        CVTS MFSIMI                                                 E VKLT+LTFADDLMIFCAA+EPSIRFIRECLQKFGELSG
Subjt:  CVTSTMFSIMI----------------------------------------------WLAEGVKLTYLTFADDLMIFCAADEPSIRFIRECLQKFGELSG

Query:  LFANPRKSSIFVAGVNNENASHLAACMGFVRGNLPIRYLGLPLLAGRLRSNDYAPLIQRITSRIRSWTARVLSFAGRLQLVRFVLRSLQVYWASVFVLPA
        LFANPRKSSIFVAGVNNENASHLA CMGFVRGNL +RYLGLPLLAGRLRSNDYAPLIQRITSRIRSWTARVLSFAGRLQLV  VLRS QVYWASVFVLPA
Subjt:  LFANPRKSSIFVAGVNNENASHLAACMGFVRGNLPIRYLGLPLLAGRLRSNDYAPLIQRITSRIRSWTARVLSFAGRLQLVRFVLRSLQVYWASVFVLPA

Query:  YVHHEVDKILISYLWRGKEEGRGGIKVAWVDVCLPFEESGLGIRDGPSWNIASTLKILLLMLTNSGSLWVAWVKAYILKGRSLWDVDSRVGRSWRLRAIL
        YVH+EVDKIL SYLWRGKEEGRGGIKVAWVDVCLPFEE GLGIRDGPSWNIASTLKIL LMLTNSGSLWVAWV+AYILKGRSLWDVDSRVG+SW LRAIL
Subjt:  YVHHEVDKILISYLWRGKEEGRGGIKVAWVDVCLPFEESGLGIRDGPSWNIASTLKILLLMLTNSGSLWVAWVKAYILKGRSLWDVDSRVGRSWRLRAIL

Query:  RKREKLKHLVWMKVGNSNSCRVWLDSWLLGDAILEQVGERVMYDAASWREARLSDFIDPDGEWLWPRVSLDLIDLWERVQEVSLCLSVSDSWVWVPGR
        RKREKLKHLV MKVGN NS RVWLD WL   AILEQVGERVMYDAAS R+ARLSDFIDPDGEWLWPRVSL+LIDLWERVQEVS CLSVSDSWVWVPGR
Subjt:  RKREKLKHLVWMKVGNSNSCRVWLDSWLLGDAILEQVGERVMYDAASWREARLSDFIDPDGEWLWPRVSLDLIDLWERVQEVSLCLSVSDSWVWVPGR

A0A5D3DT20 Reverse transcriptase domain-containing protein

4.0e-247

79.27

Show/hide

Query:  MSDVLSHQAGLATETFWTAVRLEKASLRQKSRIRWLKLGDQNTTFFHRSVCSRMSRNTLRSLVDSDGTRVSSHDGVAQMAVNYFSNSLGSQEIGYRELSP
        MSDVLSHQAGL+TETFWTAVRLE+ASLRQKSRIRWLKLGDQNT FFHRSV SRMSRNTLRSLVDSDGTR                      EIGYRELSP
Subjt:  MSDVLSHQAGLATETFWTAVRLEKASLRQKSRIRWLKLGDQNTTFFHRSVCSRMSRNTLRSLVDSDGTRVSSHDGVAQMAVNYFSNSLGSQEIGYRELSP

Query:  VIDDIVQFQWSEECCQALQLPISREEVRRVLFSMDSGKAPGPDGFFTGFFKGAWSVVGEDFCDAVLHFFETCYLPVGVNATAITLIPKHNGAERLEDFRL
        VIDDIVQFQWSE+CCQALQLPISREEVRRVLFSMDSGKAPGPDGF                              VGVNATAITLIP  NGAERLEDFR 
Subjt:  VIDDIVQFQWSEECCQALQLPISREEVRRVLFSMDSGKAPGPDGFFTGFFKGAWSVVGEDFCDAVLHFFETCYLPVGVNATAITLIPKHNGAERLEDFRL

Query:  ISCCNVLYKCISKILADRLRVWLPSFISSNQSAFVPGRSIIENILLCQELVGGYHLNSGKPRCTLKVDHQKAYDSVNWDFLFGLLIAIGTPLKFVSWIRA
        ISCCN LYKCISKILADRLR WLPSFISSNQSAF+PGRSIIENILLCQELVGGYHLNSGKPRCTLKVD QKAYDSVNWDFLFGLLIAIGTPLK     + 
Subjt:  ISCCNVLYKCISKILADRLRVWLPSFISSNQSAFVPGRSIIENILLCQELVGGYHLNSGKPRCTLKVDHQKAYDSVNWDFLFGLLIAIGTPLKFVSWIRA

Query:  CVTSTMFSIMIW------------------LAEGVKLTYLTFADDLMIFCAADEPSIRFIRECLQKFGELSGLFANPRKSSIFVAGVNNENASHLAACMG
           ST   +M+                     E VKLT+LTFADDLMIFCAA+EPSIRFIRECL+KFGELSGLFANPRKSSIFVAGVNNENASHLA CMG
Subjt:  CVTSTMFSIMIW------------------LAEGVKLTYLTFADDLMIFCAADEPSIRFIRECLQKFGELSGLFANPRKSSIFVAGVNNENASHLAACMG

Query:  FVRGNLPIRYLGLPLLAGRLRSNDYAPLIQRITSRIRSWTARVLSFAGRLQLVRFVLRSLQVYWASVFVLPAYVHHEVDKILISYLWRGKEEGRGGIKVA
        FVRGNL +RYLGLPLLAGRLRSNDYA LIQRITSRIRSWTARVLSFAGRLQLV  VLRS QVY ASVFVLPAYVH+EVDKIL SYLWRGKEEGRGGIKVA
Subjt:  FVRGNLPIRYLGLPLLAGRLRSNDYAPLIQRITSRIRSWTARVLSFAGRLQLVRFVLRSLQVYWASVFVLPAYVHHEVDKILISYLWRGKEEGRGGIKVA

Query:  WVDVCLPFEESGLGIRDGPSWNIASTLKILLLMLTNSGSLWVAWVKAYILKGRSLWDVDSRVGRSWRLRAILRK
        WVDVCLPFEE GLGIRDGPSWNIASTLKIL LMLTNSGSLWVAWV+AYILKGRSLWDVDSRVG+SW LRAILRK
Subjt:  WVDVCLPFEESGLGIRDGPSWNIASTLKILLLMLTNSGSLWVAWVKAYILKGRSLWDVDSRVGRSWRLRAILRK

SwissProt top hits

e value

%identity

Alignment

O00370 LINE-1 retrotransposable element ORF2 protein

4.0e-26

21.15

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Query:  TAVRLEKASLRQKSRIRWLKLGDQNTTFFH----------RSVCSRMSRNTLRSLVDSDGTRVSSHDGVAQMAVNYFSNSLGSQEIGYRELSPVIDDIVQ
        T +R E   +  +  ++  K+ +  + FF           R +  +  +N + ++ +  G   +    +      Y+ +   ++     E+   +D    
Subjt:  TAVRLEKASLRQKSRIRWLKLGDQNTTFFH----------RSVCSRMSRNTLRSLVDSDGTRVSSHDGVAQMAVNYFSNSLGSQEIGYRELSPVIDDIVQ

Query:  FQWSEECCQALQLPISREEVRRVLFSMDSGKAPGPDGFFTGFFKGAWSVVGEDFCDAVLHFFETC----YLPVGVNATAITLIPK-HNGAERLEDFRLIS
         + ++E  ++L  PI+  E+  ++ S+ + K+PGPDGF   F++       E+    +L  F++      LP      +I LIPK      + E+FR IS
Subjt:  FQWSEECCQALQLPISREEVRRVLFSMDSGKAPGPDGFFTGFFKGAWSVVGEDFCDAVLHFFETC----YLPVGVNATAITLIPK-HNGAERLEDFRLIS

Query:  CCNVLYKCISKILADRLRVWLPSFISSNQSAFVPGRSIIENILLCQELVGGYHLNSGKPRCTLKVDHQKAYDSVNWDFLFGLLIAIGTPLKFVSWIRAC-
          N+  K ++KILA+R++  +   I  +Q  F+PG     NI     ++   +    K    + +D +KA+D +   F+   L  +G    ++  IRA  
Subjt:  CCNVLYKCISKILADRLRVWLPSFISSNQSAFVPGRSIIENILLCQELVGGYHLNSGKPRCTLKVDHQKAYDSVNWDFLFGLLIAIGTPLKFVSWIRAC-

Query:  ----------------------------VTSTMFSIMIWL-----------------AEGVKLTYLTFADDLMIFCAADEPSIRFIRECLQKFGELSGLF
                                    ++  +F+I++ +                  E VKL+   FADD++++      S + + + +  F ++SG  
Subjt:  ----------------------------VTSTMFSIMIWL-----------------AEGVKLTYLTFADDLMIFCAADEPSIRFIRECLQKFGELSGLF

Query:  ANPRKSSIFVAGVNNENASHLAACMGFVRGNLPIRYLGLPLL--AGRLRSNDYAPLIQRITSRIRSWTARVLSFAGRLQLVRFVLRSLQVYW--ASVFVL
         N +KS  F+   N +  S +   + F   +  I+YLG+ L      L   +Y PL++ I      W     S+ GR+ +V+  +    +Y   A    L
Subjt:  ANPRKSSIFVAGVNNENASHLAACMGFVRGNLPIRYLGLPLL--AGRLRSNDYAPLIQRITSRIRSWTARVLSFAGRLQLVRFVLRSLQVYW--ASVFVL

Query:  PAYVHHEVDKILISYLWRGK
        P     E++K  + ++W  K
Subjt:  PAYVHHEVDKILISYLWRGK

P0C2F6 Putative ribonuclease H protein At1g65750

5.1e-21

32.2

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Query:  LPLLAGRLRSNDYAPLIQRITSRIRSWTARVLSFAGRLQLVRFVLRSLQVYWASVFVLPAYVHHEVDKILISYLWRGKEEGRGGIKVAWVDVCLPFEESG
        +P+L  R+  + +  +++R++SR+  W  + LSFAGRL L + VL S+ V+  S  +LP  + + +D++  ++LW    E +    V W  VC P +E G
Subjt:  LPLLAGRLRSNDYAPLIQRITSRIRSWTARVLSFAGRLQLVRFVLRSLQVYWASVFVLPAYVHHEVDKILISYLWRGKEEGRGGIKVAWVDVCLPFEESG

Query:  LGIRDGPSWNIASTLKILLLMLTNSGSLWVAWVKAYILKGR---SLWDVDSRVGRS-WRLRAILRKREKLKHLVWMKVGNSNSCRVWLDSWLLGDAILE-
        LG+R   S N A   K+   +L    SLW   ++     G    S W +      S WR  AI   R+ + H V    G+    R W D W+ G  +LE 
Subjt:  LGIRDGPSWNIASTLKILLLMLTNSGSLWVAWVKAYILKGR---SLWDVDSRVGRS-WRLRAILRKREKLKHLVWMKVGNSNSCRVWLDSWLLGDAILE-

Query:  QVGER
          GER
Subjt:  QVGER

P11369 LINE-1 retrotransposable element ORF2 protein

1.6e-22

23.36

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Query:  LQLPISREEVRRVLFSMDSGKAPGPDGFFTGFFKGAWSVVGEDFCDAVLHFFETC----YLPVGVNATAITLIPK-HNGAERLEDFRLISCCNVLYKCIS
        L  PIS +E+  V+ S+ + K+PGPDGF   F++       ED    +   F        LP       ITLIPK      ++E+FR IS  N+  K ++
Subjt:  LQLPISREEVRRVLFSMDSGKAPGPDGFFTGFFKGAWSVVGEDFCDAVLHFFETC----YLPVGVNATAITLIPK-HNGAERLEDFRLISCCNVLYKCIS

Query:  KILADRLRVWLPSFISSNQSAFVPGRSIIENILLCQELVGGYHLNSGKPRCTLKVDHQKAYDSVNWDFLFGLLIAIGTPLKFVSWIRAC-----------
        KILA+R++  + + I  +Q  F+PG     NI     ++   +    K    + +D +KA+D +   F+  +L   G    +++ I+A            
Subjt:  KILADRLRVWLPSFISSNQSAFVPGRSIIENILLCQELVGGYHLNSGKPRCTLKVDHQKAYDSVNWDFLFGLLIAIGTPLKFVSWIRAC-----------

Query:  ------------------VTSTMFSIMIWL-----------------AEGVKLTYLTFADDLMIFCAADEPSIRFIRECLQKFGELSGLFANPRKSSIFV
                          ++  +F+I++ +                  E VK++ L  ADD++++ +  + S R +   +  FGE+ G   N  KS  F+
Subjt:  ------------------VTSTMFSIMIWL-----------------AEGVKLTYLTFADDLMIFCAADEPSIRFIRECLQKFGELSGLFANPRKSSIFV

Query:  AGVNNENASHLAACMGFVRGNLPIRYLGLPLL--AGRLRSNDYAPLIQRITSRIRSWTARVLSFAGRLQLVRFVLRSLQVYW--ASVFVLPAYVHHEVDK
           N +    +     F      I+YLG+ L      L   ++  L + I   +R W     S+ GR+ +V+  +    +Y   A    +P    +E++ 
Subjt:  AGVNNENASHLAACMGFVRGNLPIRYLGLPLL--AGRLRSNDYAPLIQRITSRIRSWTARVLSFAGRLQLVRFVLRSLQVYW--ASVFVLPAYVHHEVDK

Query:  ILISYLWRGKE
         +  ++W  K+
Subjt:  ILISYLWRGKE

P14381 Transposon TX1 uncharacterized 149 kDa protein

9.2e-31

23.52

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Query:  KSRIRWLKLGDQNTTFFHRSVCSRMSRNTLRSLVDSDGTRVSSHDGVAQMAVNYFSNSLGSQEIGYRELSPVIDDIVQFQW------SEECCQALQLPIS
        +SR++ L   D+ + FF+     + +R  +  L   DGT +   + +   A +++ N             P+  D  +  W      SE   + L+ PI+
Subjt:  KSRIRWLKLGDQNTTFFHRSVCSRMSRNTLRSLVDSDGTRVSSHDGVAQMAVNYFSNSLGSQEIGYRELSPVIDDIVQFQW------SEECCQALQLPIS

Query:  REEVRRVLFSMDSGKAPGPDGFFTGFFKGAWSVVGEDFCDAVLHFFETCYLPVGVNATAITLIPKHNGAERLEDFRLISCCNVLYKCISKILADRLRVWL
         +E+ + L  M   K+PG DG    FF+  W  +G DF   +   F+   LP+      ++L+PK      ++++R +S  +  YK ++K ++ RL+  L
Subjt:  REEVRRVLFSMDSGKAPGPDGFFTGFFKGAWSVVGEDFCDAVLHFFETCYLPVGVNATAITLIPKHNGAERLEDFRLISCCNVLYKCISKILADRLRVWL

Query:  PSFISSNQSAFVPGRSIIENILLCQELVGGYHLNSGKPRCTLKVDHQKAYDSVNWDFLFGLLIAIGTPLKFVSWIRA------CVTSTMFSIMIWLAEG-
           I  +QS  VPGR+I +N+ L ++L+  +   +G     L +D +KA+D V+  +L G L A     +FV +++       C+    +S+   LA G 
Subjt:  PSFISSNQSAFVPGRSIIENILLCQELVGGYHLNSGKPRCTLKVDHQKAYDSVNWDFLFGLLIAIGTPLKFVSWIRA------CVTSTMFSIMIWLAEG-

Query:  -------------------------------------VKLTYLTFADDLMIFCAADEPSIRFIRECLQKFGELSGLFANPRKSSIFVAGVNNENASHLAA
                                             +++    +ADD +I  A D   +   +EC + +   S    N  KSS  + G  +     L  
Subjt:  -------------------------------------VKLTYLTFADDLMIFCAADEPSIRFIRECLQKFGELSGLFANPRKSSIFVAGVNNENASHLAA

Query:  CMGFVRGNLP-IRYLGLPLLAGRLR-SNDYAPLIQRITSRIRSWT--ARVLSFAGRLQLVRFVLRSLQVYWASVFVLPAYVH-HEVDKILISYLWRGKEE
            +      I+YLG+ L A     S ++  L + + +R+  W   A+VLS  GR  ++  ++ S Q+++  + + P      ++ + L+ +LW GK  
Subjt:  CMGFVRGNLP-IRYLGLPLLAGRLR-SNDYAPLIQRITSRIRSWT--ARVLSFAGRLQLVRFVLRSLQVYWASVFVLPAYVH-HEVDKILISYLWRGKEE

Query:  GRGGIKVAWVDVCLPFEESGLGI
           G+        LP +E G G+
Subjt:  GRGGIKVAWVDVCLPFEESGLGI

P16423 Retrovirus-related Pol polyprotein from type-2 retrotransposable element R2DM

2.7e-06

27.62

Show/hide

Query:  ISREEVRRVLFSMDSGKAPGPDGFFTGFFKGAWSVVGEDFCDAVLHFFETCYLPVGVNATAITLIPKHNGAERLEDFRLISCCNVLYKCISKILADRLRV
        I+ +++R    S+ S  +PGPDG      K A  V        +        LP  +       IPK   A+R +DFR IS  +VL + ++ ILA RL  
Subjt:  ISREEVRRVLFSMDSGKAPGPDGFFTGFFKGAWSVVGEDFCDAVLHFFETCYLPVGVNATAITLIPKHNGAERLEDFRLISCCNVLYKCISKILADRLRV

Query:  ---WLPSFISSNQSAFVPGRSIIENILLCQELVGGYHLNSGKPRCTLKVDHQKAYDSVNWDFLFGLLIAIGTPLKFVSWIR
           W P      Q  F+P     +N  +  +LV  +     +      +D  KA+DS++   ++  L A G P  FV +++
Subjt:  ---WLPSFISSNQSAFVPGRSIIENILLCQELVGGYHLNSGKPRCTLKVDHQKAYDSVNWDFLFGLLIAIGTPLKFVSWIR

Arabidopsis top hits

e value

%identity

Alignment

AT1G43760.1 DNAse I-like superfamily protein

3.2e-31

40.86

Show/hide

Query:  RQKSRIRWLKLGDQNTTFFHRSVCSRMSRNTLRSLVDSDGTRVSSHDGVAQMAVNYFSNSLGS-QEIGYRELSPVIDDIVQFQWSEECCQALQLPISREE
        RQKSRI+WL+ GD NT FFH+ + +  ++N ++ L   D  RV +   V +M V Y+++ LGS  +I   +    I DI  F+ ++     L    S +E
Subjt:  RQKSRIRWLKLGDQNTTFFHRSVCSRMSRNTLRSLVDSDGTRVSSHDGVAQMAVNYFSNSLGS-QEIGYRELSPVIDDIVQFQWSEECCQALQLPISREE

Query:  VRRVLFSMDSGKAPGPDGFFTGFFKGAWSVVGEDFCDAVLHFFETCYLPVGVNATAITLIPKHNGAERLEDFRLISCCNVLYKCIS
        +   +F+M   KAPGPD F   FF  +W VV +    AV  FF T +L    NATAITLIPK  G ++L  FR +SCC V+YK I+
Subjt:  VRRVLFSMDSGKAPGPDGFFTGFFKGAWSVVGEDFCDAVLHFFETCYLPVGVNATAITLIPKHNGAERLEDFRLISCCNVLYKCIS

AT3G24255.1 RNA-directed DNA polymerase (reverse transcriptase)-related family protein

8.2e-35

34.96

Show/hide

Query:  VAGVNNENASHLAACMGFVRGNLPIRYLGLPLLAGRLRSNDYAPLIQRITSRIRSWTARVLSFAGRLQLVRFVLRSLQVYWASVFVLPAYVHHEVDKILI
        +AGV + + + +     F  G LP+RYLGLPLL  ++ ++DY PL+++I  RI  WTAR LSFAGRLQL+  V+ SL  +W S F LP+    E+D I  
Subjt:  VAGVNNENASHLAACMGFVRGNLPIRYLGLPLLAGRLRSNDYAPLIQRITSRIRSWTARVLSFAGRLQLVRFVLRSLQVYWASVFVLPAYVHHEVDKILI

Query:  SYLWRGKEEGRGGIKVAWVDVCLPFEESGLGIRDGPSWNIASTLKILLLMLTNSGSLWVAWVKAYILKGRSLWDVDSRVGRSWRLRAILRKREKLKHLVW
        S+LW G E      KVAW DVC P +E GLGIR               L   N GS W        + G      ++ +G SW  + IL+ R      V 
Subjt:  SYLWRGKEEGRGGIKVAWVDVCLPFEESGLGIRDGPSWNIASTLKILLLMLTNSGSLWVAWVKAYILKGRSLWDVDSRVGRSWRLRAILRKREKLKHLVW

Query:  MKVGNSNSCRVWLDSWLLGDAILEQVGERVMYDAASWREARLSDFI
          + N ++   W D+W     +++  G R   D      A +++ +
Subjt:  MKVGNSNSCRVWLDSWLLGDAILEQVGERVMYDAASWREARLSDFI

AT3G25720.1 RNA-directed DNA polymerase (reverse transcriptase)-related family protein

1.2e-12

31.3

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Query:  VDVCLPFEESGLGIRDGPSWNIASTLKILLLMLTNSGSLWVAWVKAYILKG------RSLWDVDSRVGRSWRLRAILRKREKLKHLVWMKVGNSNSCRVW
        + VCLP  E GLG+R    WN    LK++  + +  GSLWV W + + L+G         W     V  SW  + +LR R   +  +   +GN  + R W
Subjt:  VDVCLPFEESGLGIRDGPSWNIASTLKILLLMLTNSGSLWVAWVKAYILKG------RSLWDVDSRVGRSWRLRAILRKREKLKHLVWMKVGNSNSCRVW

Query:  LDSWLLGDAILEQVG
         D+W     +L  +G
Subjt:  LDSWLLGDAILEQVG

AT4G20520.1 RNA binding;RNA-directed DNA polymerases

1.3e-08

37.18

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Query:  LADRLRVWLPSFISSNQSAFVPGRSIIENILLCQELVGGYHLNSG-KPRCTLKVDHQKAYDSVNWDFLFGLLIAIGTP
        + +RL+  + + I   Q++F+PGR   +NI+  QE V       G K    LK+D +KAYD + WD+L   LI+ G P
Subjt:  LADRLRVWLPSFISSNQSAFVPGRSIIENILLCQELVGGYHLNSG-KPRCTLKVDHQKAYDSVNWDFLFGLLIAIGTP

AT4G29090.1 Ribonuclease H-like superfamily protein

1.3e-08

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Query:  SLQVYWASVFVLPAYVHHEVDKILISYLWRGKEEGRGGIKVAWVDVCLPFEESGLGIRDGPSWNIASTLKILLLMLTNSGSLWVAWVKA-YILKGRSL-W
        +L  Y  + F+LP  V  ++  +L  + WR K+E +G    AW  +     E G+G +D  ++N+A   K +  ML+   SL     K+ Y  K   L  
Subjt:  SLQVYWASVFVLPAYVHHEVDKILISYLWRGKEEGRGGIKVAWVDVCLPFEESGLGIRDGPSWNIASTLKILLLMLTNSGSLWVAWVKA-YILKGRSL-W

Query:  DVDSRVGRSWRLRAILRKREKLKHLVWMKVGNSNSCRVWLDSWL---LGDAILEQVGERVMYDAASWREARLSDFIDPDG-EW-------LWPRVSLDLI
         + SR    W  ++I   +E L+      VGN     +W   WL      A L          A+     ++SD ID  G EW       L+P V   LI
Subjt:  DVDSRVGRSWRLRAILRKREKLKHLVWMKVGNSNSCRVWLDSWL---LGDAILEQVGERVMYDAASWREARLSDFIDPDG-EW-------LWPRVSLDLI

Sequences

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CDS sequence

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ATGTCGGATGTTTTGAGTCACCAAGCAGGTCTTGCTACGGAGACTTTCTGGACAGCAGTTAGATTGGAGAAAGCCTCGCTTCGGCAGAAATCCAGAATACGATGGTTAAA
GCTGGGTGATCAGAATACGACTTTTTTCCATCGATCAGTCTGCTCTCGTATGAGTCGTAACACTCTACGTTCTCTAGTTGATTCTGATGGAACCAGGGTGTCTTCACATG
ATGGGGTGGCTCAGATGGCGGTTAATTATTTTAGTAACAGTTTGGGATCCCAGGAGATTGGCTATAGAGAATTATCCCCAGTCATTGATGATATTGTCCAGTTCCAGTGG
TCTGAGGAGTGTTGTCAGGCGTTACAGTTGCCTATTAGTAGGGAGGAAGTTAGGAGGGTCTTATTCTCTATGGATAGTGGAAAGGCCCCGGGTCCTGACGGATTCTTTAC
AGGTTTCTTTAAAGGTGCCTGGTCTGTGGTTGGGGAAGATTTTTGTGATGCGGTTCTACATTTCTTTGAGACATGTTACCTTCCAGTGGGAGTTAATGCTACTGCTATCA
CCCTCATTCCTAAACATAATGGGGCGGAGCGTTTGGAGGATTTTCGTCTTATTTCTTGTTGTAATGTGTTATATAAATGCATTTCTAAAATTCTAGCGGATAGACTTCGT
GTGTGGCTTCCTTCTTTTATCAGTAGTAATCAGTCTGCTTTTGTTCCTGGGAGGAGTATTATCGAGAACATTCTGCTTTGTCAGGAACTGGTGGGTGGATATCATCTTAA
CTCCGGTAAGCCTCGTTGTACTTTGAAAGTTGATCATCAAAAAGCATATGACTCTGTTAATTGGGATTTTCTGTTTGGTTTGCTGATTGCTATTGGTACTCCGTTGAAAT
TTGTGAGTTGGATTAGGGCCTGTGTTACATCCACTATGTTCTCTATTATGATTTGGCTCGCTGAAGGGGTTAAGTTAACCTATCTGACCTTCGCTGATGACCTTATGATT
TTTTGTGCTGCTGATGAGCCCTCTATCAGATTTATTAGAGAATGTCTTCAGAAGTTTGGTGAGCTTTCAGGTTTGTTCGCAAATCCTAGGAAAAGCTCTATTTTTGTTGC
AGGAGTTAATAATGAGAATGCTTCTCATCTGGCTGCTTGTATGGGTTTTGTCCGTGGAAATCTCCCTATTCGTTATCTTGGCCTTCCTCTTTTGGCTGGTCGTTTACGTT
CTAATGATTATGCTCCTCTGATTCAGCGTATAACTAGCAGGATTCGTTCTTGGACCGCTCGAGTTCTTTCGTTTGCAGGTAGACTGCAGCTTGTTCGTTTTGTGCTTCGT
AGTCTGCAAGTGTATTGGGCTAGTGTGTTTGTTCTTCCTGCGTATGTGCACCATGAGGTGGACAAGATTCTCATATCTTATCTTTGGAGGGGTAAGGAGGAAGGTAGAGG
AGGTATTAAAGTGGCTTGGGTGGATGTGTGTCTTCCCTTTGAGGAGAGCGGCCTTGGTATTCGAGATGGCCCTTCTTGGAATATTGCGAGTACTTTGAAGATTTTGTTGC
TTATGTTGACTAATTCGGGGTCTCTTTGGGTGGCTTGGGTGAAAGCTTATATACTGAAAGGGAGGTCTTTGTGGGATGTGGATAGTAGAGTGGGTCGATCTTGGCGTCTT
CGGGCGATCTTACGTAAGCGAGAGAAGCTGAAGCATCTTGTTTGGATGAAGGTAGGAAATAGTAATAGTTGTAGAGTTTGGCTTGATTCGTGGTTGTTGGGAGATGCCAT
TTTGGAGCAGGTTGGGGAGAGAGTAATGTATGATGCAGCTAGTTGGAGGGAGGCTAGACTCTCTGACTTTATTGACCCTGATGGAGAATGGCTTTGGCCACGAGTTTCTT
TGGATTTAATTGACTTATGGGAGAGGGTTCAGGAGGTCAGTCTGTGTCTTAGTGTTAGTGATAGTTGGGTATGGGTTCCTGGTCGTTAG

mRNA sequence

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Protein sequence

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MSDVLSHQAGLATETFWTAVRLEKASLRQKSRIRWLKLGDQNTTFFHRSVCSRMSRNTLRSLVDSDGTRVSSHDGVAQMAVNYFSNSLGSQEIGYRELSPVIDDIVQFQW
SEECCQALQLPISREEVRRVLFSMDSGKAPGPDGFFTGFFKGAWSVVGEDFCDAVLHFFETCYLPVGVNATAITLIPKHNGAERLEDFRLISCCNVLYKCISKILADRLR
VWLPSFISSNQSAFVPGRSIIENILLCQELVGGYHLNSGKPRCTLKVDHQKAYDSVNWDFLFGLLIAIGTPLKFVSWIRACVTSTMFSIMIWLAEGVKLTYLTFADDLMI
FCAADEPSIRFIRECLQKFGELSGLFANPRKSSIFVAGVNNENASHLAACMGFVRGNLPIRYLGLPLLAGRLRSNDYAPLIQRITSRIRSWTARVLSFAGRLQLVRFVLR
SLQVYWASVFVLPAYVHHEVDKILISYLWRGKEEGRGGIKVAWVDVCLPFEESGLGIRDGPSWNIASTLKILLLMLTNSGSLWVAWVKAYILKGRSLWDVDSRVGRSWRL
RAILRKREKLKHLVWMKVGNSNSCRVWLDSWLLGDAILEQVGERVMYDAASWREARLSDFIDPDGEWLWPRVSLDLIDLWERVQEVSLCLSVSDSWVWVPGR

IVF0020560 (gene) of Melon (IVF77) v1 genome