CuGenDBv2

Gene ID	IVF0020566
Organism	Cucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Photosystem I reaction centre subunit N
Genome location	chr01:914463..915922
RNA-Seq Expression	IVF0020566
Synteny	IVF0020566
Gene Ontology terms	GO:0015979 - photosynthesis (biological process) GO:0009507 - chloroplast (cellular component) GO:0009522 - photosystem I (cellular component)
InterPro domains	IPR008796 - Photosystem I reaction centre subunit N, chloroplastic

Homology

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GenBank top hits

e value

%identity

Alignment

XP_004136934.1 uncharacterized protein LOC101214221 [Cucumis sativus]

7.23e-67

93.85

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Query:  MSSIGQSILMALAVTLNKFASSNVQSVQRNKATAT--VSSPIGRRDLLLSTVAPASTAAAAAAVDSRTELLKRYLKKSEENKEKNDKERLESYYKRNYKD
        MSSIGQSILMALAVTLNKFASSNVQSVQRNKATAT  VSSPIGRR LLLST+APAS AAAA+ VDSRTELLKRYLKKSEENKEKNDKERLESYYKRNYKD
Subjt:  MSSIGQSILMALAVTLNKFASSNVQSVQRNKATAT--VSSPIGRRDLLLSTVAPASTAAAAAAVDSRTELLKRYLKKSEENKEKNDKERLESYYKRNYKD

Query:  YFEFVEGSVKNKNELSEAEKGIVEWLKRNK
        YFEFVEGSVKNKNELSEAEKGIVEWLKR+K
Subjt:  YFEFVEGSVKNKNELSEAEKGIVEWLKRNK

XP_008455049.1 PREDICTED: uncharacterized protein LOC103495319 [Cucumis melo]

1.17e-74

100

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Query:  MSSIGQSILMALAVTLNKFASSNVQSVQRNKATATVSSPIGRRDLLLSTVAPASTAAAAAAVDSRTELLKRYLKKSEENKEKNDKERLESYYKRNYKDYF
        MSSIGQSILMALAVTLNKFASSNVQSVQRNKATATVSSPIGRRDLLLSTVAPASTAAAAAAVDSRTELLKRYLKKSEENKEKNDKERLESYYKRNYKDYF
Subjt:  MSSIGQSILMALAVTLNKFASSNVQSVQRNKATATVSSPIGRRDLLLSTVAPASTAAAAAAVDSRTELLKRYLKKSEENKEKNDKERLESYYKRNYKDYF

Query:  EFVEGSVKNKNELSEAEKGIVEWLKRNK
        EFVEGSVKNKNELSEAEKGIVEWLKRNK
Subjt:  EFVEGSVKNKNELSEAEKGIVEWLKRNK

XP_022148828.1 uncharacterized protein LOC111017388 isoform X1 [Momordica charantia]

1.31e-54

78.91

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Query:  MSSIGQSILMALAVTLNKFASSNVQSVQRNKATATVSSPIGRRDLLLSTVAPASTAAAAAAVDSRTELLKRYLKKSEENKEKNDKERLESYYKRNYKDYF
        MSSIGQSILMALAVT+NKFASSNVQSV RN++ A  +S IGRR LL S VA     AA A VDSRTELLKRYLKKSE+NKEKNDKERL+SYYKRNYKDYF
Subjt:  MSSIGQSILMALAVTLNKFASSNVQSVQRNKATATVSSPIGRRDLLLSTVAPASTAAAAAAVDSRTELLKRYLKKSEENKEKNDKERLESYYKRNYKDYF

Query:  EFVEGSVKNKNELSEAEKGIVEWLKRNK
        EFVEGSV+NK+ELSE EK I+EWL+RNK
Subjt:  EFVEGSVKNKNELSEAEKGIVEWLKRNK

XP_022989008.1 uncharacterized protein LOC111486201 [Cucurbita maxima]

3.79e-55

79.26

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Query:  MSSIGQSILMALAVTLNKFASSNVQSVQRNK-------ATATVSSPIGRRDLLLSTVAPASTAAAAAAVDSRTELLKRYLKKSEENKEKNDKERLESYYK
        MSSIGQ+ILMALA+TLN+FASSNVQSVQRNK       AT + SS I RR LLLS       AA AAAVDSRTELLKRYLKKSEENKEKNDKERLES+YK
Subjt:  MSSIGQSILMALAVTLNKFASSNVQSVQRNK-------ATATVSSPIGRRDLLLSTVAPASTAAAAAAVDSRTELLKRYLKKSEENKEKNDKERLESYYK

Query:  RNYKDYFEFVEGSVKNKNELSEAEKGIVEWLKRNK
        RNYKDYFEFVEGS+KNK+ELSEAEKGI+EWLKRNK
Subjt:  RNYKDYFEFVEGSVKNKNELSEAEKGIVEWLKRNK

XP_038887440.1 uncharacterized protein LOC120077574 [Benincasa hispida]

5.94e-60

85.07

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Query:  MSSIGQSILMALAVTLNKFASSNVQSVQRNKA------TATVSSPIGRRDLLLSTVAPASTAAAAAAVDSRTELLKRYLKKSEENKEKNDKERLESYYKR
        MSSIGQSILMALAVTLNKFASSNVQSVQRN+A      TAT  S IGRR LLLS VA A+ A    AVDSRTELLKRYLKKSEENKEKNDKERLESYYKR
Subjt:  MSSIGQSILMALAVTLNKFASSNVQSVQRNKA------TATVSSPIGRRDLLLSTVAPASTAAAAAAVDSRTELLKRYLKKSEENKEKNDKERLESYYKR

Query:  NYKDYFEFVEGSVKNKNELSEAEKGIVEWLKRNK
        NYKDYFEFVEGSVKNKNELSEAEKGI+EWLKRNK
Subjt:  NYKDYFEFVEGSVKNKNELSEAEKGIVEWLKRNK

TrEMBL top hits

e value

%identity

Alignment

A0A1S3C176 uncharacterized protein LOC103495319

9.9e-57

100

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Query:  MSSIGQSILMALAVTLNKFASSNVQSVQRNKATATVSSPIGRRDLLLSTVAPASTAAAAAAVDSRTELLKRYLKKSEENKEKNDKERLESYYKRNYKDYF
        MSSIGQSILMALAVTLNKFASSNVQSVQRNKATATVSSPIGRRDLLLSTVAPASTAAAAAAVDSRTELLKRYLKKSEENKEKNDKERLESYYKRNYKDYF
Subjt:  MSSIGQSILMALAVTLNKFASSNVQSVQRNKATATVSSPIGRRDLLLSTVAPASTAAAAAAVDSRTELLKRYLKKSEENKEKNDKERLESYYKRNYKDYF

Query:  EFVEGSVKNKNELSEAEKGIVEWLKRNK
        EFVEGSVKNKNELSEAEKGIVEWLKRNK
Subjt:  EFVEGSVKNKNELSEAEKGIVEWLKRNK

A0A2I4HLI8 uncharacterized protein LOC109019213

6.9e-34

68.15

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Query:  MSSIGQSILMALAVTLNKFASSNVQSVQR------NKATATVSSPIGRRDLLLSTVAPASTAAAAAAVDSRTELLKRYLKKSEENKEKNDKERLESYYKR
        MSSIGQSILMAL VT+N+FASSNVQ+V R      +  T T +S IGRR LLLST+      AA    DSRT+LLK+YLKKSEENK KNDKERL+SYYKR
Subjt:  MSSIGQSILMALAVTLNKFASSNVQSVQR------NKATATVSSPIGRRDLLLSTVAPASTAAAAAAVDSRTELLKRYLKKSEENKEKNDKERLESYYKR

Query:  NYKDYFEFVEGSVK-NKNELSEAEKGIVEWLKRNK
        NYKDYFEFVEG+ K N+ +LSEAEKGI++WL+RNK
Subjt:  NYKDYFEFVEGSVK-NKNELSEAEKGIVEWLKRNK

A0A6J1D574 uncharacterized protein LOC111017388 isoform X1

2.0e-41

78.91

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Query:  MSSIGQSILMALAVTLNKFASSNVQSVQRNKATATVSSPIGRRDLLLSTVAPASTAAAAAAVDSRTELLKRYLKKSEENKEKNDKERLESYYKRNYKDYF
        MSSIGQSILMALAVT+NKFASSNVQSV RN++ A  +S IGRR LL S V     AAA A VDSRTELLKRYLKKSE+NKEKNDKERL+SYYKRNYKDYF
Subjt:  MSSIGQSILMALAVTLNKFASSNVQSVQRNKATATVSSPIGRRDLLLSTVAPASTAAAAAAVDSRTELLKRYLKKSEENKEKNDKERLESYYKRNYKDYF

Query:  EFVEGSVKNKNELSEAEKGIVEWLKRNK
        EFVEGSV+NK+ELSE EK I+EWL+RNK
Subjt:  EFVEGSVKNKNELSEAEKGIVEWLKRNK

A0A6J1EM63 uncharacterized protein LOC111434615

7.6e-41

75.71

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Query:  MSSIGQSILMALAVTLNKFASSNVQSVQRNK------------ATATVSSPIGRRDLLLSTVAPASTAAAAAAVDSRTELLKRYLKKSEENKEKNDKERL
        MSSIGQ+ILMALA+TLN+FASSNVQSVQRNK            A+ + SS I RR LLLS       AA AAAVDSRTELLKRYLKKSEENKEKNDKERL
Subjt:  MSSIGQSILMALAVTLNKFASSNVQSVQRNK------------ATATVSSPIGRRDLLLSTVAPASTAAAAAAVDSRTELLKRYLKKSEENKEKNDKERL

Query:  ESYYKRNYKDYFEFVEGSVKNKNELSEAEKGIVEWLKRNK
        ES+YKRNYKDYFEFVEGS+KNK+ELSEAEKGI+EWLKRNK
Subjt:  ESYYKRNYKDYFEFVEGSVKNKNELSEAEKGIVEWLKRNK

A0A6J1JNZ7 uncharacterized protein LOC111486201

6.9e-42

79.26

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Query:  MSSIGQSILMALAVTLNKFASSNVQSVQRNK-------ATATVSSPIGRRDLLLSTVAPASTAAAAAAVDSRTELLKRYLKKSEENKEKNDKERLESYYK
        MSSIGQ+ILMALA+TLN+FASSNVQSVQRNK       AT + SS I RR LLLS       AA AAAVDSRTELLKRYLKKSEENKEKNDKERLES+YK
Subjt:  MSSIGQSILMALAVTLNKFASSNVQSVQRNK-------ATATVSSPIGRRDLLLSTVAPASTAAAAAAVDSRTELLKRYLKKSEENKEKNDKERLESYYK

Query:  RNYKDYFEFVEGSVKNKNELSEAEKGIVEWLKRNK
        RNYKDYFEFVEGS+KNK+ELSEAEKGI+EWLKRNK
Subjt:  RNYKDYFEFVEGSVKNKNELSEAEKGIVEWLKRNK

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT1G49975.1 INVOLVED IN: photosynthesis; LOCATED IN: photosystem I, chloroplast, thylakoid membrane; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Photosystem I reaction centre subunit N (InterPro:IPR008796); Has 34 Blast hits to 34 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 34; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

1.7e-32

63.43

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Query:  MSSIGQSILMALAVTLNKFASSNVQSVQRN--KATATVSSP--IGRRDLLLSTVAPASTAAAAAAVDSRTELLKRYLKKSEENKEKNDKERLESYYKRNY
        MSSI QSILMAL VT+NK+ASSNVQ+V+RN  K  +  + P  +GRR++L S     ST+  AAA+ S  +LL++YLKK+EENK KNDKERL+S+YKRNY
Subjt:  MSSIGQSILMALAVTLNKFASSNVQSVQRN--KATATVSSP--IGRRDLLLSTVAPASTAAAAAAVDSRTELLKRYLKKSEENKEKNDKERLESYYKRNY

Query:  KDYFEFVEGSVKNKN--ELSEAEKGIVEWLKRNK
        KDYFEFVEGS+K K   ELSE+EK I+EWLK NK
Subjt:  KDYFEFVEGSVKNKN--ELSEAEKGIVEWLKRNK

Sequences

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CDS sequence

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ATGAGTTCCATAGGCCAAAGCATTCTGATGGCCCTCGCCGTCACTCTCAACAAATTTGCTTCTTCCAACGTTCAATCCGTTCAAAGAAACAAAGCCACCGCCACCGTTTC
TTCACCAATTGGAAGAAGAGACCTCCTCTTGTCCACTGTCGCCCCCGCCTCCACCGCCGCCGCCGCCGCCGCGGTCGACTCCAGAACTGAGCTGCTAAAAAGGTACCTCA
AGAAGTCTGAAGAAAACAAAGAAAAGAATGACAAGGAGAGATTGGAAAGTTACTACAAGCGAAACTACAAAGATTATTTTGAGTTTGTTGAAGGATCAGTGAAGAATAAG
AACGAACTTTCGGAAGCTGAAAAAGGTATTGTCGAGTGGCTTAAACGAAATAAATAA

mRNA sequence

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AAATTTTGTTATATGTGACCAAGAAAGCCTCATCTCTTGTTGAACCTCATCCTCAAACTCAAAGAAAAAAAACTACCACTCTCCTCCCCATGAGTTCCATAGGCCAAAGC
ATTCTGATGGCCCTCGCCGTCACTCTCAACAAATTTGCTTCTTCCAACGTTCAATCCGTTCAAAGAAACAAAGCCACCGCCACCGTTTCTTCACCAATTGGAAGAAGAGA
CCTCCTCTTGTCCACTGTCGCCCCCGCCTCCACCGCCGCCGCCGCCGCCGCGGTCGACTCCAGAACTGAGCTGCTAAAAAGGTACCTCAAGAAGTCTGAAGAAAACAAAG
AAAAGAATGACAAGGAGAGATTGGAAAGTTACTACAAGCGAAACTACAAAGATTATTTTGAGTTTGTTGAAGGATCAGTGAAGAATAAGAACGAACTTTCGGAAGCTGAA
AAAGGTATTGTCGAGTGGCTTAAACGAAATAAATAAAAGAGTATACTTTTTCATTTTTAGTTACCATAAATATAACAATAGTCTTAGTTCAT

Protein sequence

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MSSIGQSILMALAVTLNKFASSNVQSVQRNKATATVSSPIGRRDLLLSTVAPASTAAAAAAVDSRTELLKRYLKKSEENKEKNDKERLESYYKRNYKDYFEFVEGSVKNK
NELSEAEKGIVEWLKRNK

IVF0020566 (gene) of Melon (IVF77) v1 genome