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IVF0020627 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0020627
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionRibonuclease H
Genome locationchr03:5247510..5247800
RNA-Seq ExpressionIVF0020627
SyntenyIVF0020627
Gene Ontology termsGO:0006278 - RNA-dependent DNA biosynthetic process (biological process)
GO:0006310 - DNA recombination (biological process)
GO:0015074 - DNA integration (biological process)
GO:0090502 - RNA phosphodiester bond hydrolysis, endonucleolytic (biological process)
GO:0005634 - nucleus (cellular component)
GO:0030430 - host cell cytoplasm (cellular component)
GO:0003723 - RNA binding (molecular function)
GO:0003887 - DNA-directed DNA polymerase activity (molecular function)
GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR036397 - Ribonuclease H superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0033219.1 Pol polyprotein [Cucumis melo var. makuwa]7.65e-5490.62Show/hide
Query:  MSVTYKDWHEMLPFTLHGYRISVRTSTGAIPFSLAYGFEAVLPVEVEVPFLRVIQEVELDEAKWTQVRYEQLNFIEERRLTALCRGQLNQKKIARA
        MSVTY+DWHEMLPF LHGYRISVRTSTG+ PFSL YGFEAVLPVEVEVP LRVIQE+ELDEAKW QVRYEQLNFIEERRLTALCRGQL QKKIARA
Subjt:  MSVTYKDWHEMLPFTLHGYRISVRTSTGAIPFSLAYGFEAVLPVEVEVPFLRVIQEVELDEAKWTQVRYEQLNFIEERRLTALCRGQLNQKKIARA

KAA0046610.1 Pol polyprotein [Cucumis melo var. makuwa]1.90e-5089.77Show/hide
Query:  MSVTYKDWHEMLPFTLHGYRISVRTSTGAIPFSLAYGFEAVLPVEVEVPFLRVIQEVELDEAKWTQVRYEQLNFIEERRLTALCRGQL
        MSVTY+DWHEMLPF LHGYRISVRTSTG+ PFSL YGFEAVLPVEVEVP LRVIQE++LDEAKW QVRYEQLNFIEERRLTALCRGQL
Subjt:  MSVTYKDWHEMLPFTLHGYRISVRTSTGAIPFSLAYGFEAVLPVEVEVPFLRVIQEVELDEAKWTQVRYEQLNFIEERRLTALCRGQL

KAA0060778.1 Pol polyprotein [Cucumis melo var. makuwa]3.15e-5086.17Show/hide
Query:  MSVTYKDWHEMLPFTLHGYRISVRTSTGAIPFSLAYGFEAVLPVEVEVPFLRVIQEVELDEAKWTQVRYEQLNFIEERRLTALCRGQLNQKKIA
        MSVTY+DWHEMLPF LHGYRISVRTSTG+ P SL YGFEAVLPVEVEV  LRVIQEVELDEAKW QVRY+QLNFIEER LTALC+GQL QKKIA
Subjt:  MSVTYKDWHEMLPFTLHGYRISVRTSTGAIPFSLAYGFEAVLPVEVEVPFLRVIQEVELDEAKWTQVRYEQLNFIEERRLTALCRGQLNQKKIA

KAA0065292.1 RNA-directed DNA polymerase [Cucumis melo var. makuwa]1.57e-5089.58Show/hide
Query:  MSVTYKDWHEMLPFTLHGYRISVRTSTGAIPFSLAYGFEAVLPVEVEVPFLRVIQEVELDEAKWTQVRYEQLNFIEERRLTALCRGQLNQKKIARA
        MSVTY+DWHEMLPF L+GYRISVRTSTG+ PFSL YGFEAVLPVEVEVP LRVIQE+ELDEAKW QVRYEQLNFIEERRLTALCRGQL QKKIARA
Subjt:  MSVTYKDWHEMLPFTLHGYRISVRTSTGAIPFSLAYGFEAVLPVEVEVPFLRVIQEVELDEAKWTQVRYEQLNFIEERRLTALCRGQLNQKKIARA

TYK15866.1 Pol polyprotein [Cucumis melo var. makuwa]4.89e-4681.25Show/hide
Query:  MSVTYKDWHEMLPFTLHGYRISVRTSTGAIPFSLAYGFEAVLPVEVEVPFLRVIQEVELDEAKWTQVRYEQLNFIEERRLTALCRGQLNQKKIARA
        M V Y+DWHEMLPF L+GYRISVRTSTGA  FSL YGFE +LP+EVEV  L VIQEVELDE KW QVRYEQLNFIEERRLTALCRGQL QKKIA A
Subjt:  MSVTYKDWHEMLPFTLHGYRISVRTSTGAIPFSLAYGFEAVLPVEVEVPFLRVIQEVELDEAKWTQVRYEQLNFIEERRLTALCRGQLNQKKIARA

TrEMBL top hitse value%identityAlignment
A0A5A7SVL0 Pol polyprotein4.4e-4190.62Show/hide
Query:  MSVTYKDWHEMLPFTLHGYRISVRTSTGAIPFSLAYGFEAVLPVEVEVPFLRVIQEVELDEAKWTQVRYEQLNFIEERRLTALCRGQLNQKKIARA
        MSVTY+DWHEMLPF LHGYRISVRTSTG+ PFSL YGFEAVLPVEVEVP LRVIQE+ELDEAKW QVRYEQLNFIEERRLTALCRGQL QKKIARA
Subjt:  MSVTYKDWHEMLPFTLHGYRISVRTSTGAIPFSLAYGFEAVLPVEVEVPFLRVIQEVELDEAKWTQVRYEQLNFIEERRLTALCRGQLNQKKIARA

A0A5A7TU03 Pol polyprotein2.2e-3789.77Show/hide
Query:  MSVTYKDWHEMLPFTLHGYRISVRTSTGAIPFSLAYGFEAVLPVEVEVPFLRVIQEVELDEAKWTQVRYEQLNFIEERRLTALCRGQL
        MSVTY+DWHEMLPF LHGYRISVRTSTG+ PFSL YGFEAVLPVEVEVP LRVIQE++LDEAKW QVRYEQLNFIEERRLTALCRGQL
Subjt:  MSVTYKDWHEMLPFTLHGYRISVRTSTGAIPFSLAYGFEAVLPVEVEVPFLRVIQEVELDEAKWTQVRYEQLNFIEERRLTALCRGQL

A0A5A7UZT9 Pol polyprotein3.8e-3786.17Show/hide
Query:  MSVTYKDWHEMLPFTLHGYRISVRTSTGAIPFSLAYGFEAVLPVEVEVPFLRVIQEVELDEAKWTQVRYEQLNFIEERRLTALCRGQLNQKKIA
        MSVTY+DWHEMLPF LHGYRISVRTSTG+ P SL YGFEAVLPVEVEV  LRVIQEVELDEAKW QVRY+QLNFIEER LTALC+GQL QKKIA
Subjt:  MSVTYKDWHEMLPFTLHGYRISVRTSTGAIPFSLAYGFEAVLPVEVEVPFLRVIQEVELDEAKWTQVRYEQLNFIEERRLTALCRGQLNQKKIA

A0A5A7VAF2 RNA-directed DNA polymerase2.8e-4089.58Show/hide
Query:  MSVTYKDWHEMLPFTLHGYRISVRTSTGAIPFSLAYGFEAVLPVEVEVPFLRVIQEVELDEAKWTQVRYEQLNFIEERRLTALCRGQLNQKKIARA
        MSVTY+DWHEMLPF L+GYRISVRTSTG+ PFSL YGFEAVLPVEVEVP LRVIQE+ELDEAKW QVRYEQLNFIEERRLTALCRGQL QKKIARA
Subjt:  MSVTYKDWHEMLPFTLHGYRISVRTSTGAIPFSLAYGFEAVLPVEVEVPFLRVIQEVELDEAKWTQVRYEQLNFIEERRLTALCRGQLNQKKIARA

A0A5D3CZI6 Pol polyprotein8.0e-3581.25Show/hide
Query:  MSVTYKDWHEMLPFTLHGYRISVRTSTGAIPFSLAYGFEAVLPVEVEVPFLRVIQEVELDEAKWTQVRYEQLNFIEERRLTALCRGQLNQKKIARA
        M V Y+DWHEMLPF L+GYRISVRTSTGA  FSL YGFE +LP+EVEV  L VIQEVELDE KW QVRYEQLNFIEERRLTALCRGQL QKKIA A
Subjt:  MSVTYKDWHEMLPFTLHGYRISVRTSTGAIPFSLAYGFEAVLPVEVEVPFLRVIQEVELDEAKWTQVRYEQLNFIEERRLTALCRGQLNQKKIARA

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCGGTCACTTATAAAGATTGGCATGAAATGCTACCTTTCACATTGCATGGATATAGAATATCAGTTCGCACGTCAACAGGGGCAATCCCTTTTTCACTAGCGTATGG
TTTCGAAGCAGTTTTACCTGTTGAAGTTGAGGTGCCATTTCTTAGGGTAATCCAAGAGGTAGAACTAGATGAAGCAAAGTGGACTCAAGTAAGGTACGAGCAATTGAATT
TCATAGAAGAAAGGAGACTGACTGCACTATGTAGAGGACAGTTGAACCAAAAGAAAATAGCACGAGCGTAG
mRNA sequenceShow/hide mRNA sequence
ATGTCGGTCACTTATAAAGATTGGCATGAAATGCTACCTTTCACATTGCATGGATATAGAATATCAGTTCGCACGTCAACAGGGGCAATCCCTTTTTCACTAGCGTATGG
TTTCGAAGCAGTTTTACCTGTTGAAGTTGAGGTGCCATTTCTTAGGGTAATCCAAGAGGTAGAACTAGATGAAGCAAAGTGGACTCAAGTAAGGTACGAGCAATTGAATT
TCATAGAAGAAAGGAGACTGACTGCACTATGTAGAGGACAGTTGAACCAAAAGAAAATAGCACGAGCGTAG
Protein sequenceShow/hide protein sequence
MSVTYKDWHEMLPFTLHGYRISVRTSTGAIPFSLAYGFEAVLPVEVEVPFLRVIQEVELDEAKWTQVRYEQLNFIEERRLTALCRGQLNQKKIARA