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IVF0020650 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0020650
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Descriptionmediator of RNA polymerase II transcription subunit 15a
Genome locationchr01:2003353..2008583
RNA-Seq ExpressionIVF0020650
SyntenyIVF0020650
Gene Ontology termsGO:0045893 - positive regulation of transcription, DNA-templated (biological process)
GO:0005634 - nucleus (cellular component)
GO:0003713 - transcription coactivator activity (molecular function)
GO:0031490 - chromatin DNA binding (molecular function)
InterPro domainsIPR036529 - Coactivator CBP, KIX domain superfamily
IPR036546 - Mediator complex subunit 15, KIX domain
IPR044661 - Mediator of RNA polymerase II transcription subunit 15a/b/c-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0031518.1 mediator of RNA polymerase II transcription subunit 15a [Cucumis melo var. makuwa]8.74e-53100Show/hide
Query:  MAVRFEEKIYTQASRQLDYLKKISLKMLIIESVTQHPMGNSLPSNRINNIEDPELEYLSEDELFTKMIEEEWNWGKVMGFIAKIK
        MAVRFEEKIYTQASRQLDYLKKISLKMLIIESVTQHPMGNSLPSNRINNIEDPELEYLSEDELFTKMIEEEWNWGKVMGFIAKIK
Subjt:  MAVRFEEKIYTQASRQLDYLKKISLKMLIIESVTQHPMGNSLPSNRINNIEDPELEYLSEDELFTKMIEEEWNWGKVMGFIAKIK
XP_016901727.1 PREDICTED: mediator of RNA polymerase II transcription subunit 15a [Cucumis melo]9.69e-100100Show/hide
Query:  MDTNNCRPTQGGIEAGDWRPQLHPDCRSWIVEKITETLKRHHSVSGQEGLSELRKMAVRFEEKIYTQASRQLDYLKKISLKMLIIESVTQHPMGNSLPSN
        MDTNNCRPTQGGIEAGDWRPQLHPDCRSWIVEKITETLKRHHSVSGQEGLSELRKMAVRFEEKIYTQASRQLDYLKKISLKMLIIESVTQHPMGNSLPSN
Subjt:  MDTNNCRPTQGGIEAGDWRPQLHPDCRSWIVEKITETLKRHHSVSGQEGLSELRKMAVRFEEKIYTQASRQLDYLKKISLKMLIIESVTQHPMGNSLPSN

Query:  RINNIEDPELEYLSEDELFTKMIEEEWNWGKVMGFIAKIK
        RINNIEDPELEYLSEDELFTKMIEEEWNWGKVMGFIAKIK
Subjt:  RINNIEDPELEYLSEDELFTKMIEEEWNWGKVMGFIAKIK
XP_031744493.1 mediator of RNA polymerase II transcription subunit 15a isoform X1 [Cucumis sativus]1.93e-3963.41Show/hide
Query:  MDTNNCRPTQG---GIEAGDWRPQLHPDCRSWIVEKITETLKRHHSVSGQEGLSELRKMAVRFEEKIYTQASRQLDYLKKISLKMLIIESVTQHPMGNSL
        MD NN RPTQ    G+E  DWR QL PD R  IV KI ETLKRH  VSGQEGLSELRK+AVRFEEKI+T A+ Q DYL+KISLKML +E+ TQ PMGNSL
Subjt:  MDTNNCRPTQG---GIEAGDWRPQLHPDCRSWIVEKITETLKRHHSVSGQEGLSELRKMAVRFEEKIYTQASRQLDYLKKISLKMLIIESVTQHPMGNSL

Query:  PSNRINNIEDPELEYLSEDELFT
          N  N +    +EY  EDE  T
Subjt:  PSNRINNIEDPELEYLSEDELFT
XP_031744494.1 mediator of RNA polymerase II transcription subunit 15a isoform X2 [Cucumis sativus]7.56e-4165.85Show/hide
Query:  MDTNNCRPTQG---GIEAGDWRPQLHPDCRSWIVEKITETLKRHHSVSGQEGLSELRKMAVRFEEKIYTQASRQLDYLKKISLKMLIIESVTQHPMGNSL
        MD NN RPTQ    G+E  DWR QL PD R  IV KI ETLKRH  VSGQEGLSELRK+AVRFEEKI+T A+ Q DYL+KISLKML +E+ TQ PMGNSL
Subjt:  MDTNNCRPTQG---GIEAGDWRPQLHPDCRSWIVEKITETLKRHHSVSGQEGLSELRKMAVRFEEKIYTQASRQLDYLKKISLKMLIIESVTQHPMGNSL

Query:  PSNRINNIEDPELEYLSEDELFT
            + NIE+ ELEY  EDE  T
Subjt:  PSNRINNIEDPELEYLSEDELFT
XP_031744496.1 mediator of RNA polymerase II transcription subunit 15a isoform X4 [Cucumis sativus]1.89e-3867.59Show/hide
Query:  MDTNNCRPTQG---GIEAGDWRPQLHPDCRSWIVEKITETLKRHHSVSGQEGLSELRKMAVRFEEKIYTQASRQLDYLKKISLKMLIIESVTQHPMGNSL
        MD NN RPTQ    G+E  DWR QL PD R  IV KI ETLKRH  VSGQEGLSELRK+AVRFEEKI+T A+ Q DYL+KISLKML +E+ TQ PMGNSL
Subjt:  MDTNNCRPTQG---GIEAGDWRPQLHPDCRSWIVEKITETLKRHHSVSGQEGLSELRKMAVRFEEKIYTQASRQLDYLKKISLKMLIIESVTQHPMGNSL

Query:  PSNRINNI
          N  N I
Subjt:  PSNRINNI
TrEMBL top hitse value%identityAlignment
A0A1S4E0H3 mediator of RNA polymerase II transcription subunit 15a3.9e-75100Show/hide
Query:  MDTNNCRPTQGGIEAGDWRPQLHPDCRSWIVEKITETLKRHHSVSGQEGLSELRKMAVRFEEKIYTQASRQLDYLKKISLKMLIIESVTQHPMGNSLPSN
        MDTNNCRPTQGGIEAGDWRPQLHPDCRSWIVEKITETLKRHHSVSGQEGLSELRKMAVRFEEKIYTQASRQLDYLKKISLKMLIIESVTQHPMGNSLPSN
Subjt:  MDTNNCRPTQGGIEAGDWRPQLHPDCRSWIVEKITETLKRHHSVSGQEGLSELRKMAVRFEEKIYTQASRQLDYLKKISLKMLIIESVTQHPMGNSLPSN

Query:  RINNIEDPELEYLSEDELFTKMIEEEWNWGKVMGFIAKIK
        RINNIEDPELEYLSEDELFTKMIEEEWNWGKVMGFIAKIK
Subjt:  RINNIEDPELEYLSEDELFTKMIEEEWNWGKVMGFIAKIK
A0A5D3C4Z1 Mediator of RNA polymerase II transcription subunit 15a3.5e-39100Show/hide
Query:  MAVRFEEKIYTQASRQLDYLKKISLKMLIIESVTQHPMGNSLPSNRINNIEDPELEYLSEDELFTKMIEEEWNWGKVMGFIAKIK
        MAVRFEEKIYTQASRQLDYLKKISLKMLIIESVTQHPMGNSLPSNRINNIEDPELEYLSEDELFTKMIEEEWNWGKVMGFIAKIK
Subjt:  MAVRFEEKIYTQASRQLDYLKKISLKMLIIESVTQHPMGNSLPSNRINNIEDPELEYLSEDELFTKMIEEEWNWGKVMGFIAKIK
A0A5D3C6P8 Mediator of RNA polymerase II transcription subunit 15a6.6e-3071.84Show/hide
Query:  MDTNNCRPTQG---GIEAGDWRPQLHPDCRSWIVEKITETLKRHHSVSGQEGLSELRKMAVRFEEKIYTQASRQLDYLKKISLKMLIIESVTQHPMGNSL
        MD NN RPTQG   G+EAGDWR QL PD R  IV KI ETLKRH  VSGQEGLSELRK+AVRFEEKI+T A+ Q DYL+KISLKML +E+ TQ  MGN L
Subjt:  MDTNNCRPTQG---GIEAGDWRPQLHPDCRSWIVEKITETLKRHHSVSGQEGLSELRKMAVRFEEKIYTQASRQLDYLKKISLKMLIIESVTQHPMGNSL

Query:  PSN
        PSN
Subjt:  PSN
A0A6J1HI15 mediator of RNA polymerase II transcription subunit 15a-like isoform X17.8e-3172.82Show/hide
Query:  MDTNNCRPTQG---GIEAGDWRPQLHPDCRSWIVEKITETLKRHHSVSGQEGLSELRKMAVRFEEKIYTQASRQLDYLKKISLKMLIIESVTQHPMGNSL
        MDTNN RPTQG   GIEAGDWR QL PD R  IV KI ETLKRH  VSG EGLSEL+K+AVRFEEKIYT A+ Q DYL+KISLKML +E+ +Q PMG SL
Subjt:  MDTNNCRPTQG---GIEAGDWRPQLHPDCRSWIVEKITETLKRHHSVSGQEGLSELRKMAVRFEEKIYTQASRQLDYLKKISLKMLIIESVTQHPMGNSL

Query:  PSN
        PSN
Subjt:  PSN
A0A6J1HR60 mediator of RNA polymerase II transcription subunit 15a-like isoform X13.9e-3071.84Show/hide
Query:  MDTNNCRPTQG---GIEAGDWRPQLHPDCRSWIVEKITETLKRHHSVSGQEGLSELRKMAVRFEEKIYTQASRQLDYLKKISLKMLIIESVTQHPMGNSL
        MDTNN RPTQG   GIE GDWR QL PD R  IV KI ETLKRH  VSG EGLSEL+K+AVRFEEKIYT A+ Q DYL+KISLKML +E+ +Q PMG SL
Subjt:  MDTNNCRPTQG---GIEAGDWRPQLHPDCRSWIVEKITETLKRHHSVSGQEGLSELRKMAVRFEEKIYTQASRQLDYLKKISLKMLIIESVTQHPMGNSL

Query:  PSN
        PSN
Subjt:  PSN
SwissProt top hitse value%identityAlignment
F4I171 Mediator of RNA polymerase II transcription subunit 15a2.9e-2250.93Show/hide
Query:  MDTNNCRPT----QGGIEAGDWRPQLHPDCRSWIVEKITETLKRHHSVSGQEGLSELRKMAVRFEEKIYTQASRQLDYLKKISLKMLIIESVTQHPMGNS
        MD NN RP+    +  ++ GDWR QL PD R  IV KI ETLK+H   SG EG++ELR++A RFEEKI++ A  Q DYL+KIS+KML +E+ +Q+  G+S
Subjt:  MDTNNCRPT----QGGIEAGDWRPQLHPDCRSWIVEKITETLKRHHSVSGQEGLSELRKMAVRFEEKIYTQASRQLDYLKKISLKMLIIESVTQHPMGNS

Query:  LPSNRINN
              NN
Subjt:  LPSNRINN
Arabidopsis top hitse value%identityAlignment
AT1G15780.1 unknown protein2.0e-2350.93Show/hide
Query:  MDTNNCRPT----QGGIEAGDWRPQLHPDCRSWIVEKITETLKRHHSVSGQEGLSELRKMAVRFEEKIYTQASRQLDYLKKISLKMLIIESVTQHPMGNS
        MD NN RP+    +  ++ GDWR QL PD R  IV KI ETLK+H   SG EG++ELR++A RFEEKI++ A  Q DYL+KIS+KML +E+ +Q+  G+S
Subjt:  MDTNNCRPT----QGGIEAGDWRPQLHPDCRSWIVEKITETLKRHHSVSGQEGLSELRKMAVRFEEKIYTQASRQLDYLKKISLKMLIIESVTQHPMGNS

Query:  LPSNRINN
              NN
Subjt:  LPSNRINN
AT1G15790.1 unknown protein1.1e-1348.15Show/hide
Query:  GDWRPQLHPDCRSWIVEKITETLKRHHSVSGQEGLSELRKMAVRFEEKIYTQASRQLDYLKKISLKMLIIESVTQHPMGNS
        GDWR Q     RS IV KI ET  +       EG +ELRK+AVRFEEK++  AS Q +YL++I +KML +E+ +Q+  G+S
Subjt:  GDWRPQLHPDCRSWIVEKITETLKRHHSVSGQEGLSELRKMAVRFEEKIYTQASRQLDYLKKISLKMLIIESVTQHPMGNS
AT1G15790.2 unknown protein1.1e-1348.15Show/hide
Query:  GDWRPQLHPDCRSWIVEKITETLKRHHSVSGQEGLSELRKMAVRFEEKIYTQASRQLDYLKKISLKMLIIESVTQHPMGNS
        GDWR Q     RS IV KI ET  +       EG +ELRK+AVRFEEK++  AS Q +YL++I +KML +E+ +Q+  G+S
Subjt:  GDWRPQLHPDCRSWIVEKITETLKRHHSVSGQEGLSELRKMAVRFEEKIYTQASRQLDYLKKISLKMLIIESVTQHPMGNS

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATACAAATAATTGTAGACCTACTCAAGGTGGAATTGAGGCTGGGGATTGGAGGCCTCAATTGCACCCCGATTGTCGATCGTGGATTGTCGAAAAAATCACGGAGAC
ATTGAAGAGGCACCATTCTGTTTCTGGTCAAGAGGGATTGAGTGAACTACGAAAAATGGCTGTAAGGTTTGAGGAAAAGATTTATACTCAAGCTAGCCGTCAGTTAGATT
ACCTAAAGAAAATATCTCTGAAGATGCTTATCATAGAATCAGTAACTCAGCACCCTATGGGGAATTCATTACCATCAAATCGGATCAATAATATTGAAGATCCTGAATTA
GAATATTTGAGTGAAGATGAACTATTCACAAAGATGATCGAAGAAGAATGGAATTGGGGAAAAGTTATGGGTTTTATTGCTAAAATAAAATAA
mRNA sequenceShow/hide mRNA sequence
CAATCACAAAATGTAATGGATCTGCAAAAAGCAGTTGTATCATTCTCATAGAGCTCTTCCAGAGACATCTTCAAAGAAAGTGAAGAGTAATTGCTCAACCGGAAGGTCGC
ATTTGGTCTTTGGGGAACTTTTGAGTTAAATCCCTTTCCAAACATTTGGAAGTTTCGTCTCCATGGGAAACAGTGGTTTATAAAGCTTTATAGAAGACAAAGAGCCCTCC
GCGAGTTGACAATGATTCTTGGAATGTTGAATTACTCCTCTACTCTCCAAAGGAAACTACCTTCAAATTGCTTGCTGCCTCCATCTCTGCAGTTTGCAAGATGGATGGTG
AAGATCTTCAACACACATTCTTTGAACGTCAATTTTCCAGATGTGGCTGGAACCGTTTGCTGACCACTTTTTCAATATCCAATGGGTTTCTTCGTGAGACATTCAAAGAA
AACGTTCTTCAGATTCTGTTTGGAATTTCTTCAAAGCCAAAGTTTGGGCTGTTATGGTTAAAGGCGGTCTAGGCCATCATTGCATAATCTTCCATTCTAGACGTACGGAT
CAACTTTTTCCAGAGATGGACCGAGAAAAGCAGCTAGTTTATAAGAGTTTCAACGACGCTGTTTGTTGCCGACAATTTCCTCAAAAATTTTGATGTTTTCCATAATCTAT
TTTACGAAGGAGAAATGAAAATATGGAACTTGGGAGGGGACATTTTCGATAAATTGCCCGGCGGCTGGCGTTAAAGTTGGGTAGGGAAGAAAAGTAGAAAAGTTGGTTTG
CATGTCATTGGCTGGTTGGGTATTGACGAATAGGGACTCTGTGTGTGGGCTTGTGTTCGACGCAAGGAGATTCTTCTCCATCCATATAAAACACACACAATTTCCAGATA
GTTTTCGAGCTAAATCGTCTACAAGCCTTCGATCATCATTTTCTCTCTGAAATCTCCTTGGTTTCTCCAATTTCTCTGAATTCGACTCCTTTCCTGATCCATTGCCCAAT
CGCACTCTTACCTTTTGAATGGATACAAATAATTGTAGACCTACTCAAGGTGGAATTGAGGCTGGGGATTGGAGGCCTCAATTGCACCCCGATTGTCGATCGTGGATTGT
CGAAAAAATCACGGAGACATTGAAGAGGCACCATTCTGTTTCTGGTCAAGAGGGATTGAGTGAACTACGAAAAATGGCTGTAAGGTTTGAGGAAAAGATTTATACTCAAG
CTAGCCGTCAGTTAGATTACCTAAAGAAAATATCTCTGAAGATGCTTATCATAGAATCAGTAACTCAGCACCCTATGGGGAATTCATTACCATCAAATCGGATCAATAAT
ATTGAAGATCCTGAATTAGAATATTTGAGTGAAGATGAACTATTCACAAAGATGATCGAAGAAGAATGGAATTGGGGAAAAGTTATGGGTTTTATTGCTAAAATAAAATA
ATTGTGTTTAGAACTTAGACGTTGTAATGTGCAATTTAGATGGGAACGATGGTTGGATTTAAATAGTAAAGTAATGAGCTGATTGCGAATCCATTCATTCAATTGTATGG
CTTTAAATTGGTTATAAACTATGTAGGAAGTGAAGAGATAAATTCCATCTGCACAAGCAATTTATTTGAAAACTCTAAGCTTAAATGGTTTTATTGTCGAATTATTTTCG
TTTCTTTATATTTTAACCCTTATCATTCTAAGCAATAGACTTGTTTTTCGGGGCATGTATGGGATAGTTCATGTTCGGTGCTTGGAAGTGCAAGATAATTAATATCTGAA
ATTCAATTGTACAGTTACTTTGAAACTATCTAGAAAAATTATTTATACAATTATTATGTGTAATACTTCTTTTTAACTATGT
Protein sequenceShow/hide protein sequence
MDTNNCRPTQGGIEAGDWRPQLHPDCRSWIVEKITETLKRHHSVSGQEGLSELRKMAVRFEEKIYTQASRQLDYLKKISLKMLIIESVTQHPMGNSLPSNRINNIEDPEL
EYLSEDELFTKMIEEEWNWGKVMGFIAKIK