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IVF0020660 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0020660
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionLisH domain-containing protein/CLTH domain-containing protein
Genome locationchr12:21498710..21499189
RNA-Seq ExpressionIVF0020660
SyntenyIVF0020660
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0056956.1 LisH domain-containing protein/CLTH domain-containing protein [Cucumis melo var. makuwa]2.37e-3696.97Show/hide
Query:  MDRNRTCKAQNPNPLTRRISFQLPTVEAEGSPERHLLLRFKELAIHSEQQRILIHRIPYPPKISSR
        MDRNRTCKAQNPNPLTRRISFQLPTVEAEGSPERHLLLRFKELAIHSEQQRILIHRIPYPPK+S R
Subjt:  MDRNRTCKAQNPNPLTRRISFQLPTVEAEGSPERHLLLRFKELAIHSEQQRILIHRIPYPPKISSR
KGN64643.1 hypothetical protein Csa_014215 [Cucumis sativus]8.51e-3589.39Show/hide
Query:  MDRNRTCKAQNPNPLTRRISFQLPTVEAEGSPERHLLLRFKELAIHSEQQRILIHRIPYPPKISSR
        M  NRTCKAQNP+PLT+R+SFQLPTV+AEGSPERHLLLRFKELAIHSEQQRILIHRI YPPKISSR
Subjt:  MDRNRTCKAQNPNPLTRRISFQLPTVEAEGSPERHLLLRFKELAIHSEQQRILIHRIPYPPKISSR
TrEMBL top hitse value%identityAlignment
A0A0A0LS99 Uncharacterized protein2.0e-2489.39Show/hide
Query:  MDRNRTCKAQNPNPLTRRISFQLPTVEAEGSPERHLLLRFKELAIHSEQQRILIHRIPYPPKISSR
        M  NRTCKAQNP+PLT+R+SFQLPTV+AEGSPERHLLLRFKELAIHSEQQRILIHRI YPPKISSR
Subjt:  MDRNRTCKAQNPNPLTRRISFQLPTVEAEGSPERHLLLRFKELAIHSEQQRILIHRIPYPPKISSR
A0A5A7URR5 LisH domain-containing protein/CLTH domain-containing protein6.5e-2896.97Show/hide
Query:  MDRNRTCKAQNPNPLTRRISFQLPTVEAEGSPERHLLLRFKELAIHSEQQRILIHRIPYPPKISSR
        MDRNRTCKAQNPNPLTRRISFQLPTVEAEGSPERHLLLRFKELAIHSEQQRILIHRIPYPPK+S R
Subjt:  MDRNRTCKAQNPNPLTRRISFQLPTVEAEGSPERHLLLRFKELAIHSEQQRILIHRIPYPPKISSR
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGACCGGAATAGGACCTGTAAAGCCCAAAACCCGAATCCATTAACTAGAAGAATTTCATTTCAACTCCCGACTGTCGAAGCTGAGGGATCGCCGGAACGCCATTTATT
ACTTCGATTCAAAGAATTGGCAATCCACTCCGAGCAGCAAAGAATCTTGATTCATAGGATACCTTATCCTCCGAAGATTTCTTCTAGGTGA
mRNA sequenceShow/hide mRNA sequence
ATGGACCGGAATAGGACCTGTAAAGCCCAAAACCCGAATCCATTAACTAGAAGAATTTCATTTCAACTCCCGACTGTCGAAGCTGAGGGATCGCCGGAACGCCATTTATT
ACTTCGATTCAAAGAATTGGCAATCCACTCCGAGCAGCAAAGAATCTTGATTCATAGGATACCTTATCCTCCGAAGATTTCTTCTAGGTGA
Protein sequenceShow/hide protein sequence
MDRNRTCKAQNPNPLTRRISFQLPTVEAEGSPERHLLLRFKELAIHSEQQRILIHRIPYPPKISSR