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IVF0020670 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0020670
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionGag/pol protein
Genome locationchr04:21888075..21888491
RNA-Seq ExpressionIVF0020670
SyntenyIVF0020670
Gene Ontology termsGO:0006807 - nitrogen compound metabolic process (biological process)
GO:0043170 - macromolecule metabolic process (biological process)
GO:0044238 - primary metabolic process (biological process)
GO:0016020 - membrane (cellular component)
GO:0016787 - hydrolase activity (molecular function)
GO:0046872 - metal ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0061317.1 hypothetical protein E6C27_scaffold6213G00130 [Cucumis melo var. makuwa]1.50e-2860.82Show/hide
Query:  IICLLMFGAPNPTNSTHTPDMLSHTLSYGIGREASSLEEELWCDPKRSKSWLMLQTSGGRSSDVRNHWKCTCNERNKLMSRTSGVRPRKTQARIPHT
        +I L +F A     STHT  ML H  + GIGREASSLE ELW DPKR K W ML TSG R S VRNHWKCTC+  N+L SRTSGV P KT+ R+  T
Subjt:  IICLLMFGAPNPTNSTHTPDMLSHTLSYGIGREASSLEEELWCDPKRSKSWLMLQTSGGRSSDVRNHWKCTCNERNKLMSRTSGVRPRKTQARIPHT

KAA0062888.1 non-LTR retroelement reverse transcriptase-like protein [Cucumis melo var. makuwa]2.45e-3758.7Show/hide
Query:  LSSRTFGNLPKKTGARKPQIQFSHAGVKSGHPTVSSL-LLRIICLLMFGAPNPTNSTHTPDMLSHTLSYGIGREASSLEEELWCDPKRSKSWLMLQTSGG
        L+SRT G  PKKT AR P+ QFS +G KS  PTVSSL  + +I L +F A  P  STHT  ML    S GIG+EASSLE ELWC+PKRSK W ML TS  
Subjt:  LSSRTFGNLPKKTGARKPQIQFSHAGVKSGHPTVSSL-LLRIICLLMFGAPNPTNSTHTPDMLSHTLSYGIGREASSLEEELWCDPKRSKSWLMLQTSGG

Query:  RSSDVRNHWKCTCNERNKLMSRTSGVRPRKTQARIPHT
        RSS +RNH KCT  E N L SRT    P+KT+AR+P T
Subjt:  RSSDVRNHWKCTCNERNKLMSRTSGVRPRKTQARIPHT

KAA0066117.1 mitochondrial intermembrane space import and assembly protein 40 [Cucumis melo var. makuwa]2.05e-2863.54Show/hide
Query:  ICLLMFGAPNPTNSTHTPDMLSHTLSYGIGREASSLEEELWCDPKRSKSWLMLQTSGGRSSDVRNHWKCTCNERNKLMSRTSGVRPRKTQARIPHT
        +CL M  AP          ML  T S GIGREASSLE ELWCDPKRSK W  L TSG RSS VRNHWKCTC+E N L SRTSG RP+KT A +P T
Subjt:  ICLLMFGAPNPTNSTHTPDMLSHTLSYGIGREASSLEEELWCDPKRSKSWLMLQTSGGRSSDVRNHWKCTCNERNKLMSRTSGVRPRKTQARIPHT

TYK22521.1 uncharacterized protein E5676_scaffold387G00220 [Cucumis melo var. makuwa]1.20e-3346.49Show/hide
Query:  LSSRTFGNLPKKTGARKPQIQFSHAGVKSGHPTVSSLLLRII-CLLMFGAPNPTNSTHTPDMLSHTLSY-------------------------------
        LSSRT G  PKKT AR PQ QFS  G KS  PTVS+L   ++  L +FGAP P  STHTP ML  T S                                
Subjt:  LSSRTFGNLPKKTGARKPQIQFSHAGVKSGHPTVSSLLLRII-CLLMFGAPNPTNSTHTPDMLSHTLSY-------------------------------

Query:  -----------------------GIGREASSLEEELWCDPKRSKSWLMLQTSGGRSSDVRNHWKCTCNERNKLMSRTSGVRPRKT
                               GIGREASSLE EL CDPK SK W ML T G RSS  RNHWKCTC+E N L SRTSG RP KT
Subjt:  -----------------------GIGREASSLEEELWCDPKRSKSWLMLQTSGGRSSDVRNHWKCTCNERNKLMSRTSGVRPRKT

TYK23424.1 gag/pol protein [Cucumis melo var. makuwa]4.17e-90100Show/hide
Query:  MLSSRTFGNLPKKTGARKPQIQFSHAGVKSGHPTVSSLLLRIICLLMFGAPNPTNSTHTPDMLSHTLSYGIGREASSLEEELWCDPKRSKSWLMLQTSGG
        MLSSRTFGNLPKKTGARKPQIQFSHAGVKSGHPTVSSLLLRIICLLMFGAPNPTNSTHTPDMLSHTLSYGIGREASSLEEELWCDPKRSKSWLMLQTSGG
Subjt:  MLSSRTFGNLPKKTGARKPQIQFSHAGVKSGHPTVSSLLLRIICLLMFGAPNPTNSTHTPDMLSHTLSYGIGREASSLEEELWCDPKRSKSWLMLQTSGG

Query:  RSSDVRNHWKCTCNERNKLMSRTSGVRPRKTQARIPHT
        RSSDVRNHWKCTCNERNKLMSRTSGVRPRKTQARIPHT
Subjt:  RSSDVRNHWKCTCNERNKLMSRTSGVRPRKTQARIPHT

TrEMBL top hitse value%identityAlignment
A0A5A7V368 Uncharacterized protein1.3e-2260.82Show/hide
Query:  IICLLMFGAPNPTNSTHTPDMLSHTLSYGIGREASSLEEELWCDPKRSKSWLMLQTSGGRSSDVRNHWKCTCNERNKLMSRTSGVRPRKTQARIPHT
        +I L +F A     STHT  ML H  + GIGREASSLE ELW DPKR K W ML TSG R S VRNHWKCTC+  N+L SRTSGV P KT+ R+  T
Subjt:  IICLLMFGAPNPTNSTHTPDMLSHTLSYGIGREASSLEEELWCDPKRSKSWLMLQTSGGRSSDVRNHWKCTCNERNKLMSRTSGVRPRKTQARIPHT

A0A5A7V5J2 Non-LTR retroelement reverse transcriptase-like protein5.3e-3258.7Show/hide
Query:  LSSRTFGNLPKKTGARKPQIQFSHAGVKSGHPTVSSL-LLRIICLLMFGAPNPTNSTHTPDMLSHTLSYGIGREASSLEEELWCDPKRSKSWLMLQTSGG
        L+SRT G  PKKT AR P+ QFS +G KS  PTVSSL  + +I L +F A  P  STHT  ML    S GIG+EASSLE ELWC+PKRSK W ML TS  
Subjt:  LSSRTFGNLPKKTGARKPQIQFSHAGVKSGHPTVSSL-LLRIICLLMFGAPNPTNSTHTPDMLSHTLSYGIGREASSLEEELWCDPKRSKSWLMLQTSGG

Query:  RSSDVRNHWKCTCNERNKLMSRTSGVRPRKTQARIPHT
        RSS +RNH KCT  E N L SRT    P+KT+AR+P T
Subjt:  RSSDVRNHWKCTCNERNKLMSRTSGVRPRKTQARIPHT

A0A5A7VGB1 Mitochondrial intermembrane space import and assembly protein 405.9e-2372.15Show/hide
Query:  PDMLSHTLSYGIGREASSLEEELWCDPKRSKSWLMLQTSGGRSSDVRNHWKCTCNERNKLMSRTSGVRPRKTQARIPHT
        P ML  T S GIGREASSLE ELWCDPKRSK W  L TSG RSS VRNHWKCTC+E N L SRTSG RP+KT A +P T
Subjt:  PDMLSHTLSYGIGREASSLEEELWCDPKRSKSWLMLQTSGGRSSDVRNHWKCTCNERNKLMSRTSGVRPRKTQARIPHT

A0A5D3DFP2 Uncharacterized protein1.2e-2846.49Show/hide
Query:  LSSRTFGNLPKKTGARKPQIQFSHAGVKSGHPTVSSLLLRII-CLLMFGAPNPTNSTHTPDMLSHTLSY-------------------------------
        LSSRT G  PKKT AR PQ QFS  G KS  PTVS+L   ++  L +FGAP P  STHTP ML  T S                                
Subjt:  LSSRTFGNLPKKTGARKPQIQFSHAGVKSGHPTVSSLLLRII-CLLMFGAPNPTNSTHTPDMLSHTLSY-------------------------------

Query:  -----------------------GIGREASSLEEELWCDPKRSKSWLMLQTSGGRSSDVRNHWKCTCNERNKLMSRTSGVRPRKT
                               GIGREASSLE EL CDPK SK W ML T G RSS  RNHWKCTC+E N L SRTSG RP KT
Subjt:  -----------------------GIGREASSLEEELWCDPKRSKSWLMLQTSGGRSSDVRNHWKCTCNERNKLMSRTSGVRPRKT

A0A5D3DIF8 Gag/pol protein1.1e-74100Show/hide
Query:  MLSSRTFGNLPKKTGARKPQIQFSHAGVKSGHPTVSSLLLRIICLLMFGAPNPTNSTHTPDMLSHTLSYGIGREASSLEEELWCDPKRSKSWLMLQTSGG
        MLSSRTFGNLPKKTGARKPQIQFSHAGVKSGHPTVSSLLLRIICLLMFGAPNPTNSTHTPDMLSHTLSYGIGREASSLEEELWCDPKRSKSWLMLQTSGG
Subjt:  MLSSRTFGNLPKKTGARKPQIQFSHAGVKSGHPTVSSLLLRIICLLMFGAPNPTNSTHTPDMLSHTLSYGIGREASSLEEELWCDPKRSKSWLMLQTSGG

Query:  RSSDVRNHWKCTCNERNKLMSRTSGVRPRKTQARIPHT
        RSSDVRNHWKCTCNERNKLMSRTSGVRPRKTQARIPHT
Subjt:  RSSDVRNHWKCTCNERNKLMSRTSGVRPRKTQARIPHT

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCTGAGCTCAAGGACTTTCGGTAATCTTCCCAAGAAAACGGGCGCGAGAAAGCCCCAGATTCAGTTTTCTCATGCTGGGGTAAAAAGCGGTCACCCAACGGTTTCTTC
CCTTTTGCTTCGTATTATTTGTCTTTTGATGTTCGGGGCTCCTAACCCGACGAATTCAACGCACACTCCTGACATGCTCTCTCACACGTTGTCCTATGGTATAGGTCGTG
AAGCCAGCTCGTTGGAGGAAGAACTATGGTGCGACCCTAAACGATCCAAAAGTTGGCTAATGCTTCAAACGAGTGGCGGACGCTCGTCCGATGTCAGAAACCACTGGAAA
TGCACTTGTAACGAAAGAAACAAGCTGATGTCGAGGACTTCTGGTGTTCGTCCCAGGAAAACGCAAGCGAGAATACCCCACACTTAG
mRNA sequenceShow/hide mRNA sequence
ATGCTGAGCTCAAGGACTTTCGGTAATCTTCCCAAGAAAACGGGCGCGAGAAAGCCCCAGATTCAGTTTTCTCATGCTGGGGTAAAAAGCGGTCACCCAACGGTTTCTTC
CCTTTTGCTTCGTATTATTTGTCTTTTGATGTTCGGGGCTCCTAACCCGACGAATTCAACGCACACTCCTGACATGCTCTCTCACACGTTGTCCTATGGTATAGGTCGTG
AAGCCAGCTCGTTGGAGGAAGAACTATGGTGCGACCCTAAACGATCCAAAAGTTGGCTAATGCTTCAAACGAGTGGCGGACGCTCGTCCGATGTCAGAAACCACTGGAAA
TGCACTTGTAACGAAAGAAACAAGCTGATGTCGAGGACTTCTGGTGTTCGTCCCAGGAAAACGCAAGCGAGAATACCCCACACTTAG
Protein sequenceShow/hide protein sequence
MLSSRTFGNLPKKTGARKPQIQFSHAGVKSGHPTVSSLLLRIICLLMFGAPNPTNSTHTPDMLSHTLSYGIGREASSLEEELWCDPKRSKSWLMLQTSGGRSSDVRNHWK
CTCNERNKLMSRTSGVRPRKTQARIPHT