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IVF0020678 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0020678
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionRetrotrans_gag domain-containing protein
Genome locationchr10:15369689..15370120
RNA-Seq ExpressionIVF0020678
SyntenyIVF0020678
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0035974.1 hypothetical protein E6C27_scaffold56G001830 [Cucumis melo var. makuwa]4.90e-94100Show/hide
Query:  MALIDSETKRCRRFVDGLRGKIRTPVVPTVVRNDYAQLVDATLRVEKSMGVKSASSGISGEEEKGSIENKKIKTIVSQESCWSSDKKQRCSECGKRHSGT
        MALIDSETKRCRRFVDGLRGKIRTPVVPTVVRNDYAQLVDATLRVEKSMGVKSASSGISGEEEKGSIENKKIKTIVSQESCWSSDKKQRCSECGKRHSGT
Subjt:  MALIDSETKRCRRFVDGLRGKIRTPVVPTVVRNDYAQLVDATLRVEKSMGVKSASSGISGEEEKGSIENKKIKTIVSQESCWSSDKKQRCSECGKRHSGT

Query:  CRRRSITCFQCHKKKHYKSEFQSKFKEDEERSTQIGVASHSVQ
        CRRRSITCFQCHKKKHYKSEFQSKFKEDEERSTQIGVASHSVQ
Subjt:  CRRRSITCFQCHKKKHYKSEFQSKFKEDEERSTQIGVASHSVQ

KAA0056429.1 hypothetical protein E6C27_scaffold186G001860 [Cucumis melo var. makuwa]4.91e-2353.47Show/hide
Query:  NDYAQLVD-ATLRVEKSMGVKSASSGISGEEEKGSIEN-KKIKTIVSQESCWSSDKKQRCSECGKRHSGTCRRRSITCFQCHKKKHYKSEFQSKFKEDEE
        +D+ ++ + A L+VEKS+ +K  SS +S EEE+ +I N KK KT++SQ S W  D+KQ+C++ G+RH+  CRR+SITC Q  +K HYKSE+QSKF EDEE
Subjt:  NDYAQLVD-ATLRVEKSMGVKSASSGISGEEEKGSIEN-KKIKTIVSQESCWSSDKKQRCSECGKRHSGTCRRRSITCFQCHKKKHYKSEFQSKFKEDEE

Query:  R
        R
Subjt:  R

KAA0062421.1 hypothetical protein E6C27_scaffold154G002300 [Cucumis melo var. makuwa]6.25e-3763.3Show/hide
Query:  MALIDSETKRCRRFVDGLRGKIRTPVVPTVVRNDYAQLVDATLRVEKSMGVKSASSGISGEEEKGSIENKKIKTIVSQESCWSSDKKQRCSECGKRHSGT
        M LID E +RCR+FV GLRGKIRT VVP V+R+DYA LVD  L VEKS+G+K  S  +S EEE GS+E KK KTIVSQ S W+SD+K +C +CG+ H G 
Subjt:  MALIDSETKRCRRFVDGLRGKIRTPVVPTVVRNDYAQLVDATLRVEKSMGVKSASSGISGEEEKGSIENKKIKTIVSQESCWSSDKKQRCSECGKRHSGT

Query:  CRRRSITCF
        CRRRSI C+
Subjt:  CRRRSITCF

KAE8649688.1 hypothetical protein Csa_012948, partial [Cucumis sativus]2.72e-1252.11Show/hide
Query:  MALIDSETKRCRRFVDGLRGKIRTPVVPTVVRNDYAQLVDATLRVEKSMGVKSASSGISGEEEKGSIENKK
        + LI  E +RCR  ++ LR +IRT +V  ++R+DYAQLVDA LRVEKS+G+K +SS    + E+GS +NKK
Subjt:  MALIDSETKRCRRFVDGLRGKIRTPVVPTVVRNDYAQLVDATLRVEKSMGVKSASSGISGEEEKGSIENKK

TYK18871.1 hypothetical protein E5676_scaffold204G00730 [Cucumis melo var. makuwa]7.03e-1666.13Show/hide
Query:  MALIDSETKRCRRFVDGLRGKIRTPVVPTVVRNDYAQLVDATLRVEKSMGVKSASSGISGEE
        M LI SETKRCR F++GLRG+IRTPVVP  VR+ Y QLV A LRVEKS+GV+  SS +  EE
Subjt:  MALIDSETKRCRRFVDGLRGKIRTPVVPTVVRNDYAQLVDATLRVEKSMGVKSASSGISGEE

TrEMBL top hitse value%identityAlignment
A0A5D3D5N9 Uncharacterized protein8.3e-1266.13Show/hide
Query:  MALIDSETKRCRRFVDGLRGKIRTPVVPTVVRNDYAQLVDATLRVEKSMGVKSASSGISGEE
        M LI SETKRCR F++GLRG+IRTPVVP  VR+ Y QLV A LRVEKS+GV+  SS +  EE
Subjt:  MALIDSETKRCRRFVDGLRGKIRTPVVPTVVRNDYAQLVDATLRVEKSMGVKSASSGISGEE

A0A5D3DS44 Uncharacterized protein3.7e-2863.3Show/hide
Query:  MALIDSETKRCRRFVDGLRGKIRTPVVPTVVRNDYAQLVDATLRVEKSMGVKSASSGISGEEEKGSIENKKIKTIVSQESCWSSDKKQRCSECGKRHSGT
        M LID E +RCR+FV GLRGKIRT VVP V+R+DYA LVD  L VEKS+G+K  S  +S EEE GS+E KK KTIVSQ S W+SD+K +C +CG+ H G 
Subjt:  MALIDSETKRCRRFVDGLRGKIRTPVVPTVVRNDYAQLVDATLRVEKSMGVKSASSGISGEEEKGSIENKKIKTIVSQESCWSSDKKQRCSECGKRHSGT

Query:  CRRRSITCF
        CRRRSI C+
Subjt:  CRRRSITCF

A0A5D3DSB4 DNA/RNA polymerases superfamily protein6.5e-0932.06Show/hide
Query:  LIDSETKRCRRFVDGLRGKIRTPVVPTVVRNDYAQLVDATLRVEKSMGVK----------SASSGISGEEEK---GSIENKKIKTIVSQESCWSSDKKQR
        ++ SE+ RCRRF  GL  +IRTPV       +++QLV+  LRVE+++  +          S +SG  G E +     I    +++   Q+S  S+ ++ R
Subjt:  LIDSETKRCRRFVDGLRGKIRTPVVPTVVRNDYAQLVDATLRVEKSMGVK----------SASSGISGEEEK---GSIENKKIKTIVSQESCWSSDKKQR

Query:  CSECGKRHSGTCRRRSITCFQCHKKKHYKSE
        C+ CG+ H G C   +  C+QC + +H+K +
Subjt:  CSECGKRHSGTCRRRSITCFQCHKKKHYKSE

A0A5D3DZA3 Uncharacterized protein1.7e-1756.99Show/hide
Query:  DATLRVEKSMGVKSASSGISGEEEKGSIEN-KKIKTIVSQESCWSSDKKQRCSECGKRHSGTCRRRSITCFQCHKKKHYKSEFQSKFKEDEER
        +A L+VEKS+ +K  SS +S EEE+ +I N KK KT++SQ S W  D+KQ+C++ G+RH+  CRR+SITC Q  +K HYKSE+QSKF EDEER
Subjt:  DATLRVEKSMGVKSASSGISGEEEKGSIEN-KKIKTIVSQESCWSSDKKQRCSECGKRHSGTCRRRSITCFQCHKKKHYKSEFQSKFKEDEER

A0A5D3E3Q3 Retrotrans_gag domain-containing protein2.4e-72100Show/hide
Query:  MALIDSETKRCRRFVDGLRGKIRTPVVPTVVRNDYAQLVDATLRVEKSMGVKSASSGISGEEEKGSIENKKIKTIVSQESCWSSDKKQRCSECGKRHSGT
        MALIDSETKRCRRFVDGLRGKIRTPVVPTVVRNDYAQLVDATLRVEKSMGVKSASSGISGEEEKGSIENKKIKTIVSQESCWSSDKKQRCSECGKRHSGT
Subjt:  MALIDSETKRCRRFVDGLRGKIRTPVVPTVVRNDYAQLVDATLRVEKSMGVKSASSGISGEEEKGSIENKKIKTIVSQESCWSSDKKQRCSECGKRHSGT

Query:  CRRRSITCFQCHKKKHYKSEFQSKFKEDEERSTQIGVASHSVQ
        CRRRSITCFQCHKKKHYKSEFQSKFKEDEERSTQIGVASHSVQ
Subjt:  CRRRSITCFQCHKKKHYKSEFQSKFKEDEERSTQIGVASHSVQ

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCACTAATCGACTCAGAGACTAAACGATGTAGGCGATTTGTGGACGGATTAAGAGGCAAAATCAGAACTCCAGTTGTACCCACTGTAGTAAGAAATGACTATGCGCA
ATTAGTAGATGCAACCCTACGAGTAGAAAAGAGTATGGGTGTAAAAAGCGCAAGTTCTGGAATAAGCGGAGAAGAAGAAAAAGGAAGTATAGAGAATAAGAAGATTAAGA
CTATAGTCAGCCAAGAGTCGTGTTGGAGTAGCGATAAAAAACAAAGGTGTAGTGAGTGTGGCAAGAGGCATTCAGGAACTTGTAGGAGAAGGAGTATCACATGTTTCCAA
TGTCACAAGAAAAAGCATTATAAGAGTGAATTCCAAAGTAAGTTTAAAGAAGACGAAGAAAGATCAACTCAAATAGGGGTGGCATCTCACTCAGTTCAATAG
mRNA sequenceShow/hide mRNA sequence
ATGGCACTAATCGACTCAGAGACTAAACGATGTAGGCGATTTGTGGACGGATTAAGAGGCAAAATCAGAACTCCAGTTGTACCCACTGTAGTAAGAAATGACTATGCGCA
ATTAGTAGATGCAACCCTACGAGTAGAAAAGAGTATGGGTGTAAAAAGCGCAAGTTCTGGAATAAGCGGAGAAGAAGAAAAAGGAAGTATAGAGAATAAGAAGATTAAGA
CTATAGTCAGCCAAGAGTCGTGTTGGAGTAGCGATAAAAAACAAAGGTGTAGTGAGTGTGGCAAGAGGCATTCAGGAACTTGTAGGAGAAGGAGTATCACATGTTTCCAA
TGTCACAAGAAAAAGCATTATAAGAGTGAATTCCAAAGTAAGTTTAAAGAAGACGAAGAAAGATCAACTCAAATAGGGGTGGCATCTCACTCAGTTCAATAG
Protein sequenceShow/hide protein sequence
MALIDSETKRCRRFVDGLRGKIRTPVVPTVVRNDYAQLVDATLRVEKSMGVKSASSGISGEEEKGSIENKKIKTIVSQESCWSSDKKQRCSECGKRHSGTCRRRSITCFQ
CHKKKHYKSEFQSKFKEDEERSTQIGVASHSVQ