CuGenDBv2

Gene ID	IVF0020720
Organism	Cucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	protein LOW PSII ACCUMULATION 1, chloroplastic
Genome location	chr07:24119713..24124616
RNA-Seq Expression	IVF0020720
Synteny	IVF0020720
Gene Ontology terms	GO:0010270 - photosystem II oxygen evolving complex assembly (biological process) GO:0016021 - integral component of membrane (cellular component) GO:0005515 - protein binding (molecular function)
InterPro domains	IPR011990 - Tetratricopeptide-like helical domain superfamily IPR019734 - Tetratricopeptide repeat IPR021883 - Protein LOW PSII ACCUMULATION 1-like

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

XP_004152258.2 protein LOW PSII ACCUMULATION 1, chloroplastic [Cucumis sativus]

2.14e-300

97.47

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Query:  MAMATLPLFHHLPTLSNPKSPTILRPRLPTSQRTFHLSILSCSSTSQSPEANLQSAESCVNLGLQLFSKGRVKEALVQFEAALNMDPNPMEAQAAFYNKA
        MAMATLPLFHHLPTLSNPKS TILRPRLPTSQRTF LSILSCSSTSQSPEANLQSAESCVN GLQLFSKGRVKEALVQFEAALNMDPNPMEAQAA YNKA
Subjt:  MAMATLPLFHHLPTLSNPKSPTILRPRLPTSQRTFHLSILSCSSTSQSPEANLQSAESCVNLGLQLFSKGRVKEALVQFEAALNMDPNPMEAQAAFYNKA

Query:  CCHAYRGEGKKAADCLRVALREYNLKFGTILNDPDLASFRALPEFKELQEEARMGGEDIGYGFRRDLKLISEVQAPFRGVRRFFYVALSAAAGISLLFNI
        CCHAYRGEGKKAADCLRVALREYNLKFGTILNDPDLASFRALPEFKELQEEARMGGEDIGYGFRRDLKLISEVQAPFRGVR+FFYVALSAAAGISLLFNI
Subjt:  CCHAYRGEGKKAADCLRVALREYNLKFGTILNDPDLASFRALPEFKELQEEARMGGEDIGYGFRRDLKLISEVQAPFRGVRRFFYVALSAAAGISLLFNI

Query:  PRLFRAIQGGDGAPDVWETAGNLAVNVGGIIVFVALFLWDNKKEEEQLAQISRNETLSRLPLRLSTNRIVELVQLRDTVRPVILAGKKETVSSAIQKAER
        PRLFRAIQGGDGAPDVWETAGNLAVNVGGIIVFVALFLWDNKKEEEQLAQISRNETLSRLPLRLSTNRIVELVQLRDTVRPVILAGKKETVSSAIQKAER
Subjt:  PRLFRAIQGGDGAPDVWETAGNLAVNVGGIIVFVALFLWDNKKEEEQLAQISRNETLSRLPLRLSTNRIVELVQLRDTVRPVILAGKKETVSSAIQKAER

Query:  FRTELLRRGVLLVPVIWGEGREPQIEKKGFGAPA-AAATALPSIGEDFEKRAQSITAKSKLKAEIRFRAEVISPAEWESWIRDQQKSEGVTPGEDVYIIL
        FRTELLRRGVLLVPVIWGEGREPQIEKKGFGAP  AAA ALPSIGEDFEKRAQSITAKSKLKAEIRFRAEVISPAEWESWIR+QQ+SEGVTPGEDVYIIL
Subjt:  FRTELLRRGVLLVPVIWGEGREPQIEKKGFGAPA-AAATALPSIGEDFEKRAQSITAKSKLKAEIRFRAEVISPAEWESWIRDQQKSEGVTPGEDVYIIL

Query:  RLDGRIRRSGRGMPDWQKIIEELPPMEALLSKLEK
        RLDGR+RRSGRGMPDWQKIIEELPPMEALLSKLEK
Subjt:  RLDGRIRRSGRGMPDWQKIIEELPPMEALLSKLEK

XP_008454363.1 PREDICTED: protein LOW PSII ACCUMULATION 1, chloroplastic isoform X1 [Cucumis melo]

7.32e-310

100

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Query:  MAMATLPLFHHLPTLSNPKSPTILRPRLPTSQRTFHLSILSCSSTSQSPEANLQSAESCVNLGLQLFSKGRVKEALVQFEAALNMDPNPMEAQAAFYNKA
        MAMATLPLFHHLPTLSNPKSPTILRPRLPTSQRTFHLSILSCSSTSQSPEANLQSAESCVNLGLQLFSKGRVKEALVQFEAALNMDPNPMEAQAAFYNKA
Subjt:  MAMATLPLFHHLPTLSNPKSPTILRPRLPTSQRTFHLSILSCSSTSQSPEANLQSAESCVNLGLQLFSKGRVKEALVQFEAALNMDPNPMEAQAAFYNKA

Query:  CCHAYRGEGKKAADCLRVALREYNLKFGTILNDPDLASFRALPEFKELQEEARMGGEDIGYGFRRDLKLISEVQAPFRGVRRFFYVALSAAAGISLLFNI
        CCHAYRGEGKKAADCLRVALREYNLKFGTILNDPDLASFRALPEFKELQEEARMGGEDIGYGFRRDLKLISEVQAPFRGVRRFFYVALSAAAGISLLFNI
Subjt:  CCHAYRGEGKKAADCLRVALREYNLKFGTILNDPDLASFRALPEFKELQEEARMGGEDIGYGFRRDLKLISEVQAPFRGVRRFFYVALSAAAGISLLFNI

Query:  PRLFRAIQGGDGAPDVWETAGNLAVNVGGIIVFVALFLWDNKKEEEQLAQISRNETLSRLPLRLSTNRIVELVQLRDTVRPVILAGKKETVSSAIQKAER
        PRLFRAIQGGDGAPDVWETAGNLAVNVGGIIVFVALFLWDNKKEEEQLAQISRNETLSRLPLRLSTNRIVELVQLRDTVRPVILAGKKETVSSAIQKAER
Subjt:  PRLFRAIQGGDGAPDVWETAGNLAVNVGGIIVFVALFLWDNKKEEEQLAQISRNETLSRLPLRLSTNRIVELVQLRDTVRPVILAGKKETVSSAIQKAER

Query:  FRTELLRRGVLLVPVIWGEGREPQIEKKGFGAPAAAATALPSIGEDFEKRAQSITAKSKLKAEIRFRAEVISPAEWESWIRDQQKSEGVTPGEDVYIILR
        FRTELLRRGVLLVPVIWGEGREPQIEKKGFGAPAAAATALPSIGEDFEKRAQSITAKSKLKAEIRFRAEVISPAEWESWIRDQQKSEGVTPGEDVYIILR
Subjt:  FRTELLRRGVLLVPVIWGEGREPQIEKKGFGAPAAAATALPSIGEDFEKRAQSITAKSKLKAEIRFRAEVISPAEWESWIRDQQKSEGVTPGEDVYIILR

Query:  LDGRIRRSGRGMPDWQKIIEELPPMEALLSKLEK
        LDGRIRRSGRGMPDWQKIIEELPPMEALLSKLEK
Subjt:  LDGRIRRSGRGMPDWQKIIEELPPMEALLSKLEK

XP_022143429.1 protein LOW PSII ACCUMULATION 1, chloroplastic isoform X1 [Momordica charantia]

1.19e-284

91.1

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Query:  MAMATLPLFHHLPTLSNPKSPTILRPRLPTS----QRTFHLSILSCSSTSQSPEANLQSAESCVNLGLQLFSKGRVKEALVQFEAALNMDPNPMEAQAAF
        MA+ATLPL+HHL   SNPKS T LRPRLPTS     + FHLSI  CSSTSQSPEAN+++AESCVNLGLQLFSKGRVKEALVQF+AALN+DPNP+EAQAAF
Subjt:  MAMATLPLFHHLPTLSNPKSPTILRPRLPTS----QRTFHLSILSCSSTSQSPEANLQSAESCVNLGLQLFSKGRVKEALVQFEAALNMDPNPMEAQAAF

Query:  YNKACCHAYRGEGKKAADCLRVALREYNLKFGTILNDPDLASFRALPEFKELQEEARMGGEDIGYGFRRDLKLISEVQAPFRGVRRFFYVALSAAAGISL
        YNKACCHAYRGEGKKAADCLRVALREYNLKFGTILNDPDLASFRALPEFKELQEEAR+GGEDIGYGFRRDLKLISEVQAPFRGVR+FFYVALSAAAGISL
Subjt:  YNKACCHAYRGEGKKAADCLRVALREYNLKFGTILNDPDLASFRALPEFKELQEEARMGGEDIGYGFRRDLKLISEVQAPFRGVRRFFYVALSAAAGISL

Query:  LFNIPRLFRAIQGGDGAPDVWETAGNLAVNVGGIIVFVALFLWDNKKEEEQLAQISRNETLSRLPLRLSTNRIVELVQLRDTVRPVILAGKKETVSSAIQ
        LF IPRLFRAIQGGD APDVWETAGNLAVN+GGIIV VALFLWDNKKEEEQLAQISRNETLSRLPLRLSTNRIVELVQLRDTVRPVILAGKKETVSSAIQ
Subjt:  LFNIPRLFRAIQGGDGAPDVWETAGNLAVNVGGIIVFVALFLWDNKKEEEQLAQISRNETLSRLPLRLSTNRIVELVQLRDTVRPVILAGKKETVSSAIQ

Query:  KAERFRTELLRRGVLLVPVIWGEGREPQIEKKGFGAPAAAATALPSIGEDFEKRAQSITAKSKLKAEIRFRAEVISPAEWESWIRDQQKSEGVTPGEDVY
        KAERFRTELLRRGVLLVPV+WGEGREPQIEK+GFGAP  A   LPSIGEDFEKRAQSITAKSKLKAEIRFRAEV+SPAEWESWIRDQQKSEGVTPGEDVY
Subjt:  KAERFRTELLRRGVLLVPVIWGEGREPQIEKKGFGAPAAAATALPSIGEDFEKRAQSITAKSKLKAEIRFRAEVISPAEWESWIRDQQKSEGVTPGEDVY

Query:  IILRLDGRIRRSGRGMPDWQKIIEELPPMEALLSKLEK
        IILRLDGR+RRSGRGMPDW KIIEELPPMEALLSKLE+
Subjt:  IILRLDGRIRRSGRGMPDWQKIIEELPPMEALLSKLEK

XP_022983449.1 protein LOW PSII ACCUMULATION 1, chloroplastic [Cucurbita maxima]

5.84e-283

91.76

Show/hide

Query:  MAMATLPLFHHLPTLSNPKSPTILRPRLPTS--QRTFHLSILSCSSTSQSPEANLQSAESCVNLGLQLFSKGRVKEALVQFEAALNMDPNPMEAQAAFYN
        + MATLP+FH L TLSNPKS TILR RLPTS  QR FH+SIL CSSTSQSPE N++SAES VNLGLQLFSKGRVKEALVQFEAAL+M+PNPMEAQAA YN
Subjt:  MAMATLPLFHHLPTLSNPKSPTILRPRLPTS--QRTFHLSILSCSSTSQSPEANLQSAESCVNLGLQLFSKGRVKEALVQFEAALNMDPNPMEAQAAFYN

Query:  KACCHAYRGEGKKAADCLRVALREYNLKFGTILNDPDLASFRALPEFKELQEEARMGGEDIGYGFRRDLKLISEVQAPFRGVRRFFYVALSAAAGISLLF
        KACCHAYRGEGKKAADCLRVALREYNLKFGTILNDPDLASFRALPEFKELQEEARMGGEDIGYGFRRDLKLISEVQAPFRGVRRFFYVALSAAAGISLLF
Subjt:  KACCHAYRGEGKKAADCLRVALREYNLKFGTILNDPDLASFRALPEFKELQEEARMGGEDIGYGFRRDLKLISEVQAPFRGVRRFFYVALSAAAGISLLF

Query:  NIPRLFRAIQGGDGAPDVWETAGNLAVNVGGIIVFVALFLWDNKKEEEQLAQISRNETLSRLPLRLSTNRIVELVQLRDTVRPVILAGKKETVSSAIQKA
        N+PRLFRAIQGG+ APDVWET GNLAVNVGGI+VFVALFLWDNKKEEEQLAQISRNETLSRLPLRLSTNR+VELVQLRDTVRPVILAGKKETVSSAIQKA
Subjt:  NIPRLFRAIQGGDGAPDVWETAGNLAVNVGGIIVFVALFLWDNKKEEEQLAQISRNETLSRLPLRLSTNRIVELVQLRDTVRPVILAGKKETVSSAIQKA

Query:  ERFRTELLRRGVLLVPVIWGEGREPQIEKKGFGAPA-AAATALPSIGEDFEKRAQSITAKSKLKAEIRFRAEVISPAEWESWIRDQQKSEGVTPGEDVYI
        ERFRTELLRRGVLLVPVIW EGREP++EKKGFGAPA A + ALPSIGEDFEKRAQSITAKSKLKAEIRFRA+VISPAEWESWIRDQQKSEGVTPGEDVYI
Subjt:  ERFRTELLRRGVLLVPVIWGEGREPQIEKKGFGAPA-AAATALPSIGEDFEKRAQSITAKSKLKAEIRFRAEVISPAEWESWIRDQQKSEGVTPGEDVYI

Query:  ILRLDGRIRRSGRGMPDWQKIIEELPPMEALLSKLEK
        ILRLDGR+RRSGRGMPDWQKIIEELPPM+ALLSKLE+
Subjt:  ILRLDGRIRRSGRGMPDWQKIIEELPPMEALLSKLEK

XP_038905239.1 protein LOW PSII ACCUMULATION 1, chloroplastic [Benincasa hispida]

4.25e-293

95.16

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Query:  MAMATLPLFHHLPTLSNPKSPTILRPRLPTSQRTFHLSILSCSSTSQSPEANLQSAESCVNLGLQLFSKGRVKEALVQFEAALNMDPNPMEAQAAFYNKA
        MAMATLPLFHHL T S+PKS TILRPRL TSQR FH+SIL  SSTSQSPEANL+SAESCVNLGLQLFSKGRVKEALVQFEAALNMDPNPMEAQAA YNKA
Subjt:  MAMATLPLFHHLPTLSNPKSPTILRPRLPTSQRTFHLSILSCSSTSQSPEANLQSAESCVNLGLQLFSKGRVKEALVQFEAALNMDPNPMEAQAAFYNKA

Query:  CCHAYRGEGKKAADCLRVALREYNLKFGTILNDPDLASFRALPEFKELQEEARMGGEDIGYGFRRDLKLISEVQAPFRGVRRFFYVALSAAAGISLLFNI
        CCHAYRGEGKKAADCLRVALREYNLKFGTILNDPDLASFRALPEFKELQEEARMGGEDIGYGFRRDLKLISEVQAPFRGVRRFF VALSAAAGISLLFNI
Subjt:  CCHAYRGEGKKAADCLRVALREYNLKFGTILNDPDLASFRALPEFKELQEEARMGGEDIGYGFRRDLKLISEVQAPFRGVRRFFYVALSAAAGISLLFNI

Query:  PRLFRAIQGGDGAPDVWETAGNLAVNVGGIIVFVALFLWDNKKEEEQLAQISRNETLSRLPLRLSTNRIVELVQLRDTVRPVILAGKKETVSSAIQKAER
        PRLFRAIQGGDGAPDVWETAGNLAVNVGGI+VFVALFLWDNKKEEEQL+QISRNETLSRLPLRLSTNRIVELVQLRDTVRPVILAGKKETVSSAIQKAER
Subjt:  PRLFRAIQGGDGAPDVWETAGNLAVNVGGIIVFVALFLWDNKKEEEQLAQISRNETLSRLPLRLSTNRIVELVQLRDTVRPVILAGKKETVSSAIQKAER

Query:  FRTELLRRGVLLVPVIWGEGREPQIEKKGFGAPAAAATALPSIGEDFEKRAQSITAKSKLKAEIRFRAEVISPAEWESWIRDQQKSEGVTPGEDVYIILR
        FRTELLRRGVLLVPVIWGEGREPQIEKKGFGAPA  A ALPSIGEDFEKRAQSITAKSKLKAEIRFRAEV+SPAEWESWIRDQQKSE VTPGEDVYIILR
Subjt:  FRTELLRRGVLLVPVIWGEGREPQIEKKGFGAPAAAATALPSIGEDFEKRAQSITAKSKLKAEIRFRAEVISPAEWESWIRDQQKSEGVTPGEDVYIILR

Query:  LDGRIRRSGRGMPDWQKIIEELPPMEALLSKLEK
        LDGR+RRSGRGMPDWQKIIEELPPMEALLSKLE+
Subjt:  LDGRIRRSGRGMPDWQKIIEELPPMEALLSKLEK

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KT96 TPR_REGION domain-containing protein

2.8e-236

97.47

Show/hide

Query:  MAMATLPLFHHLPTLSNPKSPTILRPRLPTSQRTFHLSILSCSSTSQSPEANLQSAESCVNLGLQLFSKGRVKEALVQFEAALNMDPNPMEAQAAFYNKA
        MAMATLPLFHHLPTLSNPKS TILRPRLPTSQRTF LSILSCSSTSQSPEANLQSAESCVN GLQLFSKGRVKEALVQFEAALNMDPNPMEAQAA YNKA
Subjt:  MAMATLPLFHHLPTLSNPKSPTILRPRLPTSQRTFHLSILSCSSTSQSPEANLQSAESCVNLGLQLFSKGRVKEALVQFEAALNMDPNPMEAQAAFYNKA

Query:  CCHAYRGEGKKAADCLRVALREYNLKFGTILNDPDLASFRALPEFKELQEEARMGGEDIGYGFRRDLKLISEVQAPFRGVRRFFYVALSAAAGISLLFNI
        CCHAYRGEGKKAADCLRVALREYNLKFGTILNDPDLASFRALPEFKELQEEARMGGEDIGYGFRRDLKLISEVQAPFRGVR+FFYVALSAAAGISLLFNI
Subjt:  CCHAYRGEGKKAADCLRVALREYNLKFGTILNDPDLASFRALPEFKELQEEARMGGEDIGYGFRRDLKLISEVQAPFRGVRRFFYVALSAAAGISLLFNI

Query:  PRLFRAIQGGDGAPDVWETAGNLAVNVGGIIVFVALFLWDNKKEEEQLAQISRNETLSRLPLRLSTNRIVELVQLRDTVRPVILAGKKETVSSAIQKAER
        PRLFRAIQGGDGAPDVWETAGNLAVNVGGIIVFVALFLWDNKKEEEQLAQISRNETLSRLPLRLSTNRIVELVQLRDTVRPVILAGKKETVSSAIQKAER
Subjt:  PRLFRAIQGGDGAPDVWETAGNLAVNVGGIIVFVALFLWDNKKEEEQLAQISRNETLSRLPLRLSTNRIVELVQLRDTVRPVILAGKKETVSSAIQKAER

Query:  FRTELLRRGVLLVPVIWGEGREPQIEKKGFGAP-AAAATALPSIGEDFEKRAQSITAKSKLKAEIRFRAEVISPAEWESWIRDQQKSEGVTPGEDVYIIL
        FRTELLRRGVLLVPVIWGEGREPQIEKKGFGAP  AAA ALPSIGEDFEKRAQSITAKSKLKAEIRFRAEVISPAEWESWIR+QQ+SEGVTPGEDVYIIL
Subjt:  FRTELLRRGVLLVPVIWGEGREPQIEKKGFGAP-AAAATALPSIGEDFEKRAQSITAKSKLKAEIRFRAEVISPAEWESWIRDQQKSEGVTPGEDVYIIL

Query:  RLDGRIRRSGRGMPDWQKIIEELPPMEALLSKLEK
        RLDGR+RRSGRGMPDWQKIIEELPPMEALLSKLEK
Subjt:  RLDGRIRRSGRGMPDWQKIIEELPPMEALLSKLEK

A0A1S3BYE8 protein LOW PSII ACCUMULATION 1, chloroplastic isoform X1

1.8e-243

100

Show/hide

Query:  MAMATLPLFHHLPTLSNPKSPTILRPRLPTSQRTFHLSILSCSSTSQSPEANLQSAESCVNLGLQLFSKGRVKEALVQFEAALNMDPNPMEAQAAFYNKA
        MAMATLPLFHHLPTLSNPKSPTILRPRLPTSQRTFHLSILSCSSTSQSPEANLQSAESCVNLGLQLFSKGRVKEALVQFEAALNMDPNPMEAQAAFYNKA
Subjt:  MAMATLPLFHHLPTLSNPKSPTILRPRLPTSQRTFHLSILSCSSTSQSPEANLQSAESCVNLGLQLFSKGRVKEALVQFEAALNMDPNPMEAQAAFYNKA

Query:  CCHAYRGEGKKAADCLRVALREYNLKFGTILNDPDLASFRALPEFKELQEEARMGGEDIGYGFRRDLKLISEVQAPFRGVRRFFYVALSAAAGISLLFNI
        CCHAYRGEGKKAADCLRVALREYNLKFGTILNDPDLASFRALPEFKELQEEARMGGEDIGYGFRRDLKLISEVQAPFRGVRRFFYVALSAAAGISLLFNI
Subjt:  CCHAYRGEGKKAADCLRVALREYNLKFGTILNDPDLASFRALPEFKELQEEARMGGEDIGYGFRRDLKLISEVQAPFRGVRRFFYVALSAAAGISLLFNI

Query:  PRLFRAIQGGDGAPDVWETAGNLAVNVGGIIVFVALFLWDNKKEEEQLAQISRNETLSRLPLRLSTNRIVELVQLRDTVRPVILAGKKETVSSAIQKAER
        PRLFRAIQGGDGAPDVWETAGNLAVNVGGIIVFVALFLWDNKKEEEQLAQISRNETLSRLPLRLSTNRIVELVQLRDTVRPVILAGKKETVSSAIQKAER
Subjt:  PRLFRAIQGGDGAPDVWETAGNLAVNVGGIIVFVALFLWDNKKEEEQLAQISRNETLSRLPLRLSTNRIVELVQLRDTVRPVILAGKKETVSSAIQKAER

Query:  FRTELLRRGVLLVPVIWGEGREPQIEKKGFGAPAAAATALPSIGEDFEKRAQSITAKSKLKAEIRFRAEVISPAEWESWIRDQQKSEGVTPGEDVYIILR
        FRTELLRRGVLLVPVIWGEGREPQIEKKGFGAPAAAATALPSIGEDFEKRAQSITAKSKLKAEIRFRAEVISPAEWESWIRDQQKSEGVTPGEDVYIILR
Subjt:  FRTELLRRGVLLVPVIWGEGREPQIEKKGFGAPAAAATALPSIGEDFEKRAQSITAKSKLKAEIRFRAEVISPAEWESWIRDQQKSEGVTPGEDVYIILR

Query:  LDGRIRRSGRGMPDWQKIIEELPPMEALLSKLEK
        LDGRIRRSGRGMPDWQKIIEELPPMEALLSKLEK
Subjt:  LDGRIRRSGRGMPDWQKIIEELPPMEALLSKLEK

A0A5A7TR76 Protein LOW PSII ACCUMULATION 1

1.8e-243

100

Show/hide

Query:  MAMATLPLFHHLPTLSNPKSPTILRPRLPTSQRTFHLSILSCSSTSQSPEANLQSAESCVNLGLQLFSKGRVKEALVQFEAALNMDPNPMEAQAAFYNKA
        MAMATLPLFHHLPTLSNPKSPTILRPRLPTSQRTFHLSILSCSSTSQSPEANLQSAESCVNLGLQLFSKGRVKEALVQFEAALNMDPNPMEAQAAFYNKA
Subjt:  MAMATLPLFHHLPTLSNPKSPTILRPRLPTSQRTFHLSILSCSSTSQSPEANLQSAESCVNLGLQLFSKGRVKEALVQFEAALNMDPNPMEAQAAFYNKA

Query:  CCHAYRGEGKKAADCLRVALREYNLKFGTILNDPDLASFRALPEFKELQEEARMGGEDIGYGFRRDLKLISEVQAPFRGVRRFFYVALSAAAGISLLFNI
        CCHAYRGEGKKAADCLRVALREYNLKFGTILNDPDLASFRALPEFKELQEEARMGGEDIGYGFRRDLKLISEVQAPFRGVRRFFYVALSAAAGISLLFNI
Subjt:  CCHAYRGEGKKAADCLRVALREYNLKFGTILNDPDLASFRALPEFKELQEEARMGGEDIGYGFRRDLKLISEVQAPFRGVRRFFYVALSAAAGISLLFNI

Query:  PRLFRAIQGGDGAPDVWETAGNLAVNVGGIIVFVALFLWDNKKEEEQLAQISRNETLSRLPLRLSTNRIVELVQLRDTVRPVILAGKKETVSSAIQKAER
        PRLFRAIQGGDGAPDVWETAGNLAVNVGGIIVFVALFLWDNKKEEEQLAQISRNETLSRLPLRLSTNRIVELVQLRDTVRPVILAGKKETVSSAIQKAER
Subjt:  PRLFRAIQGGDGAPDVWETAGNLAVNVGGIIVFVALFLWDNKKEEEQLAQISRNETLSRLPLRLSTNRIVELVQLRDTVRPVILAGKKETVSSAIQKAER

Query:  FRTELLRRGVLLVPVIWGEGREPQIEKKGFGAPAAAATALPSIGEDFEKRAQSITAKSKLKAEIRFRAEVISPAEWESWIRDQQKSEGVTPGEDVYIILR
        FRTELLRRGVLLVPVIWGEGREPQIEKKGFGAPAAAATALPSIGEDFEKRAQSITAKSKLKAEIRFRAEVISPAEWESWIRDQQKSEGVTPGEDVYIILR
Subjt:  FRTELLRRGVLLVPVIWGEGREPQIEKKGFGAPAAAATALPSIGEDFEKRAQSITAKSKLKAEIRFRAEVISPAEWESWIRDQQKSEGVTPGEDVYIILR

Query:  LDGRIRRSGRGMPDWQKIIEELPPMEALLSKLEK
        LDGRIRRSGRGMPDWQKIIEELPPMEALLSKLEK
Subjt:  LDGRIRRSGRGMPDWQKIIEELPPMEALLSKLEK

A0A6J1CPA1 protein LOW PSII ACCUMULATION 1, chloroplastic isoform X1

2.4e-224

91.1

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Query:  MAMATLPLFHHLPTLSNPKSPTILRPRLPTS----QRTFHLSILSCSSTSQSPEANLQSAESCVNLGLQLFSKGRVKEALVQFEAALNMDPNPMEAQAAF
        MA+ATLPL+HHL   SNPKS T LRPRLPTS     + FHLSI  CSSTSQSPEAN+++AESCVNLGLQLFSKGRVKEALVQF+AALN+DPNP+EAQAAF
Subjt:  MAMATLPLFHHLPTLSNPKSPTILRPRLPTS----QRTFHLSILSCSSTSQSPEANLQSAESCVNLGLQLFSKGRVKEALVQFEAALNMDPNPMEAQAAF

Query:  YNKACCHAYRGEGKKAADCLRVALREYNLKFGTILNDPDLASFRALPEFKELQEEARMGGEDIGYGFRRDLKLISEVQAPFRGVRRFFYVALSAAAGISL
        YNKACCHAYRGEGKKAADCLRVALREYNLKFGTILNDPDLASFRALPEFKELQEEAR+GGEDIGYGFRRDLKLISEVQAPFRGVR+FFYVALSAAAGISL
Subjt:  YNKACCHAYRGEGKKAADCLRVALREYNLKFGTILNDPDLASFRALPEFKELQEEARMGGEDIGYGFRRDLKLISEVQAPFRGVRRFFYVALSAAAGISL

Query:  LFNIPRLFRAIQGGDGAPDVWETAGNLAVNVGGIIVFVALFLWDNKKEEEQLAQISRNETLSRLPLRLSTNRIVELVQLRDTVRPVILAGKKETVSSAIQ
        LF IPRLFRAIQGGD APDVWETAGNLAVN+GGIIV VALFLWDNKKEEEQLAQISRNETLSRLPLRLSTNRIVELVQLRDTVRPVILAGKKETVSSAIQ
Subjt:  LFNIPRLFRAIQGGDGAPDVWETAGNLAVNVGGIIVFVALFLWDNKKEEEQLAQISRNETLSRLPLRLSTNRIVELVQLRDTVRPVILAGKKETVSSAIQ

Query:  KAERFRTELLRRGVLLVPVIWGEGREPQIEKKGFGAPAAAATALPSIGEDFEKRAQSITAKSKLKAEIRFRAEVISPAEWESWIRDQQKSEGVTPGEDVY
        KAERFRTELLRRGVLLVPV+WGEGREPQIEK+GFGAP  A   LPSIGEDFEKRAQSITAKSKLKAEIRFRAEV+SPAEWESWIRDQQKSEGVTPGEDVY
Subjt:  KAERFRTELLRRGVLLVPVIWGEGREPQIEKKGFGAPAAAATALPSIGEDFEKRAQSITAKSKLKAEIRFRAEVISPAEWESWIRDQQKSEGVTPGEDVY

Query:  IILRLDGRIRRSGRGMPDWQKIIEELPPMEALLSKLEK
        IILRLDGR+RRSGRGMPDW KIIEELPPMEALLSKLE+
Subjt:  IILRLDGRIRRSGRGMPDWQKIIEELPPMEALLSKLEK

A0A6J1J7F4 protein LOW PSII ACCUMULATION 1, chloroplastic

4.6e-223

91.76

Show/hide

Query:  MAMATLPLFHHLPTLSNPKSPTILRPRLPT--SQRTFHLSILSCSSTSQSPEANLQSAESCVNLGLQLFSKGRVKEALVQFEAALNMDPNPMEAQAAFYN
        + MATLP+FH L TLSNPKS TILR RLPT  SQR FH+SIL CSSTSQSPE N++SAES VNLGLQLFSKGRVKEALVQFEAAL+M+PNPMEAQAA YN
Subjt:  MAMATLPLFHHLPTLSNPKSPTILRPRLPT--SQRTFHLSILSCSSTSQSPEANLQSAESCVNLGLQLFSKGRVKEALVQFEAALNMDPNPMEAQAAFYN

Query:  KACCHAYRGEGKKAADCLRVALREYNLKFGTILNDPDLASFRALPEFKELQEEARMGGEDIGYGFRRDLKLISEVQAPFRGVRRFFYVALSAAAGISLLF
        KACCHAYRGEGKKAADCLRVALREYNLKFGTILNDPDLASFRALPEFKELQEEARMGGEDIGYGFRRDLKLISEVQAPFRGVRRFFYVALSAAAGISLLF
Subjt:  KACCHAYRGEGKKAADCLRVALREYNLKFGTILNDPDLASFRALPEFKELQEEARMGGEDIGYGFRRDLKLISEVQAPFRGVRRFFYVALSAAAGISLLF

Query:  NIPRLFRAIQGGDGAPDVWETAGNLAVNVGGIIVFVALFLWDNKKEEEQLAQISRNETLSRLPLRLSTNRIVELVQLRDTVRPVILAGKKETVSSAIQKA
        N+PRLFRAIQGG+ APDVWET GNLAVNVGGI+VFVALFLWDNKKEEEQLAQISRNETLSRLPLRLSTNR+VELVQLRDTVRPVILAGKKETVSSAIQKA
Subjt:  NIPRLFRAIQGGDGAPDVWETAGNLAVNVGGIIVFVALFLWDNKKEEEQLAQISRNETLSRLPLRLSTNRIVELVQLRDTVRPVILAGKKETVSSAIQKA

Query:  ERFRTELLRRGVLLVPVIWGEGREPQIEKKGFGAPA-AAATALPSIGEDFEKRAQSITAKSKLKAEIRFRAEVISPAEWESWIRDQQKSEGVTPGEDVYI
        ERFRTELLRRGVLLVPVIW EGREP++EKKGFGAPA A + ALPSIGEDFEKRAQSITAKSKLKAEIRFRA+VISPAEWESWIRDQQKSEGVTPGEDVYI
Subjt:  ERFRTELLRRGVLLVPVIWGEGREPQIEKKGFGAPA-AAATALPSIGEDFEKRAQSITAKSKLKAEIRFRAEVISPAEWESWIRDQQKSEGVTPGEDVYI

Query:  ILRLDGRIRRSGRGMPDWQKIIEELPPMEALLSKLEK
        ILRLDGR+RRSGRGMPDWQKIIEELPPM+ALLSKLE+
Subjt:  ILRLDGRIRRSGRGMPDWQKIIEELPPMEALLSKLEK

SwissProt top hits

e value

%identity

Alignment

Q9SRY4 Protein LOW PSII ACCUMULATION 1, chloroplastic

9.0e-176

70.42

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Query:  MAMATLP-LFHHLP-TLSNPKSPT-ILRPRLPTSQRTF---------HLSILSCSSTSQS---PEANLQ----SAESCVNLGLQLFSKGRVKEALVQFEA
        MA+AT P L  H P  +SN  S     RP LP    T          HL + + SS+S S   P  N      +AE CVN GL LF +GRVK+ALVQFE 
Subjt:  MAMATLP-LFHHLP-TLSNPKSPT-ILRPRLPTSQRTF---------HLSILSCSSTSQS---PEANLQ----SAESCVNLGLQLFSKGRVKEALVQFEA

Query:  ALNMDPNPMEAQAAFYNKACCHAYRGEGKKAADCLRVALREYNLKFGTILNDPDLASFRALPEFKELQEEARMGGEDIGYGFRRDLKLISEVQAPFRGVR
        AL++ PNP+E+QAA+YNKACCHAYRGEGKKA DCLR+ALR+YNLKF TILNDPDLASFRALPEFKELQEEAR+GGEDIG  FRRDLKLISEV+APFRGVR
Subjt:  ALNMDPNPMEAQAAFYNKACCHAYRGEGKKAADCLRVALREYNLKFGTILNDPDLASFRALPEFKELQEEARMGGEDIGYGFRRDLKLISEVQAPFRGVR

Query:  RFFYVALSAAAGISLLFNIPRLFRAIQGGDGAPDVWETAGNLAVNVGGIIVFVALFLWDNKKEEEQLAQISRNETLSRLPLRLSTNRIVELVQLRDTVRP
        +FFY A +AAAGIS+ F +PRL +AI+GGDGAP++ ET GN A+N+GGI+V V+LFLW+NKKEEEQ+ QI+R+ETLSRLPLRLSTNR+VELVQLRDTVRP
Subjt:  RFFYVALSAAAGISLLFNIPRLFRAIQGGDGAPDVWETAGNLAVNVGGIIVFVALFLWDNKKEEEQLAQISRNETLSRLPLRLSTNRIVELVQLRDTVRP

Query:  VILAGKKETVSSAIQKAERFRTELLRRGVLLVPVIWGEGREPQIEKKGFGAPAAAATALPSIGEDFEKRAQSITAKSKLKAEIRFRAEVISPAEWESWIR
        VILAGKKETV+ A+QKA+RFRTELLRRGVLLVPV+WGE + P+IEKKGFGA + AAT+LPSIGEDF+ RAQS+ A+SKLK EIRF+AE +SP EWE WIR
Subjt:  VILAGKKETVSSAIQKAERFRTELLRRGVLLVPVIWGEGREPQIEKKGFGAPAAAATALPSIGEDFEKRAQSITAKSKLKAEIRFRAEVISPAEWESWIR

Query:  DQQKSEGVTPGEDVYIILRLDGRIRRSGRGMPDWQKIIEELPPMEALLSKLEK
        DQQ SEGV PG+DVYIILRLDGR+RRSGRGMPDW +I +ELPPM+ +LSKLE+
Subjt:  DQQKSEGVTPGEDVYIILRLDGRIRRSGRGMPDWQKIIEELPPMEALLSKLEK

Arabidopsis top hits

e value

%identity

Alignment

AT1G02910.1 tetratricopeptide repeat (TPR)-containing protein

6.4e-177

70.42

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Query:  MAMATLP-LFHHLP-TLSNPKSPT-ILRPRLPTSQRTF---------HLSILSCSSTSQS---PEANLQ----SAESCVNLGLQLFSKGRVKEALVQFEA
        MA+AT P L  H P  +SN  S     RP LP    T          HL + + SS+S S   P  N      +AE CVN GL LF +GRVK+ALVQFE 
Subjt:  MAMATLP-LFHHLP-TLSNPKSPT-ILRPRLPTSQRTF---------HLSILSCSSTSQS---PEANLQ----SAESCVNLGLQLFSKGRVKEALVQFEA

Query:  ALNMDPNPMEAQAAFYNKACCHAYRGEGKKAADCLRVALREYNLKFGTILNDPDLASFRALPEFKELQEEARMGGEDIGYGFRRDLKLISEVQAPFRGVR
        AL++ PNP+E+QAA+YNKACCHAYRGEGKKA DCLR+ALR+YNLKF TILNDPDLASFRALPEFKELQEEAR+GGEDIG  FRRDLKLISEV+APFRGVR
Subjt:  ALNMDPNPMEAQAAFYNKACCHAYRGEGKKAADCLRVALREYNLKFGTILNDPDLASFRALPEFKELQEEARMGGEDIGYGFRRDLKLISEVQAPFRGVR

Query:  RFFYVALSAAAGISLLFNIPRLFRAIQGGDGAPDVWETAGNLAVNVGGIIVFVALFLWDNKKEEEQLAQISRNETLSRLPLRLSTNRIVELVQLRDTVRP
        +FFY A +AAAGIS+ F +PRL +AI+GGDGAP++ ET GN A+N+GGI+V V+LFLW+NKKEEEQ+ QI+R+ETLSRLPLRLSTNR+VELVQLRDTVRP
Subjt:  RFFYVALSAAAGISLLFNIPRLFRAIQGGDGAPDVWETAGNLAVNVGGIIVFVALFLWDNKKEEEQLAQISRNETLSRLPLRLSTNRIVELVQLRDTVRP

Query:  VILAGKKETVSSAIQKAERFRTELLRRGVLLVPVIWGEGREPQIEKKGFGAPAAAATALPSIGEDFEKRAQSITAKSKLKAEIRFRAEVISPAEWESWIR
        VILAGKKETV+ A+QKA+RFRTELLRRGVLLVPV+WGE + P+IEKKGFGA + AAT+LPSIGEDF+ RAQS+ A+SKLK EIRF+AE +SP EWE WIR
Subjt:  VILAGKKETVSSAIQKAERFRTELLRRGVLLVPVIWGEGREPQIEKKGFGAPAAAATALPSIGEDFEKRAQSITAKSKLKAEIRFRAEVISPAEWESWIR

Query:  DQQKSEGVTPGEDVYIILRLDGRIRRSGRGMPDWQKIIEELPPMEALLSKLEK
        DQQ SEGV PG+DVYIILRLDGR+RRSGRGMPDW +I +ELPPM+ +LSKLE+
Subjt:  DQQKSEGVTPGEDVYIILRLDGRIRRSGRGMPDWQKIIEELPPMEALLSKLEK

AT4G28740.1 FUNCTIONS IN: molecular_function unknown

8.8e-33

31.34

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Query:  DLKLISEVQAPFRGVRRFFYVALSAAAGISLLFNIPRLFRAIQGGDGAPDVWETAGNLAVNVGGIIVFVALFLWDNKKEEEQLAQISRNETLSRLPLRL-
        D ++ SEV +PFR VR FFY+A  A+  +  L    RL  A+     + +V E    L V++G   +F  L+  +NK +  Q+A++SR E L +L +R+ 
Subjt:  DLKLISEVQAPFRGVRRFFYVALSAAAGISLLFNIPRLFRAIQGGDGAPDVWETAGNLAVNVGGIIVFVALFLWDNKKEEEQLAQISRNETLSRLPLRL-

Query:  STNRIVELVQLRDTVRPVILAGKKETVSSAIQKAERFRTELLRRGVLLVPVIWGEGREPQIEKKGFGAPAAAATALPSIGEDFEKRAQSITAKSKLKAEI
          N+++ +  LR   R VI AG  E +  A ++++ +   L+ RGV++V     +G  P +E   F     A        E+  +R + +          
Subjt:  STNRIVELVQLRDTVRPVILAGKKETVSSAIQKAERFRTELLRRGVLLVPVIWGEGREPQIEKKGFGAPAAAATALPSIGEDFEKRAQSITAKSKLKAEI

Query:  RFRAEVISPAEWESWIRDQQKSEGVTPGEDVYIILRLDGRIRRSGRGMPDWQKIIEELPPMEALLSKL
         +R   +   EWE W+ +Q+K   V+    VY+ LRLDGR+R SG G P WQ  + +LPP++ + + L
Subjt:  RFRAEVISPAEWESWIRDQQKSEGVTPGEDVYIILRLDGRIRRSGRGMPDWQKIIEELPPMEALLSKL

Sequences

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CDS sequence

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ATGGCTATGGCTACTCTTCCTCTGTTCCACCACCTCCCCACCCTTTCGAACCCCAAATCACCCACCATTCTCAGGCCCCGGTTACCCACTTCTCAAAGAACTTTCCATCT
CTCTATTCTCTCTTGCTCTTCTACTTCCCAGTCCCCAGAAGCTAATCTCCAATCTGCAGAGTCCTGTGTCAATCTCGGTCTCCAGCTCTTCTCTAAAGGACGGGTCAAAG
AAGCTTTGGTCCAGTTTGAAGCAGCTCTGAATATGGATCCCAACCCAATGGAGGCTCAAGCTGCTTTTTACAATAAAGCATGCTGTCATGCCTATCGTGGGGAAGGAAAG
AAAGCCGCCGACTGTCTGCGTGTCGCACTAAGAGAATATAACCTGAAATTTGGCACGATTCTGAATGATCCTGACTTGGCCTCATTCAGAGCTCTTCCTGAATTCAAGGA
ATTACAAGAAGAGGCTAGGATGGGAGGAGAGGATATAGGATACGGTTTTCGAAGAGATCTTAAACTCATCAGTGAAGTTCAAGCACCTTTTCGTGGGGTTCGGAGGTTCT
TTTATGTGGCACTATCTGCAGCAGCTGGAATTTCATTACTGTTTAACATACCCAGGTTATTTCGTGCTATTCAAGGTGGTGATGGAGCTCCTGATGTTTGGGAAACTGCT
GGAAATTTAGCTGTTAATGTTGGAGGTATTATTGTTTTTGTGGCATTATTTTTATGGGACAACAAGAAAGAAGAGGAACAGCTTGCACAAATATCAAGAAACGAAACATT
ATCGAGGTTGCCTCTACGTCTTTCCACCAATCGGATTGTTGAACTTGTACAGCTTCGAGATACTGTAAGACCGGTCATTTTAGCTGGAAAAAAGGAGACTGTTTCTTCAG
CCATTCAAAAGGCAGAAAGGTTCAGAACTGAGCTCCTTAGACGAGGTGTGCTCTTAGTTCCTGTCATATGGGGTGAAGGTAGAGAACCCCAAATAGAAAAGAAAGGGTTT
GGTGCTCCAGCCGCTGCCGCCACCGCCCTGCCATCTATTGGGGAAGATTTTGAGAAACGAGCTCAGTCTATAACTGCAAAATCGAAGTTGAAAGCTGAAATTCGGTTCAG
GGCCGAGGTTATATCACCTGCAGAATGGGAAAGTTGGATAAGAGACCAGCAGAAATCCGAAGGGGTCACCCCTGGTGAGGATGTCTACATAATATTGCGATTGGATGGTC
GAATTCGAAGATCAGGAAGAGGGATGCCTGACTGGCAAAAAATTATTGAAGAGTTACCACCAATGGAAGCTCTTCTAAGCAAGCTAGAAAAATGA

mRNA sequence

Show/hide mRNA sequence

Protein sequence

Show/hide protein sequence

MAMATLPLFHHLPTLSNPKSPTILRPRLPTSQRTFHLSILSCSSTSQSPEANLQSAESCVNLGLQLFSKGRVKEALVQFEAALNMDPNPMEAQAAFYNKACCHAYRGEGK
KAADCLRVALREYNLKFGTILNDPDLASFRALPEFKELQEEARMGGEDIGYGFRRDLKLISEVQAPFRGVRRFFYVALSAAAGISLLFNIPRLFRAIQGGDGAPDVWETA
GNLAVNVGGIIVFVALFLWDNKKEEEQLAQISRNETLSRLPLRLSTNRIVELVQLRDTVRPVILAGKKETVSSAIQKAERFRTELLRRGVLLVPVIWGEGREPQIEKKGF
GAPAAAATALPSIGEDFEKRAQSITAKSKLKAEIRFRAEVISPAEWESWIRDQQKSEGVTPGEDVYIILRLDGRIRRSGRGMPDWQKIIEELPPMEALLSKLEK

IVF0020720 (gene) of Melon (IVF77) v1 genome