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IVF0020730 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0020730
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionRetrotransposon protein
Genome locationchr06:23215930..23216675
RNA-Seq ExpressionIVF0020730
SyntenyIVF0020730
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0035621.1 retrotransposon protein [Cucumis melo var. makuwa]1.73e-9971.17Show/hide
Query:  MRGPNCSGFGWNDEKKCIVAEKEVFDDWVKSHPAAKGLLNKSFVHYDELSYVFGKDRATGGRAESFADIGSNDPPGYDAFAADAVPDTDFPPMYSPGLNM
        MRGPNCSGFGWNDEKKCIVAEKEVFDDW  SHPAAKGLLNKSFVHYDELSYVFGKDRATGGRAESFADIGSNDPPGYDA AADA+PDTDFPPMYSPGLNM
Subjt:  MRGPNCSGFGWNDEKKCIVAEKEVFDDWVKSHPAAKGLLNKSFVHYDELSYVFGKDRATGGRAESFADIGSNDPPGYDAFAADAVPDTDFPPMYSPGLNM

Query:  SPDDLMETRTARVSERRN---------------------------------------------------------AIPELTLMDRCRLMRILMRNVDDMK
        SPDDLMETRTARVSERRN                                                         AIPELTLMDRCRLMRILMRNVDDMK
Subjt:  SPDDLMETRTARVSERRN---------------------------------------------------------AIPELTLMDRCRLMRILMRNVDDMK

Query:  AFLEVPDNMKYPYCSIILQENR
        AFLEVPD+MKYPYCS+ILQEN+
Subjt:  AFLEVPDNMKYPYCSIILQENR

KAA0038122.1 retrotransposon protein [Cucumis melo var. makuwa]3.48e-9971.17Show/hide
Query:  MRGPNCSGFGWNDEKKCIVAEKEVFDDWVKSHPAAKGLLNKSFVHYDELSYVFGKDRATGGRAESFADIGSNDPPGYDAFAADAVPDTDFPPMYSPGLNM
        MRGPNCSGFGWNDEKKCIVAEKEVFDDW  SHPAAKGLLNKSFVHYDELSYVFGKDRATGGRAESFADIGSNDPPGYDA AADA+PDTDFPPMYSPGLNM
Subjt:  MRGPNCSGFGWNDEKKCIVAEKEVFDDWVKSHPAAKGLLNKSFVHYDELSYVFGKDRATGGRAESFADIGSNDPPGYDAFAADAVPDTDFPPMYSPGLNM

Query:  SPDDLMETRTARVSERRN---------------------------------------------------------AIPELTLMDRCRLMRILMRNVDDMK
        SPDDLMETRTARVSERRN                                                         AIPELTLMDRCRLMRILMRNVDDMK
Subjt:  SPDDLMETRTARVSERRN---------------------------------------------------------AIPELTLMDRCRLMRILMRNVDDMK

Query:  AFLEVPDNMKYPYCSIILQENR
        AFLEVPD+MKYPYCS+ILQEN+
Subjt:  AFLEVPDNMKYPYCSIILQENR

KAA0048362.1 retrotransposon protein [Cucumis melo var. makuwa]1.52e-9971.17Show/hide
Query:  MRGPNCSGFGWNDEKKCIVAEKEVFDDWVKSHPAAKGLLNKSFVHYDELSYVFGKDRATGGRAESFADIGSNDPPGYDAFAADAVPDTDFPPMYSPGLNM
        MRGPNCSGFGWNDEKKCIVAEKEVFDDW  SHPAAKGLLNKSFVHYDELSYVFGKDRATGGRAESFADIGSNDPPGYDA AADA+PDTDFPPMYSPGLNM
Subjt:  MRGPNCSGFGWNDEKKCIVAEKEVFDDWVKSHPAAKGLLNKSFVHYDELSYVFGKDRATGGRAESFADIGSNDPPGYDAFAADAVPDTDFPPMYSPGLNM

Query:  SPDDLMETRTARVSERRN---------------------------------------------------------AIPELTLMDRCRLMRILMRNVDDMK
        SPDDLMETRTARVSERRN                                                         AIPELTLMDRCRLMRILMRNVDDMK
Subjt:  SPDDLMETRTARVSERRN---------------------------------------------------------AIPELTLMDRCRLMRILMRNVDDMK

Query:  AFLEVPDNMKYPYCSIILQENR
        AFLEVPD+MKYPYCS+ILQEN+
Subjt:  AFLEVPDNMKYPYCSIILQENR

KAA0050782.1 retrotransposon protein [Cucumis melo var. makuwa]2.98e-10171.17Show/hide
Query:  MRGPNCSGFGWNDEKKCIVAEKEVFDDWVKSHPAAKGLLNKSFVHYDELSYVFGKDRATGGRAESFADIGSNDPPGYDAFAADAVPDTDFPPMYSPGLNM
        MR PNCSGFGWNDEKKCI+AEKEVFDDWVKSHPAAKGLLNKSFVHYDELSYVFGKDRATGGRAESFADIGSNDP GYDAFAAD V DTDFPPMYSPGLNM
Subjt:  MRGPNCSGFGWNDEKKCIVAEKEVFDDWVKSHPAAKGLLNKSFVHYDELSYVFGKDRATGGRAESFADIGSNDPPGYDAFAADAVPDTDFPPMYSPGLNM

Query:  SPDDLMETRTARVSERRN---------------------------------------------------------AIPELTLMDRCRLMRILMRNVDDMK
        SPDDLMETRTARVSERRN                                                         AIPELTLMDRCRLMRI+MRNVDDMK
Subjt:  SPDDLMETRTARVSERRN---------------------------------------------------------AIPELTLMDRCRLMRILMRNVDDMK

Query:  AFLEVPDNMKYPYCSIILQENR
        AFL+VPDNMKYPYCSIILQENR
Subjt:  AFLEVPDNMKYPYCSIILQENR

KAA0065737.1 retrotransposon protein [Cucumis melo var. makuwa]9.73e-10373.42Show/hide
Query:  MRGPNCSGFGWNDEKKCIVAEKEVFDDWVKSHPAAKGLLNKSFVHYDELSYVFGKDRATGGRAESFADIGSNDPPGYDAFAADAVPDTDFPPMYSPGLNM
        MRGPNCSGFGWNDEKKCIVAEKEVFDDW  SHPAAKGLLNKSFVHYDELSYVFGKDRATGGRAESFADIGSNDPPGYDAFAADAVPDTDFPPMYSPGLNM
Subjt:  MRGPNCSGFGWNDEKKCIVAEKEVFDDWVKSHPAAKGLLNKSFVHYDELSYVFGKDRATGGRAESFADIGSNDPPGYDAFAADAVPDTDFPPMYSPGLNM

Query:  SPDDLMETRTARVSERRN---------------------------------------------------------AIPELTLMDRCRLMRILMRNVDDMK
        SPDDLMETRTARVSERRN                                                         AIPELTLMDRCRLMRILMRNVDDMK
Subjt:  SPDDLMETRTARVSERRN---------------------------------------------------------AIPELTLMDRCRLMRILMRNVDDMK

Query:  AFLEVPDNMKYPYCSIILQENR
        AFLEVPDNMKYPYCSIILQENR
Subjt:  AFLEVPDNMKYPYCSIILQENR

TrEMBL top hitse value%identityAlignment
A0A5A7TXU5 Retrotransposon protein4.1e-7971.17Show/hide
Query:  MRGPNCSGFGWNDEKKCIVAEKEVFDDWVKSHPAAKGLLNKSFVHYDELSYVFGKDRATGGRAESFADIGSNDPPGYDAFAADAVPDTDFPPMYSPGLNM
        MRGPNCSGFGWNDEKKCIVAEKEVFDDW  SHPAAKGLLNKSFVHYDELSYVFGKDRATGGRAESFADIGSNDPPGYDA AADA+PDTDFPPMYSPGLNM
Subjt:  MRGPNCSGFGWNDEKKCIVAEKEVFDDWVKSHPAAKGLLNKSFVHYDELSYVFGKDRATGGRAESFADIGSNDPPGYDAFAADAVPDTDFPPMYSPGLNM

Query:  SPDDLMETRTARVSERRN---------------------------------------------------------AIPELTLMDRCRLMRILMRNVDDMK
        SPDDLMETRTARVSERRN                                                         AIPELTLMDRCRLMRILMRNVDDMK
Subjt:  SPDDLMETRTARVSERRN---------------------------------------------------------AIPELTLMDRCRLMRILMRNVDDMK

Query:  AFLEVPDNMKYPYCSIILQENR
        AFLEVPD+MKYPYCS+ILQEN+
Subjt:  AFLEVPDNMKYPYCSIILQENR

A0A5A7U4M2 Retrotransposon protein6.3e-8071.17Show/hide
Query:  MRGPNCSGFGWNDEKKCIVAEKEVFDDWVKSHPAAKGLLNKSFVHYDELSYVFGKDRATGGRAESFADIGSNDPPGYDAFAADAVPDTDFPPMYSPGLNM
        MR PNCSGFGWNDEKKCI+AEKEVFDDWVKSHPAAKGLLNKSFVHYDELSYVFGKDRATGGRAESFADIGSNDP GYDAFAAD V DTDFPPMYSPGLNM
Subjt:  MRGPNCSGFGWNDEKKCIVAEKEVFDDWVKSHPAAKGLLNKSFVHYDELSYVFGKDRATGGRAESFADIGSNDPPGYDAFAADAVPDTDFPPMYSPGLNM

Query:  SPDDLMETRTARVSERRN---------------------------------------------------------AIPELTLMDRCRLMRILMRNVDDMK
        SPDDLMETRTARVSERRN                                                         AIPELTLMDRCRLMRI+MRNVDDMK
Subjt:  SPDDLMETRTARVSERRN---------------------------------------------------------AIPELTLMDRCRLMRILMRNVDDMK

Query:  AFLEVPDNMKYPYCSIILQENR
        AFL+VPDNMKYPYCSIILQENR
Subjt:  AFLEVPDNMKYPYCSIILQENR

A0A5A7UME4 Retrotransposon protein6.9e-7971.17Show/hide
Query:  MRGPNCSGFGWNDEKKCIVAEKEVFDDWVKSHPAAKGLLNKSFVHYDELSYVFGKDRATGGRAESFADIGSNDPPGYDAFAADAVPDTDFPPMYSPGLNM
        MRGPNCSGFGWNDEKKCIVAEKEVFDDW  SHPAAKGLLNKSFVHYDELSYVFGKDRATGGRAESFADIGSNDPPGYDA AADA+PDTDFPPMYSPGLNM
Subjt:  MRGPNCSGFGWNDEKKCIVAEKEVFDDWVKSHPAAKGLLNKSFVHYDELSYVFGKDRATGGRAESFADIGSNDPPGYDAFAADAVPDTDFPPMYSPGLNM

Query:  SPDDLMETRTARVSERRN---------------------------------------------------------AIPELTLMDRCRLMRILMRNVDDMK
        SPDDLMETRTARVSERRN                                                         AIPELTLMDRCRLMRILMRNVDDMK
Subjt:  SPDDLMETRTARVSERRN---------------------------------------------------------AIPELTLMDRCRLMRILMRNVDDMK

Query:  AFLEVPDNMKYPYCSIILQENR
        AFLEVPD+MKYPYCS+ILQEN+
Subjt:  AFLEVPDNMKYPYCSIILQENR

A0A5A7VF53 Retrotransposon protein1.5e-8173.42Show/hide
Query:  MRGPNCSGFGWNDEKKCIVAEKEVFDDWVKSHPAAKGLLNKSFVHYDELSYVFGKDRATGGRAESFADIGSNDPPGYDAFAADAVPDTDFPPMYSPGLNM
        MRGPNCSGFGWNDEKKCIVAEKEVFDDW  SHPAAKGLLNKSFVHYDELSYVFGKDRATGGRAESFADIGSNDPPGYDAFAADAVPDTDFPPMYSPGLNM
Subjt:  MRGPNCSGFGWNDEKKCIVAEKEVFDDWVKSHPAAKGLLNKSFVHYDELSYVFGKDRATGGRAESFADIGSNDPPGYDAFAADAVPDTDFPPMYSPGLNM

Query:  SPDDLMETRTARVSERRN---------------------------------------------------------AIPELTLMDRCRLMRILMRNVDDMK
        SPDDLMETRTARVSERRN                                                         AIPELTLMDRCRLMRILMRNVDDMK
Subjt:  SPDDLMETRTARVSERRN---------------------------------------------------------AIPELTLMDRCRLMRILMRNVDDMK

Query:  AFLEVPDNMKYPYCSIILQENR
        AFLEVPDNMKYPYCSIILQENR
Subjt:  AFLEVPDNMKYPYCSIILQENR

A0A5D3DPR5 Retrotransposon protein4.1e-7971.17Show/hide
Query:  MRGPNCSGFGWNDEKKCIVAEKEVFDDWVKSHPAAKGLLNKSFVHYDELSYVFGKDRATGGRAESFADIGSNDPPGYDAFAADAVPDTDFPPMYSPGLNM
        MRGPNCSGFGWNDEKKCIVAEKEVFDDW  SHPAAKGLLNKSFVHYDELSYVFGKDRATGGRAESFADIGSNDPPGYDA AADA+PDTDFPPMYSPGLNM
Subjt:  MRGPNCSGFGWNDEKKCIVAEKEVFDDWVKSHPAAKGLLNKSFVHYDELSYVFGKDRATGGRAESFADIGSNDPPGYDAFAADAVPDTDFPPMYSPGLNM

Query:  SPDDLMETRTARVSERRN---------------------------------------------------------AIPELTLMDRCRLMRILMRNVDDMK
        SPDDLMETRTARVSERRN                                                         AIPELTLMDRCRLMRILMRNVDDMK
Subjt:  SPDDLMETRTARVSERRN---------------------------------------------------------AIPELTLMDRCRLMRILMRNVDDMK

Query:  AFLEVPDNMKYPYCSIILQENR
        AFLEVPD+MKYPYCS+ILQEN+
Subjt:  AFLEVPDNMKYPYCSIILQENR

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G30140.1 unknown protein6.3e-0840.32Show/hide
Query:  SGFGWNDEKKCIVAEKEVFDDWVKSHPAAKGLLNKSFVHYDELSYVFGKDRATGGRAESFAD
        SGFGW+ E K   A  EV+ D++K+HP  K +  +S  H+++L  +FG   ATG  A   +D
Subjt:  SGFGWNDEKKCIVAEKEVFDDWVKSHPAAKGLLNKSFVHYDELSYVFGKDRATGGRAESFAD

AT2G24960.1 unknown protein9.4e-0425.84Show/hide
Query:  GFGWNDEKKCIVAEKEVFDDWVKSHPAAKGLLNKSFVHYDELSYVF------GKDRATGGRAESFADIGSNDPPGYDAFAADAVPDTDF
        GF W++ +  I A+  V+D ++K HP A+    KS   Y++L  +F      G D    G A   ++  ++     D       P  D+
Subjt:  GFGWNDEKKCIVAEKEVFDDWVKSHPAAKGLLNKSFVHYDELSYVF------GKDRATGGRAESFADIGSNDPPGYDAFAADAVPDTDF

AT2G24960.2 unknown protein9.4e-0425.84Show/hide
Query:  GFGWNDEKKCIVAEKEVFDDWVKSHPAAKGLLNKSFVHYDELSYVF------GKDRATGGRAESFADIGSNDPPGYDAFAADAVPDTDF
        GF W++ +  I A+  V+D ++K HP A+    KS   Y++L  +F      G D    G A   ++  ++     D       P  D+
Subjt:  GFGWNDEKKCIVAEKEVFDDWVKSHPAAKGLLNKSFVHYDELSYVF------GKDRATGGRAESFADIGSNDPPGYDAFAADAVPDTDF

AT4G02210.1 unknown protein5.5e-0429.51Show/hide
Query:  GFGWNDEKKCIVAEKEVFDDWVKSHPAAKGLLNKSFVHYDELSYVFGKDRATGGRAESFAD
        GF W+D ++ +VA+  V+D+++K HP ++    KS   Y +L  V+    +     ES ++
Subjt:  GFGWNDEKKCIVAEKEVFDDWVKSHPAAKGLLNKSFVHYDELSYVFGKDRATGGRAESFAD

AT4G02210.2 unknown protein5.5e-0429.51Show/hide
Query:  GFGWNDEKKCIVAEKEVFDDWVKSHPAAKGLLNKSFVHYDELSYVFGKDRATGGRAESFAD
        GF W+D ++ +VA+  V+D+++K HP ++    KS   Y +L  V+    +     ES ++
Subjt:  GFGWNDEKKCIVAEKEVFDDWVKSHPAAKGLLNKSFVHYDELSYVFGKDRATGGRAESFAD


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCGTGGCCCAAACTGTAGTGGTTTTGGGTGGAATGATGAAAAAAAATGCATCGTCGCAGAGAAAGAAGTCTTTGACGATTGGGTAAAGAGTCATCCGGCGGCGAAAGG
CCTCCTTAATAAGTCGTTTGTCCACTATGACGAACTGTCGTACGTGTTTGGTAAAGATCGTGCAACAGGAGGTCGGGCTGAGAGTTTTGCGGACATTGGGTCAAACGATC
CTCCTGGGTATGACGCATTTGCTGCTGATGCTGTGCCAGATACGGACTTTCCGCCAATGTACAGTCCGGGATTGAACATGTCGCCTGATGATTTGATGGAAACAAGAACC
GCTAGGGTCAGTGAACGTAGAAATGCCATCCCTGAGCTCACATTGATGGATAGGTGTCGCTTAATGCGTATACTTATGCGTAACGTCGATGACATGAAAGCTTTCCTTGA
AGTTCCCGACAATATGAAGTACCCGTACTGCAGCATCATTCTTCAAGAAAATCGATGA
mRNA sequenceShow/hide mRNA sequence
ATGCGTGGCCCAAACTGTAGTGGTTTTGGGTGGAATGATGAAAAAAAATGCATCGTCGCAGAGAAAGAAGTCTTTGACGATTGGGTAAAGAGTCATCCGGCGGCGAAAGG
CCTCCTTAATAAGTCGTTTGTCCACTATGACGAACTGTCGTACGTGTTTGGTAAAGATCGTGCAACAGGAGGTCGGGCTGAGAGTTTTGCGGACATTGGGTCAAACGATC
CTCCTGGGTATGACGCATTTGCTGCTGATGCTGTGCCAGATACGGACTTTCCGCCAATGTACAGTCCGGGATTGAACATGTCGCCTGATGATTTGATGGAAACAAGAACC
GCTAGGGTCAGTGAACGTAGAAATGCCATCCCTGAGCTCACATTGATGGATAGGTGTCGCTTAATGCGTATACTTATGCGTAACGTCGATGACATGAAAGCTTTCCTTGA
AGTTCCCGACAATATGAAGTACCCGTACTGCAGCATCATTCTTCAAGAAAATCGATGA
Protein sequenceShow/hide protein sequence
MRGPNCSGFGWNDEKKCIVAEKEVFDDWVKSHPAAKGLLNKSFVHYDELSYVFGKDRATGGRAESFADIGSNDPPGYDAFAADAVPDTDFPPMYSPGLNMSPDDLMETRT
ARVSERRNAIPELTLMDRCRLMRILMRNVDDMKAFLEVPDNMKYPYCSIILQENR