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IVF0020752 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0020752
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionGag/pol protein
Genome locationchr11:18806740..18807870
RNA-Seq ExpressionIVF0020752
SyntenyIVF0020752
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
GO:0003824 - catalytic activity (molecular function)
GO:0046872 - metal ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0037172.1 putative nuclease HARBI1 [Cucumis melo var. makuwa]1.43e-3875.79Show/hide
Query:  MLSTCGESSFSVRNHWKCTCNEGNGLSSRTFGVRPKKTRARMPQTQFSRPRVKSGLPTVSSLCFVLVINFSIFNAYTLRTSSHTQAMLPDMFSLG
        ML T GE  F VRNHWKC C+EGNGLSSRT G RPKKTRARMP TQFSRP VKS  PTVSSLCFVL I+ SIF A TLRTS+HT  MLPD FS G
Subjt:  MLSTCGESSFSVRNHWKCTCNEGNGLSSRTFGVRPKKTRARMPQTQFSRPRVKSGLPTVSSLCFVLVINFSIFNAYTLRTSSHTQAMLPDMFSLG

KAA0061317.1 hypothetical protein E6C27_scaffold6213G00130 [Cucumis melo var. makuwa]8.79e-4454.22Show/hide
Query:  KRRLLLKTERGDSYSGLTRVDLESFDLRASYSKDFTHIPGMLPDMFYQGIGREASSLEEELRCDPERSKKLPMLSTCGESSFSVRNHWKCTCNEGNGLSS
        +RR  +  +R   +  +  + L  F+ R   +   TH  GMLP MF QGIGREASSLE EL  DP+R K+ PML+T GE    VRNHWKCTC+  N LSS
Subjt:  KRRLLLKTERGDSYSGLTRVDLESFDLRASYSKDFTHIPGMLPDMFYQGIGREASSLEEELRCDPERSKKLPMLSTCGESSFSVRNHWKCTCNEGNGLSS

Query:  RTFGVRPKKTRARMPQTQFSRPRVKSGLPTVSSLCFVLVINFSIFNAYTLRTSSHTQAMLPDMFSL
        RT GV P KTR RM +TQFSRPR KS  P VSSLC VLVI+ SIF A T RTS  T  +L + F +
Subjt:  RTFGVRPKKTRARMPQTQFSRPRVKSGLPTVSSLCFVLVINFSIFNAYTLRTSSHTQAMLPDMFSL

KAA0062888.1 non-LTR retroelement reverse transcriptase-like protein [Cucumis melo var. makuwa]8.52e-5936.17Show/hide
Query:  PDMFYQGIGREASSLEEELRCDPERSKKLPMLSTCGESSFSVRNHWKCTCNEGNGLSSRTFGVRPKKTRARMPQTQFSRPRVKSGLPTVSSLCFVLVINF
        PD+F+  + REASSLEEEL CD +RSK+ PM  T GE S  VRNHWKCTC+EGNGL+SRT G  PKKTRARMP++QFSR   KS  PTVSSLCFVLVIN 
Subjt:  PDMFYQGIGREASSLEEELRCDPERSKKLPMLSTCGESSFSVRNHWKCTCNEGNGLSSRTFGVRPKKTRARMPQTQFSRPRVKSGLPTVSSLCFVLVINF

Query:  SIFNAYTLRTSSHTQAMLPDMFSLGIGREAFS--------------------------------------------------------------------
        SIF A T RTS+HT  MLPDMFS GIG+EA S                                                                    
Subjt:  SIFNAYTLRTSSHTQAMLPDMFSLGIGREAFS--------------------------------------------------------------------

Query:  ----------------------------------------------------------------------------------------------------
                                                                                                            
Subjt:  ----------------------------------------------------------------------------------------------------

Query:  -------RYRSG-----------------------SELIGGRTERRKQAELEDFWSSSQENASEKAPDSVFSSWGKKRSPNGFFPLLRIGHKSFDLRASY
               R+R+                        SE  G     +K+AEL+DFW SSQENA E   DSVFSSWGKK+SP+GFFPL RIGHKS D R SY
Subjt:  -------RYRSG-----------------------SELIGGRTERRKQAELEDFWSSSQENASEKAPDSVFSSWGKKRSPNGFFPLLRIGHKSFDLRASY

Query:  SEDFNPHSWHDP
        SEDFNP+SWH P
Subjt:  SEDFNPHSWHDP

TYK22521.1 uncharacterized protein E5676_scaffold387G00220 [Cucumis melo var. makuwa]1.90e-3952Show/hide
Query:  KKLPMLSTCGESSFSVRNHWKCTCNEGNGLSSRTFGVRPKKTRARMPQTQFSRPRVKSGLPTVSSLCFVLVINFSIFNAYTLRTSSHTQAMLPDMFSLGI
        ++ PML T GE S  VRN WKCTC EGNGLSSRT G RPKKTRARMPQTQFSRP  KS  PTVS+LC VLV + SIF A T RTS+HT  MLPD FS   
Subjt:  KKLPMLSTCGESSFSVRNHWKCTCNEGNGLSSRTFGVRPKKTRARMPQTQFSRPRVKSGLPTVSSLCFVLVINFSIFNAYTLRTSSHTQAMLPDMFSLGI

Query:  GREAFSRYRSGSELIGGRTERRKQAELEDFWSSSQENASEKAPDSVFSSWGKKRSPNGFFPLLRIGHKSFDLRAS
                                                + P   F   GK  SP+GFFPLLRIGHKS DLR S
Subjt:  GREAFSRYRSGSELIGGRTERRKQAELEDFWSSSQENASEKAPDSVFSSWGKKRSPNGFFPLLRIGHKSFDLRAS

TYK23424.1 gag/pol protein [Cucumis melo var. makuwa]1.25e-3948.96Show/hide
Query:  ASYSKDFTHIPGMLPDMFYQGIGREASSLEEELRCDPERSKKLPMLSTCGESSFSVRNHWKCTCNEGNGLSSRTFGVRPKKTRARMPQTQFSRPRV----
        A  S++ TH PGML DMF QGIGR+ASSL+ ELRCDP+RSK+ PML   GE S+ VRNHWK TCNE N LSSRTF VR K T+AR P+T    P +    
Subjt:  ASYSKDFTHIPGMLPDMFYQGIGREASSLEEELRCDPERSKKLPMLSTCGESSFSVRNHWKCTCNEGNGLSSRTFGVRPKKTRARMPQTQFSRPRV----

Query:  ------------------------------------------KSGLPTVSSLCFVLVINFSIFNAYTLRTSSHTQAMLPDMFSLGIGREAFS
                                                  K+   TVSSL F+LVI+  IF A+T RTS+HT  MLPDMFS GIGREA S
Subjt:  ------------------------------------------KSGLPTVSSLCFVLVINFSIFNAYTLRTSSHTQAMLPDMFSLGIGREAFS

TrEMBL top hitse value%identityAlignment
A0A5A7V368 Uncharacterized protein3.5e-3554.22Show/hide
Query:  KRRLLLKTERGDSYSGLTRVDLESFDLRASYSKDFTHIPGMLPDMFYQGIGREASSLEEELRCDPERSKKLPMLSTCGESSFSVRNHWKCTCNEGNGLSS
        +RR  +  +R   +  +  + L  F+ R    +  TH  GMLP MF QGIGREASSLE EL  DP+R K+ PML+T GE    VRNHWKCTC+  N LSS
Subjt:  KRRLLLKTERGDSYSGLTRVDLESFDLRASYSKDFTHIPGMLPDMFYQGIGREASSLEEELRCDPERSKKLPMLSTCGESSFSVRNHWKCTCNEGNGLSS

Query:  RTFGVRPKKTRARMPQTQFSRPRVKSGLPTVSSLCFVLVINFSIFNAYTLRTSSHTQAMLPDMFSL
        RT GV P KTR RM +TQFSRPR KS  P VSSLC VLVI+ SIF A T RTS  T  +L + F +
Subjt:  RTFGVRPKKTRARMPQTQFSRPRVKSGLPTVSSLCFVLVINFSIFNAYTLRTSSHTQAMLPDMFSL

A0A5A7V5J2 Non-LTR retroelement reverse transcriptase-like protein7.8e-5136.17Show/hide
Query:  PDMFYQGIGREASSLEEELRCDPERSKKLPMLSTCGESSFSVRNHWKCTCNEGNGLSSRTFGVRPKKTRARMPQTQFSRPRVKSGLPTVSSLCFVLVINF
        PD+F+  + REASSLEEEL CD +RSK+ PM  T GE S  VRNHWKCTC+EGNGL+SRT G  PKKTRARMP++QFSR   KS  PTVSSLCFVLVIN 
Subjt:  PDMFYQGIGREASSLEEELRCDPERSKKLPMLSTCGESSFSVRNHWKCTCNEGNGLSSRTFGVRPKKTRARMPQTQFSRPRVKSGLPTVSSLCFVLVINF

Query:  SIFNAYTLRTSSHTQAMLPDMFSLGIGREAFS--------------------------------------------------------------------
        SIF A T RTS+HT  MLPDMFS GIG+EA S                                                                    
Subjt:  SIFNAYTLRTSSHTQAMLPDMFSLGIGREAFS--------------------------------------------------------------------

Query:  ----------------------------------------------------------------------------------------------------
                                                                                                            
Subjt:  ----------------------------------------------------------------------------------------------------

Query:  -------RYRSG-----------------------SELIGGRTERRKQAELEDFWSSSQENASEKAPDSVFSSWGKKRSPNGFFPLLRIGHKSFDLRASY
               R+R+                        SE  G     +K+AEL+DFW SSQENA E   DSVFSSWGKK+SP+GFFPL RIGHKS D R SY
Subjt:  -------RYRSG-----------------------SELIGGRTERRKQAELEDFWSSSQENASEKAPDSVFSSWGKKRSPNGFFPLLRIGHKSFDLRASY

Query:  SEDFNPHSWHDP
        SEDFNP+SWH P
Subjt:  SEDFNPHSWHDP

A0A5D3CGX3 Uncharacterized protein1.1e-3141.91Show/hide
Query:  LRASYSKDFTHIPGMLPDMFYQGIGREASSLEEELRCDPERSKKLPMLSTCGESSFSVRNHWKCTCNEGNGLSSRTFGVRPKKTRARMPQTQFSRPRVKS
        L A   +   H P MLP  FY+GI  + SS E EL                               ++GNGL SRTF VRPKK RAR+P TQFS P VKS
Subjt:  LRASYSKDFTHIPGMLPDMFYQGIGREASSLEEELRCDPERSKKLPMLSTCGESSFSVRNHWKCTCNEGNGLSSRTFGVRPKKTRARMPQTQFSRPRVKS

Query:  GLPTVSSLCFVLVINFSIFNAYTLRTSSHTQAMLPDMFSLGIGREAFSRYRSGSELIGGRTERRKQAELEDFWSSSQ---------------ENASEKAP
          PT+SSL              +    S T+  L  +  LG   + +       + +    ++RK AELEDFW SSQ               ENASE A 
Subjt:  GLPTVSSLCFVLVINFSIFNAYTLRTSSHTQAMLPDMFSLGIGREAFSRYRSGSELIGGRTERRKQAELEDFWSSSQ---------------ENASEKAP

Query:  DSVFSSWGKKRSPNGFFPLLRIGHKSFDLRASYSEDFNPHS
        DSVFSS G+K+  + FFPLLRIGH+SFDLR SYSEDFNPHS
Subjt:  DSVFSSWGKKRSPNGFFPLLRIGHKSFDLRASYSEDFNPHS

A0A5D3DFP2 Uncharacterized protein1.9e-3352Show/hide
Query:  KKLPMLSTCGESSFSVRNHWKCTCNEGNGLSSRTFGVRPKKTRARMPQTQFSRPRVKSGLPTVSSLCFVLVINFSIFNAYTLRTSSHTQAMLPDMFSLGI
        ++ PML T GE S  VRN WKCTC EGNGLSSRT G RPKKTRARMPQTQFSRP  KS  PTVS+LC VLV + SIF A T RTS+HT  MLPD FS   
Subjt:  KKLPMLSTCGESSFSVRNHWKCTCNEGNGLSSRTFGVRPKKTRARMPQTQFSRPRVKSGLPTVSSLCFVLVINFSIFNAYTLRTSSHTQAMLPDMFSLGI

Query:  GREAFSRYRSGSELIGGRTERRKQAELEDFWSSSQENASEKAPDSVFSSWGKKRSPNGFFPLLRIGHKSFDLRAS
                                                + P   F   GK  SP+GFFPLLRIGHKS DLR S
Subjt:  GREAFSRYRSGSELIGGRTERRKQAELEDFWSSSQENASEKAPDSVFSSWGKKRSPNGFFPLLRIGHKSFDLRAS

A0A5D3DIF8 Gag/pol protein1.3e-3448.96Show/hide
Query:  ASYSKDFTHIPGMLPDMFYQGIGREASSLEEELRCDPERSKKLPMLSTCGESSFSVRNHWKCTCNEGNGLSSRTFGVRPKKTRARMPQTQFSRPRV----
        A  S++ TH PGML DMF QGIGR+ASSL+ ELRCDP+RSK+ PML   GE S+ VRNHWK TCNE N LSSRTF VR K T+AR P+T    P +    
Subjt:  ASYSKDFTHIPGMLPDMFYQGIGREASSLEEELRCDPERSKKLPMLSTCGESSFSVRNHWKCTCNEGNGLSSRTFGVRPKKTRARMPQTQFSRPRV----

Query:  ------------------------------------------KSGLPTVSSLCFVLVINFSIFNAYTLRTSSHTQAMLPDMFSLGIGREAFS
                                                  K+   TVSSL F+LVI+  IF A+T RTS+HT  MLPDMFS GIGREA S
Subjt:  ------------------------------------------KSGLPTVSSLCFVLVINFSIFNAYTLRTSSHTQAMLPDMFSLGIGREAFS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAATTACCGATTAGGATAGGATACCGAGATCGAAGAAAAGCCTCTGATAGAATGAAACGAAGGCTACTGCTGAAAACAGAAAGGGGTGACTCATACTCAGGTCTCAC
GAGGGTAGACCTAGAGTCTTTCGATCTTCGAGCCTCCTACTCCAAGGACTTCACCCACATTCCTGGCATGCTCCCTGACATGTTTTACCAAGGTATAGGTCGAGAAGCGA
GCTCGTTGGAGGAAGAACTAAGGTGCGACCCAGAACGGTCCAAAAAGTTGCCAATGCTTTCAACGTGTGGAGAAAGCTCGTTCAGTGTCAGAAACCACTGGAAATGCACT
TGCAACGAAGGAAATGGGCTGAGCTCGAGGACTTTTGGTGTTCGTCCAAAGAAAACGCGAGCGAGAATGCCCCAGACACAGTTTTCTCGTCCTAGGGTAAAAAGCGGTCT
CCCAACGGTTTCTTCCCTTTGCTTCGTATTAGTCATAAATTTTTCGATCTTCAACGCATATACTTTGAGGACTTCATCCCACACTCAGGCGATGCTTCCTGACATGTTTT
CTCTAGGTATAGGTCGGGAAGCGTTCTCTAGGTATAGGTCGGGAAGCGAACTCATTGGAGGGAGAACTGAGCGAAGGAAACAGGCTGAGCTTGAGGACTTCTGGTCTTCG
TCCCAAGAAAATGCGAGCGAGAAAGCGCCGGACTCAGTTTTCTCGTCCTGGGGTAAAAAGCGGTCTCCCAACGGTTTCTTCCCTTTGCTTCGTATTGGTCATAAGTCTTT
CGATCTTCGGGCCTCGTACTCCGAGGACTTCAACCCACACTCCTGGCATGATCCCTGA
mRNA sequenceShow/hide mRNA sequence
ATGGAATTACCGATTAGGATAGGATACCGAGATCGAAGAAAAGCCTCTGATAGAATGAAACGAAGGCTACTGCTGAAAACAGAAAGGGGTGACTCATACTCAGGTCTCAC
GAGGGTAGACCTAGAGTCTTTCGATCTTCGAGCCTCCTACTCCAAGGACTTCACCCACATTCCTGGCATGCTCCCTGACATGTTTTACCAAGGTATAGGTCGAGAAGCGA
GCTCGTTGGAGGAAGAACTAAGGTGCGACCCAGAACGGTCCAAAAAGTTGCCAATGCTTTCAACGTGTGGAGAAAGCTCGTTCAGTGTCAGAAACCACTGGAAATGCACT
TGCAACGAAGGAAATGGGCTGAGCTCGAGGACTTTTGGTGTTCGTCCAAAGAAAACGCGAGCGAGAATGCCCCAGACACAGTTTTCTCGTCCTAGGGTAAAAAGCGGTCT
CCCAACGGTTTCTTCCCTTTGCTTCGTATTAGTCATAAATTTTTCGATCTTCAACGCATATACTTTGAGGACTTCATCCCACACTCAGGCGATGCTTCCTGACATGTTTT
CTCTAGGTATAGGTCGGGAAGCGTTCTCTAGGTATAGGTCGGGAAGCGAACTCATTGGAGGGAGAACTGAGCGAAGGAAACAGGCTGAGCTTGAGGACTTCTGGTCTTCG
TCCCAAGAAAATGCGAGCGAGAAAGCGCCGGACTCAGTTTTCTCGTCCTGGGGTAAAAAGCGGTCTCCCAACGGTTTCTTCCCTTTGCTTCGTATTGGTCATAAGTCTTT
CGATCTTCGGGCCTCGTACTCCGAGGACTTCAACCCACACTCCTGGCATGATCCCTGA
Protein sequenceShow/hide protein sequence
MELPIRIGYRDRRKASDRMKRRLLLKTERGDSYSGLTRVDLESFDLRASYSKDFTHIPGMLPDMFYQGIGREASSLEEELRCDPERSKKLPMLSTCGESSFSVRNHWKCT
CNEGNGLSSRTFGVRPKKTRARMPQTQFSRPRVKSGLPTVSSLCFVLVINFSIFNAYTLRTSSHTQAMLPDMFSLGIGREAFSRYRSGSELIGGRTERRKQAELEDFWSS
SQENASEKAPDSVFSSWGKKRSPNGFFPLLRIGHKSFDLRASYSEDFNPHSWHDP