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IVF0020770 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0020770
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionArabinogalactan protein 22, putative
Genome locationchr05:25977681..25978316
RNA-Seq ExpressionIVF0020770
SyntenyIVF0020770
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsIPR009424 - Arabinogalactan protein 16/20/22/41


Homology Show/hide homology
GenBank top hitse value%identityAlignment
ESR64379.1 hypothetical protein CICLE_v10010340mg [Citrus clementina]6.19e-1857.14Show/hide
Query:  MSSLKLTAVPFVGFLFLIILQLAHGHSHDISPAEGPSNDGAAIDQGIAYVLLLLALAITYIIH
        M+S++L A+P +GF+F+ ILQL +  +   SPA  PS+DG AIDQGIAY+L++LALAITY++H
Subjt:  MSSLKLTAVPFVGFLFLIILQLAHGHSHDISPAEGPSNDGAAIDQGIAYVLLLLALAITYIIH

KAA0061559.1 putative Arabinogalactan protein 22 [Cucumis melo var. makuwa]5.91e-36100Show/hide
Query:  MSSLKLTAVPFVGFLFLIILQLAHGHSHDISPAEGPSNDGAAIDQGIAYVLLLLALAITYIIH
        MSSLKLTAVPFVGFLFLIILQLAHGHSHDISPAEGPSNDGAAIDQGIAYVLLLLALAITYIIH
Subjt:  MSSLKLTAVPFVGFLFLIILQLAHGHSHDISPAEGPSNDGAAIDQGIAYVLLLLALAITYIIH

KAF9662510.1 hypothetical protein SADUNF_Sadunf18G0060600 [Salix dunnii]4.35e-1860.94Show/hide
Query:  MSSLKLTAVPFVGFLFLIILQLAHGHSHDISPA-EGPSNDGAAIDQGIAYVLLLLALAITYIIH
        M+S++L A+P +GF+FL +L+   G     SPA EGPSNDG  IDQGIAYVLL+LALAITY++H
Subjt:  MSSLKLTAVPFVGFLFLIILQLAHGHSHDISPA-EGPSNDGAAIDQGIAYVLLLLALAITYIIH

KGN60622.1 hypothetical protein Csa_019490 [Cucumis sativus]1.15e-3392.06Show/hide
Query:  MSSLKLTAVPFVGFLFLIILQLAHGHSHDISPAEGPSNDGAAIDQGIAYVLLLLALAITYIIH
        MSSLKLTAVP VGFLFLI+LQLAHGHSHDISPA GPSNDGAAIDQGIAYVLLLLALA+TYI+H
Subjt:  MSSLKLTAVPFVGFLFLIILQLAHGHSHDISPAEGPSNDGAAIDQGIAYVLLLLALAITYIIH

RQP02858.1 hypothetical protein POPTR_018G078801 [Populus trichocarpa]1.80e-1961.9Show/hide
Query:  MSSLKLTAVPFVGFLFLIILQLAHGHSHDISPAEGPSNDGAAIDQGIAYVLLLLALAITYIIH
        MSS++L A+P +GF+FL +L+   G     SPAEGP+NDG  IDQGIAYVLL+LALAITY+ H
Subjt:  MSSLKLTAVPFVGFLFLIILQLAHGHSHDISPAEGPSNDGAAIDQGIAYVLLLLALAITYIIH

TrEMBL top hitse value%identityAlignment
A0A067E6Q0 Uncharacterized protein1.4e-1157.14Show/hide
Query:  MSSLKLTAVPFVGFLFLIILQLAHGHSHDISPAEGPSNDGAAIDQGIAYVLLLLALAITYIIH
        M+S++L A+P +GF+F+ ILQL +  +   SPA  PS+DG AIDQGIAY+L++LALAITY++H
Subjt:  MSSLKLTAVPFVGFLFLIILQLAHGHSHDISPAEGPSNDGAAIDQGIAYVLLLLALAITYIIH

A0A067KBQ4 Uncharacterized protein1.4e-1160.94Show/hide
Query:  MSSLKLTAVPFVGFLFLIILQLAHGHSHDISP-AEGPSNDGAAIDQGIAYVLLLLALAITYIIH
        MS + L A+P +GF+FL +LQL HG +   SP AEGPS+DG  IDQGIAYVL+L+ALA+TY+ H
Subjt:  MSSLKLTAVPFVGFLFLIILQLAHGHSHDISP-AEGPSNDGAAIDQGIAYVLLLLALAITYIIH

A0A0A0LIU0 Uncharacterized protein1.6e-2392.06Show/hide
Query:  MSSLKLTAVPFVGFLFLIILQLAHGHSHDISPAEGPSNDGAAIDQGIAYVLLLLALAITYIIH
        MSSLKLTAVP VGFLFLI+LQLAHGHSHDISPA GPSNDGAAIDQGIAYVLLLLALA+TYI+H
Subjt:  MSSLKLTAVPFVGFLFLIILQLAHGHSHDISPAEGPSNDGAAIDQGIAYVLLLLALAITYIIH

A0A3N7G6R6 Uncharacterized protein9.6e-1361.9Show/hide
Query:  MSSLKLTAVPFVGFLFLIILQLAHGHSHDISPAEGPSNDGAAIDQGIAYVLLLLALAITYIIH
        MSS++L A+P +GF+FL +L+   G     SPAEGP+NDG  IDQGIAYVLL+LALAITY+ H
Subjt:  MSSLKLTAVPFVGFLFLIILQLAHGHSHDISPAEGPSNDGAAIDQGIAYVLLLLALAITYIIH

A0A5A7V7C0 Putative Arabinogalactan protein 222.9e-25100Show/hide
Query:  MSSLKLTAVPFVGFLFLIILQLAHGHSHDISPAEGPSNDGAAIDQGIAYVLLLLALAITYIIH
        MSSLKLTAVPFVGFLFLIILQLAHGHSHDISPAEGPSNDGAAIDQGIAYVLLLLALAITYIIH
Subjt:  MSSLKLTAVPFVGFLFLIILQLAHGHSHDISPAEGPSNDGAAIDQGIAYVLLLLALAITYIIH

SwissProt top hitse value%identityAlignment
O82337 Arabinogalactan protein 162.0e-0746.55Show/hide
Query:  LTAVPFVGFLFLIILQLAHGHSHDISPAEGPSNDGAAIDQGIAYVLLLLALAITYIIH
        +T      F+F +IL LA   S  ++PA  P++DG +IDQGIAY+L+++AL +TY+IH
Subjt:  LTAVPFVGFLFLIILQLAHGHSHDISPAEGPSNDGAAIDQGIAYVLLLLALAITYIIH

Q8L9T8 Arabinogalactan protein 415.2e-0853.85Show/hide
Query:  VGFLFLIILQLAHGHSHDISPAEGPSNDGAAIDQGIAYVLLLLALAITYIIH
        V  +F I+L +AH  S   +PA  P++DG  IDQGIAYVL+L+AL +TY+IH
Subjt:  VGFLFLIILQLAHGHSHDISPAEGPSNDGAAIDQGIAYVLLLLALAITYIIH

Q9FK16 Arabinogalactan protein 224.7e-0947.62Show/hide
Query:  MSSLKLTAVPFVGFLFLIILQLAHGHSHDISPAEGPSNDGAAIDQGIAYVLLLLALAITYIIH
        M+SLK        F+ + ++ L    SH  SPA  P++DG +IDQGIAYVL+++ALA+TY IH
Subjt:  MSSLKLTAVPFVGFLFLIILQLAHGHSHDISPAEGPSNDGAAIDQGIAYVLLLLALAITYIIH

Q9M373 Arabinogalactan protein 204.9e-0641.38Show/hide
Query:  LTAVPFVGFLFLIILQLAHGHSHDISPAEGPSNDGAAIDQGIAYVLLLLALAITYIIH
        +  +    F+F +I   A   S  ++PA  P++DG +IDQGIAY+L+++AL +TY+IH
Subjt:  LTAVPFVGFLFLIILQLAHGHSHDISPAEGPSNDGAAIDQGIAYVLLLLALAITYIIH

Arabidopsis top hitse value%identityAlignment
AT2G46330.1 arabinogalactan protein 161.4e-0846.55Show/hide
Query:  LTAVPFVGFLFLIILQLAHGHSHDISPAEGPSNDGAAIDQGIAYVLLLLALAITYIIH
        +T      F+F +IL LA   S  ++PA  P++DG +IDQGIAY+L+++AL +TY+IH
Subjt:  LTAVPFVGFLFLIILQLAHGHSHDISPAEGPSNDGAAIDQGIAYVLLLLALAITYIIH

AT3G61640.1 arabinogalactan protein 203.5e-0741.38Show/hide
Query:  LTAVPFVGFLFLIILQLAHGHSHDISPAEGPSNDGAAIDQGIAYVLLLLALAITYIIH
        +  +    F+F +I   A   S  ++PA  P++DG +IDQGIAY+L+++AL +TY+IH
Subjt:  LTAVPFVGFLFLIILQLAHGHSHDISPAEGPSNDGAAIDQGIAYVLLLLALAITYIIH

AT5G24105.1 arabinogalactan protein 413.7e-0953.85Show/hide
Query:  VGFLFLIILQLAHGHSHDISPAEGPSNDGAAIDQGIAYVLLLLALAITYIIH
        V  +F I+L +AH  S   +PA  P++DG  IDQGIAYVL+L+AL +TY+IH
Subjt:  VGFLFLIILQLAHGHSHDISPAEGPSNDGAAIDQGIAYVLLLLALAITYIIH

AT5G53250.1 arabinogalactan protein 223.4e-1047.62Show/hide
Query:  MSSLKLTAVPFVGFLFLIILQLAHGHSHDISPAEGPSNDGAAIDQGIAYVLLLLALAITYIIH
        M+SLK        F+ + ++ L    SH  SPA  P++DG +IDQGIAYVL+++ALA+TY IH
Subjt:  MSSLKLTAVPFVGFLFLIILQLAHGHSHDISPAEGPSNDGAAIDQGIAYVLLLLALAITYIIH


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGTTCGTTGAAGCTCACTGCCGTTCCGTTCGTCGGATTCTTGTTCTTGATTATTCTTCAATTGGCTCACGGCCACTCCCACGATATTTCACCGGCGGAAGGTCCTTC
TAACGACGGAGCTGCAATTGACCAAGGGATTGCGTACGTTCTTCTTCTGCTTGCTCTCGCCATTACCTACATCATCCATTGA
mRNA sequenceShow/hide mRNA sequence
ATTCACCCCAATTCATTTCCCCATATAAATACCCTAATCTTCAAATCCACCATTCCAAACTTCAACTTCGATTTCAATAGAGGAGAAATATTTGATTTTCTAAATTTTCG
GCAATTTTTCTAGTCGATTCACAAAACATGAGTTCGTTGAAGCTCACTGCCGTTCCGTTCGTCGGATTCTTGTTCTTGATTATTCTTCAATTGGCTCACGGCCACTCCCA
CGATATTTCACCGGCGGAAGGTCCTTCTAACGACGGAGCTGCAATTGACCAAGGGATTGCGTACGTTCTTCTTCTGCTTGCTCTCGCCATTACCTACATCATCCATTGAC
AACTTTTGTATTAATCAAATGATTTTGGGTTCGATATGTAGTGTTTTTTTTTTTGTAGTTTTTTCTCCC
Protein sequenceShow/hide protein sequence
MSSLKLTAVPFVGFLFLIILQLAHGHSHDISPAEGPSNDGAAIDQGIAYVLLLLALAITYIIH