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IVF0020833 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0020833
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionDNA repair protein XRCC2 homolog isoform X3
Genome locationchr10:10100920..10101499
RNA-Seq ExpressionIVF0020833
SyntenyIVF0020833
Gene Ontology termsGO:0000724 - double-strand break repair via homologous recombination (biological process)
GO:0005657 - replication fork (cellular component)
GO:0033063 - Rad51B-Rad51C-Rad51D-XRCC2 complex (cellular component)
GO:0003677 - DNA binding (molecular function)
GO:0005524 - ATP binding (molecular function)
GO:0008094 - DNA-dependent ATPase activity (molecular function)
InterPro domainsIPR013632 - DNA recombination and repair protein Rad51-like, C-terminal
IPR020588 - DNA recombination and repair protein RecA-like, ATP-binding domain
IPR027417 - P-loop containing nucleoside triphosphate hydrolase
IPR030547 - DNA repair protein XRCC2


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7032399.1 DNA repair protein XRCC2-like protein [Cucurbita argyrosperma subsp. argyrosperma]1.19e-6883.46Show/hide
Query:  MELSQWIDGDESASEMLGRVLKERTSLVVPPLHRVPLRVGNVVELVGPSGSAKTQILIQAAVNCILPKEWNGIHYGGLGCSAVFIDLDCRLDITRLLQVL
        M L QWIDGDE+A+EML RVLKERTSL+VPPLHRVPL VGNVVELVGPSGSAKTQILIQAAVNCILPKEWNGI YGGL CS VFIDLDCRLDI+RL QVL
Subjt:  MELSQWIDGDESASEMLGRVLKERTSLVVPPLHRVPLRVGNVVELVGPSGSAKTQILIQAAVNCILPKEWNGIHYGGLGCSAVFIDLDCRLDITRLLQVL

Query:  KLRILEAISNGELFVPFSISKMLTSRL
        KLRILE   +GELFVPF+I  + TSRL
Subjt:  KLRILEAISNGELFVPFSISKMLTSRL

TYK14436.1 DNA repair protein XRCC2-like protein isoform X3 [Cucumis melo var. makuwa]3.76e-73100Show/hide
Query:  MELSQWIDGDESASEMLGRVLKERTSLVVPPLHRVPLRVGNVVELVGPSGSAKTQILIQAAVNCILPKEWNGIHYGGLGCSAVFIDLDCRLDITRLLQVL
        MELSQWIDGDESASEMLGRVLKERTSLVVPPLHRVPLRVGNVVELVGPSGSAKTQILIQAAVNCILPKEWNGIHYGGLGCSAVFIDLDCRLDITRLLQVL
Subjt:  MELSQWIDGDESASEMLGRVLKERTSLVVPPLHRVPLRVGNVVELVGPSGSAKTQILIQAAVNCILPKEWNGIHYGGLGCSAVFIDLDCRLDITRLLQVL

Query:  KLRILEAISNG
        KLRILEAISNG
Subjt:  KLRILEAISNG

XP_008456835.1 PREDICTED: DNA repair protein XRCC2 homolog isoform X1 [Cucumis melo]8.34e-7199.12Show/hide
Query:  MELSQWIDGDESASEMLGRVLKERTSLVVPPLHRVPLRVGNVVELVGPSGSAKTQILIQAAVNCILPKEWNGIHYGGLGCSAVFIDLDCRLDITRLLQVL
        MELSQWIDGDESASEMLGRVLKERTSLVVPPLHRVPLRVGNVVELVGPSGSAKTQILIQAAVNCILPKEWNGIHYGGLGCSAVFIDLDCRLDITRLLQVL
Subjt:  MELSQWIDGDESASEMLGRVLKERTSLVVPPLHRVPLRVGNVVELVGPSGSAKTQILIQAAVNCILPKEWNGIHYGGLGCSAVFIDLDCRLDITRLLQVL

Query:  KLRILEAISNGEL
        KLRILEAISNG L
Subjt:  KLRILEAISNGEL

XP_008456836.1 PREDICTED: DNA repair protein XRCC2 homolog isoform X2 [Cucumis melo]6.21e-7199.12Show/hide
Query:  MELSQWIDGDESASEMLGRVLKERTSLVVPPLHRVPLRVGNVVELVGPSGSAKTQILIQAAVNCILPKEWNGIHYGGLGCSAVFIDLDCRLDITRLLQVL
        MELSQWIDGDESASEMLGRVLKERTSLVVPPLHRVPLRVGNVVELVGPSGSAKTQILIQAAVNCILPKEWNGIHYGGLGCSAVFIDLDCRLDITRLLQVL
Subjt:  MELSQWIDGDESASEMLGRVLKERTSLVVPPLHRVPLRVGNVVELVGPSGSAKTQILIQAAVNCILPKEWNGIHYGGLGCSAVFIDLDCRLDITRLLQVL

Query:  KLRILEAISNGEL
        KLRILEAISNG L
Subjt:  KLRILEAISNGEL

XP_008456838.1 PREDICTED: DNA repair protein XRCC2 homolog isoform X3 [Cucumis melo]2.51e-7199.12Show/hide
Query:  MELSQWIDGDESASEMLGRVLKERTSLVVPPLHRVPLRVGNVVELVGPSGSAKTQILIQAAVNCILPKEWNGIHYGGLGCSAVFIDLDCRLDITRLLQVL
        MELSQWIDGDESASEMLGRVLKERTSLVVPPLHRVPLRVGNVVELVGPSGSAKTQILIQAAVNCILPKEWNGIHYGGLGCSAVFIDLDCRLDITRLLQVL
Subjt:  MELSQWIDGDESASEMLGRVLKERTSLVVPPLHRVPLRVGNVVELVGPSGSAKTQILIQAAVNCILPKEWNGIHYGGLGCSAVFIDLDCRLDITRLLQVL

Query:  KLRILEAISNGEL
        KLRILEAISNG L
Subjt:  KLRILEAISNGEL

TrEMBL top hitse value%identityAlignment
A0A0A0KMH0 RECA_2 domain-containing protein1.6e-5293.81Show/hide
Query:  MELSQWIDGDESASEMLGRVLKERTSLVVPPLHRVPLRVGNVVELVGPSGSAKTQILIQAAVNCILPKEWNGIHYGGLGCSAVFIDLDCRLDITRLLQVL
        M L QWIDGDESASEMLGRVLKERTSLVVPPLHRVPLRVGNVVELVGPSGSAKTQILIQAAVNCILPKEW+GIHYGGLGC AVFIDLDCRLDITRLLQVL
Subjt:  MELSQWIDGDESASEMLGRVLKERTSLVVPPLHRVPLRVGNVVELVGPSGSAKTQILIQAAVNCILPKEWNGIHYGGLGCSAVFIDLDCRLDITRLLQVL

Query:  KLRILEAISNGEL
        KLRI+EA SNG L
Subjt:  KLRILEAISNGEL

A0A1S3C3R7 DNA repair protein XRCC2 homolog isoform X18.8e-5699.12Show/hide
Query:  MELSQWIDGDESASEMLGRVLKERTSLVVPPLHRVPLRVGNVVELVGPSGSAKTQILIQAAVNCILPKEWNGIHYGGLGCSAVFIDLDCRLDITRLLQVL
        MELSQWIDGDESASEMLGRVLKERTSLVVPPLHRVPLRVGNVVELVGPSGSAKTQILIQAAVNCILPKEWNGIHYGGLGCSAVFIDLDCRLDITRLLQVL
Subjt:  MELSQWIDGDESASEMLGRVLKERTSLVVPPLHRVPLRVGNVVELVGPSGSAKTQILIQAAVNCILPKEWNGIHYGGLGCSAVFIDLDCRLDITRLLQVL

Query:  KLRILEAISNGEL
        KLRILEAISNG L
Subjt:  KLRILEAISNGEL

A0A1S3C456 DNA repair protein XRCC2 homolog isoform X38.8e-5699.12Show/hide
Query:  MELSQWIDGDESASEMLGRVLKERTSLVVPPLHRVPLRVGNVVELVGPSGSAKTQILIQAAVNCILPKEWNGIHYGGLGCSAVFIDLDCRLDITRLLQVL
        MELSQWIDGDESASEMLGRVLKERTSLVVPPLHRVPLRVGNVVELVGPSGSAKTQILIQAAVNCILPKEWNGIHYGGLGCSAVFIDLDCRLDITRLLQVL
Subjt:  MELSQWIDGDESASEMLGRVLKERTSLVVPPLHRVPLRVGNVVELVGPSGSAKTQILIQAAVNCILPKEWNGIHYGGLGCSAVFIDLDCRLDITRLLQVL

Query:  KLRILEAISNGEL
        KLRILEAISNG L
Subjt:  KLRILEAISNGEL

A0A1S3C491 DNA repair protein XRCC2 homolog isoform X28.8e-5699.12Show/hide
Query:  MELSQWIDGDESASEMLGRVLKERTSLVVPPLHRVPLRVGNVVELVGPSGSAKTQILIQAAVNCILPKEWNGIHYGGLGCSAVFIDLDCRLDITRLLQVL
        MELSQWIDGDESASEMLGRVLKERTSLVVPPLHRVPLRVGNVVELVGPSGSAKTQILIQAAVNCILPKEWNGIHYGGLGCSAVFIDLDCRLDITRLLQVL
Subjt:  MELSQWIDGDESASEMLGRVLKERTSLVVPPLHRVPLRVGNVVELVGPSGSAKTQILIQAAVNCILPKEWNGIHYGGLGCSAVFIDLDCRLDITRLLQVL

Query:  KLRILEAISNGEL
        KLRILEAISNG L
Subjt:  KLRILEAISNGEL

A0A5D3CVL4 DNA repair protein XRCC2-like protein isoform X32.6e-55100Show/hide
Query:  MELSQWIDGDESASEMLGRVLKERTSLVVPPLHRVPLRVGNVVELVGPSGSAKTQILIQAAVNCILPKEWNGIHYGGLGCSAVFIDLDCRLDITRLLQVL
        MELSQWIDGDESASEMLGRVLKERTSLVVPPLHRVPLRVGNVVELVGPSGSAKTQILIQAAVNCILPKEWNGIHYGGLGCSAVFIDLDCRLDITRLLQVL
Subjt:  MELSQWIDGDESASEMLGRVLKERTSLVVPPLHRVPLRVGNVVELVGPSGSAKTQILIQAAVNCILPKEWNGIHYGGLGCSAVFIDLDCRLDITRLLQVL

Query:  KLRILEAISNG
        KLRILEAISNG
Subjt:  KLRILEAISNG

SwissProt top hitse value%identityAlignment
O43543 DNA repair protein XRCC22.1e-0632.84Show/hide
Query:  ESASEMLGRVLKERTSL--VVPPL---HRVPLRVGNVVELVGPSGSAKTQILIQAAVNCILPKEWNGIHYGGLGCSAVFIDLDCRLDITRLLQVLKLRIL
        ES +E+L R L+ R+SL  + P L      P+  G+++E  GP G+ KT++L      CILPK       GGL    +FID D   D+ RL+ +L+ R+ 
Subjt:  ESASEMLGRVLKERTSL--VVPPL---HRVPLRVGNVVELVGPSGSAKTQILIQAAVNCILPKEWNGIHYGGLGCSAVFIDLDCRLDITRLLQVLKLRIL

Query:  EAISN------GELFVPFSISKMLTSRLYLTSFS
        ++         G  F+ +  S   ++ L LT +S
Subjt:  EAISN------GELFVPFSISKMLTSRLYLTSFS

Q682D3 DNA repair protein XRCC2 homolog3.0e-3766.07Show/hide
Query:  ELSQWIDGDESASEMLGRVLKERTSLVVPPLHRVPLRVGNVVELVGPSGSAKTQILIQAAVNCILPKEWNGIHYGGLGCSAVFIDLDCRLDITRLLQVLK
        E   WI GDE+A +ML RVLK+R  L++PPLHRVPLR GNVVE+ G S SAKTQILIQAA++CILPK WNGIHYGGLG   +F+DLDCR D+ RL Q+LK
Subjt:  ELSQWIDGDESASEMLGRVLKERTSLVVPPLHRVPLRVGNVVELVGPSGSAKTQILIQAAVNCILPKEWNGIHYGGLGCSAVFIDLDCRLDITRLLQVLK

Query:  LRILEA--ISNG
         R+L+A  + NG
Subjt:  LRILEA--ISNG

Q9CX47 DNA repair protein XRCC25.6e-0729.85Show/hide
Query:  ELSQWIDGDESASEMLGRVLKERTSLVVPPLHRVPLRVGNVVELVGPSGSAKTQILIQAAVNCILPKEWNGIHYGGLGCSAVFIDLDCRLDITRLLQVLK
        EL   ++G  S  E+   +  +  S    P+H      G++ E  GP G+ KT++L      CILPK       GGL    +FID D   D+ RL+ VL+
Subjt:  ELSQWIDGDESASEMLGRVLKERTSLVVPPLHRVPLRVGNVVELVGPSGSAKTQILIQAAVNCILPKEWNGIHYGGLGCSAVFIDLDCRLDITRLLQVLK

Query:  LRILEAISNGELFVPFSISKMLTSRLYLTSFSSA
         R+ ++             K+  +RL+L   SS+
Subjt:  LRILEAISNGELFVPFSISKMLTSRLYLTSFSSA

Arabidopsis top hitse value%identityAlignment
AT5G64520.1 homolog of X-ray repair cross complementing 2 (XRCC2)2.2e-3866.07Show/hide
Query:  ELSQWIDGDESASEMLGRVLKERTSLVVPPLHRVPLRVGNVVELVGPSGSAKTQILIQAAVNCILPKEWNGIHYGGLGCSAVFIDLDCRLDITRLLQVLK
        E   WI GDE+A +ML RVLK+R  L++PPLHRVPLR GNVVE+ G S SAKTQILIQAA++CILPK WNGIHYGGLG   +F+DLDCR D+ RL Q+LK
Subjt:  ELSQWIDGDESASEMLGRVLKERTSLVVPPLHRVPLRVGNVVELVGPSGSAKTQILIQAAVNCILPKEWNGIHYGGLGCSAVFIDLDCRLDITRLLQVLK

Query:  LRILEA--ISNG
         R+L+A  + NG
Subjt:  LRILEA--ISNG

AT5G64520.2 homolog of X-ray repair cross complementing 2 (XRCC2)2.2e-3866.07Show/hide
Query:  ELSQWIDGDESASEMLGRVLKERTSLVVPPLHRVPLRVGNVVELVGPSGSAKTQILIQAAVNCILPKEWNGIHYGGLGCSAVFIDLDCRLDITRLLQVLK
        E   WI GDE+A +ML RVLK+R  L++PPLHRVPLR GNVVE+ G S SAKTQILIQAA++CILPK WNGIHYGGLG   +F+DLDCR D+ RL Q+LK
Subjt:  ELSQWIDGDESASEMLGRVLKERTSLVVPPLHRVPLRVGNVVELVGPSGSAKTQILIQAAVNCILPKEWNGIHYGGLGCSAVFIDLDCRLDITRLLQVLK

Query:  LRILEA--ISNG
         R+L+A  + NG
Subjt:  LRILEA--ISNG

AT5G64520.3 homolog of X-ray repair cross complementing 2 (XRCC2)2.2e-3866.07Show/hide
Query:  ELSQWIDGDESASEMLGRVLKERTSLVVPPLHRVPLRVGNVVELVGPSGSAKTQILIQAAVNCILPKEWNGIHYGGLGCSAVFIDLDCRLDITRLLQVLK
        E   WI GDE+A +ML RVLK+R  L++PPLHRVPLR GNVVE+ G S SAKTQILIQAA++CILPK WNGIHYGGLG   +F+DLDCR D+ RL Q+LK
Subjt:  ELSQWIDGDESASEMLGRVLKERTSLVVPPLHRVPLRVGNVVELVGPSGSAKTQILIQAAVNCILPKEWNGIHYGGLGCSAVFIDLDCRLDITRLLQVLK

Query:  LRILEA--ISNG
         R+L+A  + NG
Subjt:  LRILEA--ISNG


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGCTCAGCCAGTGGATAGACGGCGATGAGAGCGCCTCGGAGATGCTTGGAAGAGTTCTCAAAGAGCGAACCTCCTTGGTTGTTCCGCCTCTCCACAGAGTTCCTCT
CCGTGTTGGCAATGTGGTCGAACTTGTTGGACCTTCTGGTTCTGCCAAAACACAGATCTTAATCCAGGCTGCAGTTAATTGCATTCTTCCCAAGGAGTGGAATGGGATCC
ACTACGGAGGCTTGGGATGCTCTGCGGTGTTCATTGACTTGGATTGTCGTCTTGACATCACAAGGCTGCTCCAAGTTCTGAAGCTCCGAATTTTGGAAGCCATTAGCAAT
GGTGAGCTATTCGTGCCATTTAGTATTAGTAAAATGTTAACTTCAAGGTTATATTTGACGAGCTTCAGTTCTGCTTAA
mRNA sequenceShow/hide mRNA sequence
ATGGAGCTCAGCCAGTGGATAGACGGCGATGAGAGCGCCTCGGAGATGCTTGGAAGAGTTCTCAAAGAGCGAACCTCCTTGGTTGTTCCGCCTCTCCACAGAGTTCCTCT
CCGTGTTGGCAATGTGGTCGAACTTGTTGGACCTTCTGGTTCTGCCAAAACACAGATCTTAATCCAGGCTGCAGTTAATTGCATTCTTCCCAAGGAGTGGAATGGGATCC
ACTACGGAGGCTTGGGATGCTCTGCGGTGTTCATTGACTTGGATTGTCGTCTTGACATCACAAGGCTGCTCCAAGTTCTGAAGCTCCGAATTTTGGAAGCCATTAGCAAT
GGTGAGCTATTCGTGCCATTTAGTATTAGTAAAATGTTAACTTCAAGGTTATATTTGACGAGCTTCAGTTCTGCTTAA
Protein sequenceShow/hide protein sequence
MELSQWIDGDESASEMLGRVLKERTSLVVPPLHRVPLRVGNVVELVGPSGSAKTQILIQAAVNCILPKEWNGIHYGGLGCSAVFIDLDCRLDITRLLQVLKLRILEAISN
GELFVPFSISKMLTSRLYLTSFSSA