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IVF0020845 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0020845
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionRetrotransposon protein
Genome locationchr04:20963549..20964977
RNA-Seq ExpressionIVF0020845
SyntenyIVF0020845
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0054834.1 retrotransposon protein [Cucumis melo var. makuwa]5.68e-103100Show/hide
Query:  MAKSVWINAFVTDLEPVLQVEVKSRYPITMREAQLVKDRNLALKMALNELGGSGPSISEAQTQTMKDGRTNTKKKGGRQTEYPIRQISILVKGSYTRGEP
        MAKSVWINAFVTDLEPVLQVEVKSRYPITMREAQLVKDRNLALKMALNELGGSGPSISEAQTQTMKDGRTNTKKKGGRQTEYPIRQISILVKGSYTRGEP
Subjt:  MAKSVWINAFVTDLEPVLQVEVKSRYPITMREAQLVKDRNLALKMALNELGGSGPSISEAQTQTMKDGRTNTKKKGGRQTEYPIRQISILVKGSYTRGEP

Query:  PVRFLSDNEFKERLDKGLCFGCNDKYSHGHICKIKENRYTTTIKNYYS
        PVRFLSDNEFKERLDKGLCFGCNDKYSHGHICKIKENRYTTTIKNYYS
Subjt:  PVRFLSDNEFKERLDKGLCFGCNDKYSHGHICKIKENRYTTTIKNYYS

KAA0061430.1 retrotransposon protein [Cucumis melo var. makuwa]2.23e-5767.83Show/hide
Query:  MAKSVWINAFVTDLEPVLQVEVKSRYPIT----MREAQLVKDRNLALKMALNELGGSGPSISEAQTQTMKDGR-TNTKKKGGRQTEYPIRQISILVKGSY
        MAKSV ++AFVT+LEP LQ EVKS+ P T    MREAQLV DRNLALK+ALNE+G  GP  SEAQTQ M+DG+  N++KK GR+TEY IR+ISI +KG+Y
Subjt:  MAKSVWINAFVTDLEPVLQVEVKSRYPIT----MREAQLVKDRNLALKMALNELGGSGPSISEAQTQTMKDGR-TNTKKKGGRQTEYPIRQISILVKGSY

Query:  TRGEPPVRFLSDNEFKERLDKGLCFGCNDKYSHGHICKIKENR
        TRGEPPVR  S +EF+ RLDKGLCF C+++YS GH CKIKENR
Subjt:  TRGEPPVRFLSDNEFKERLDKGLCFGCNDKYSHGHICKIKENR

KAA0061436.1 retrotransposon protein [Cucumis melo var. makuwa]5.87e-4355.97Show/hide
Query:  YTDYVKRFLNYSTLLLKMAKSVWINAFVTDLEPVLQVEVKSRYPITMRE----AQLVKDRNLALKMALNELGGSGPSISEAQTQTMKDGRTNTKKKGGRQ
        Y DYVK+F+NYS  L  MA+SV  +AF+T LEP LQ EV SR+P  + E    AQLV DRNLALK+A  E+G   P  SEA +  +     N  K   R+
Subjt:  YTDYVKRFLNYSTLLLKMAKSVWINAFVTDLEPVLQVEVKSRYPITMRE----AQLVKDRNLALKMALNELGGSGPSISEAQTQTMKDGRTNTKKKGGRQ

Query:  TEYPIRQISILVKGSYTRGEPPVRFLSDNEFKERLDKGLCFGCNDKYSHGHICKIKENR
         E+ ++QI+I +KGSY +GEPPV+ LSD EF+ RLDKGLCF CN+KYSHGH CKIKE R
Subjt:  TEYPIRQISILVKGSYTRGEPPVRFLSDNEFKERLDKGLCFGCNDKYSHGHICKIKENR

KAA0063363.1 retrotransposon protein [Cucumis melo var. makuwa]8.33e-4556.6Show/hide
Query:  YTDYVKRFLNYSTLLLKMAKSVWINAFVTDLEPVLQVEVKSRYPITMRE----AQLVKDRNLALKMALNELGGSGPSISEAQTQTMKDGRTNTKKKGGRQ
        Y DYVK+F+NYS  L  MA+SV  +AF+T LEP LQ EV SR+P T+ E    AQLV DRNLALK+A  E G   P  +EA T  +     N  K   R+
Subjt:  YTDYVKRFLNYSTLLLKMAKSVWINAFVTDLEPVLQVEVKSRYPITMRE----AQLVKDRNLALKMALNELGGSGPSISEAQTQTMKDGRTNTKKKGGRQ

Query:  TEYPIRQISILVKGSYTRGEPPVRFLSDNEFKERLDKGLCFGCNDKYSHGHICKIKENR
         E+ ++QI+I +KGSY +GEPPV+ LSD EF+ RLDKGLCF CN+KYSHGH CKIKE R
Subjt:  TEYPIRQISILVKGSYTRGEPPVRFLSDNEFKERLDKGLCFGCNDKYSHGHICKIKENR

TYK22652.1 retrotransposon protein [Cucumis melo var. makuwa]4.54e-4554.37Show/hide
Query:  MYTDYVKRFLNYSTLLLKMAKSVWINAFVTDLEPVLQVEVKSRYPIT----MREAQLVKDRNLALKMALNELGGSGPSISEAQTQTMKDGRTNTKKKGGR
        +Y DY+K+FL YS  L +MA+SV I+AF+T LE  LQ EV SR+P+T    MREAQ+V DR+ A+K+ALN+    GP+  EAQ Q  K      + K G+
Subjt:  MYTDYVKRFLNYSTLLLKMAKSVWINAFVTDLEPVLQVEVKSRYPIT----MREAQLVKDRNLALKMALNELGGSGPSISEAQTQTMKDGRTNTKKKGGR

Query:  QTEYPIRQISILVKGSYTRGEPPVRFLSDNEFKERLDKGLCFGCNDKYSHGHICKIKENR
        + E+ ++QISI +KG+Y +GEP V+ LSD+EF+ RLDKGLCF CNDKYS GH CK K NR
Subjt:  QTEYPIRQISILVKGSYTRGEPPVRFLSDNEFKERLDKGLCFGCNDKYSHGHICKIKENR

TrEMBL top hitse value%identityAlignment
A0A5A7UI53 Retrotransposon protein2.0e-78100Show/hide
Query:  MAKSVWINAFVTDLEPVLQVEVKSRYPITMREAQLVKDRNLALKMALNELGGSGPSISEAQTQTMKDGRTNTKKKGGRQTEYPIRQISILVKGSYTRGEP
        MAKSVWINAFVTDLEPVLQVEVKSRYPITMREAQLVKDRNLALKMALNELGGSGPSISEAQTQTMKDGRTNTKKKGGRQTEYPIRQISILVKGSYTRGEP
Subjt:  MAKSVWINAFVTDLEPVLQVEVKSRYPITMREAQLVKDRNLALKMALNELGGSGPSISEAQTQTMKDGRTNTKKKGGRQTEYPIRQISILVKGSYTRGEP

Query:  PVRFLSDNEFKERLDKGLCFGCNDKYSHGHICKIKENRYTTTIKNYYS
        PVRFLSDNEFKERLDKGLCFGCNDKYSHGHICKIKENRYTTTIKNYYS
Subjt:  PVRFLSDNEFKERLDKGLCFGCNDKYSHGHICKIKENRYTTTIKNYYS

A0A5A7V4D8 Disease resistance protein6.6e-3752.17Show/hide
Query:  YTDYVKRFLNYSTLLLKMAKSVWINAFVTDLEPVLQVEVKSRYPIT----MREAQLVKDRNLALKMALNELGGSGPSISEAQTQTMKDGRTNTKKKGGRQ
        Y+DY+K+FL YS  L +MA+SV I+AFVT LE  LQ EVKSR+P+T    MREAQ+V DR+LA+ +AL++  G+GP +  AQ    K   TN + K G++
Subjt:  YTDYVKRFLNYSTLLLKMAKSVWINAFVTDLEPVLQVEVKSRYPIT----MREAQLVKDRNLALKMALNELGGSGPSISEAQTQTMKDGRTNTKKKGGRQ

Query:  TEYPIRQISILVKGSYTRGEP--PVRFLSDNEFKERLDKGLCFGCNDKYSHGHICKIKENR
         ++ ++Q+++ +KG++ + EP  PV+ LSD+EF+ RLDKGLCF CNDKYS GH CK K NR
Subjt:  TEYPIRQISILVKGSYTRGEP--PVRFLSDNEFKERLDKGLCFGCNDKYSHGHICKIKENR

A0A5D3DDB3 Retrotransposon protein5.6e-4467.83Show/hide
Query:  MAKSVWINAFVTDLEPVLQVEVKSRYPIT----MREAQLVKDRNLALKMALNELGGSGPSISEAQTQTMKDGR-TNTKKKGGRQTEYPIRQISILVKGSY
        MAKSV ++AFVT+LEP LQ EVKS+ P T    MREAQLV DRNLALK+ALNE+G  GP  SEAQTQ M+DG+  N++KK GR+TEY IR+ISI +KG+Y
Subjt:  MAKSVWINAFVTDLEPVLQVEVKSRYPIT----MREAQLVKDRNLALKMALNELGGSGPSISEAQTQTMKDGR-TNTKKKGGRQTEYPIRQISILVKGSY

Query:  TRGEPPVRFLSDNEFKERLDKGLCFGCNDKYSHGHICKIKENR
        TRGEPPVR  S +EF+ RLDKGLCF C+++YS GH CKIKENR
Subjt:  TRGEPPVRFLSDNEFKERLDKGLCFGCNDKYSHGHICKIKENR

A0A5D3DGC7 Retrotransposon protein1.3e-3754.37Show/hide
Query:  MYTDYVKRFLNYSTLLLKMAKSVWINAFVTDLEPVLQVEVKSRYPIT----MREAQLVKDRNLALKMALNELGGSGPSISEAQTQTMKDGRTNTKKKGGR
        +Y DY+K+FL YS  L +MA+SV I+AF+T LE  LQ EV SR+P+T    MREAQ+V DR+ A+K+ALN+    GP+  EAQ Q  K      + K G+
Subjt:  MYTDYVKRFLNYSTLLLKMAKSVWINAFVTDLEPVLQVEVKSRYPIT----MREAQLVKDRNLALKMALNELGGSGPSISEAQTQTMKDGRTNTKKKGGR

Query:  QTEYPIRQISILVKGSYTRGEPPVRFLSDNEFKERLDKGLCFGCNDKYSHGHICKIKENR
        + E+ ++QISI +KG+Y +GEP V+ LSD+EF+ RLDKGLCF CNDKYS GH CK K NR
Subjt:  QTEYPIRQISILVKGSYTRGEPPVRFLSDNEFKERLDKGLCFGCNDKYSHGHICKIKENR

A0A5D3DUJ0 Ty3/gypsy retrotransposon protein6.6e-3752.17Show/hide
Query:  YTDYVKRFLNYSTLLLKMAKSVWINAFVTDLEPVLQVEVKSRYPIT----MREAQLVKDRNLALKMALNELGGSGPSISEAQTQTMKDGRTNTKKKGGRQ
        Y+DY+K+FL YS  L +MA+SV I+AFVT LE  LQ EVKSR+P+T    MREAQ+V DR+LA+ +AL++  G+GP +  AQ    K   TN + K G++
Subjt:  YTDYVKRFLNYSTLLLKMAKSVWINAFVTDLEPVLQVEVKSRYPIT----MREAQLVKDRNLALKMALNELGGSGPSISEAQTQTMKDGRTNTKKKGGRQ

Query:  TEYPIRQISILVKGSYTRGEP--PVRFLSDNEFKERLDKGLCFGCNDKYSHGHICKIKENR
         ++ ++Q+++ +KG++ + EP  PV+ LSD+EF+ RLDKGLCF CNDKYS GH CK K NR
Subjt:  TEYPIRQISILVKGSYTRGEP--PVRFLSDNEFKERLDKGLCFGCNDKYSHGHICKIKENR

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTATACAGACTATGTGAAGAGATTTTTGAACTACTCCACACTTTTGCTGAAGATGGCAAAGAGTGTTTGGATAAATGCTTTCGTAACCGATTTAGAACCAGTGCTTCA
AGTAGAGGTGAAGAGCCGCTATCCCATAACTATGAGAGAGGCCCAATTAGTGAAGGATAGAAATTTGGCTCTCAAGATGGCCCTAAATGAGTTGGGTGGCAGTGGACCGA
GTATTTCAGAGGCTCAAACCCAAACTATGAAAGATGGAAGAACAAATACGAAAAAGAAAGGGGGAAGACAAACTGAGTACCCTATAAGGCAAATTTCGATTCTAGTCAAG
GGAAGTTATACAAGGGGTGAGCCGCCAGTAAGATTTTTGTCAGATAATGAGTTCAAGGAAAGATTGGACAAGGGGTTATGCTTTGGTTGTAATGATAAGTACTCCCATGG
GCACATATGCAAGATCAAGGAGAATCGTTACACTACAACAATTAAGAATTATTATTCTTGA
mRNA sequenceShow/hide mRNA sequence
ATTAGGTGACAACATAGCCAATGGGATAAATGGGGAGAATATCCGTTGAGGAACCCACCAGGGTGAATTGGAGTACTTAAATAATGTTTTGTGATTGCTGAAAATTAGGT
CACATTTTTTGGAAAAAGCTGTAGAATGCTTTTATGGGAGAAGAACTAGCCTTCTTAAAATTGCTGGGGGATCCTTTCTCTTTGATTTCCTTTATTATTTGTTGTTTGTT
TGCTGTATTTTTTTCTCTGTTCTTGAACAAGCATTGTGAAGACTATACTTAATTCCATTTCAATATATATTATCACATAGTACTGTCCCTGTTTTCTCTAGTCTTGTTGG
TGTTTTTTGAGTGGCAGGTAGAGGAGTCCTGACAAATTGGTATCAGAGCTGCCAAAGATCCTGAGAGGATACGAACAATAGCACATAAATAATTAAAGGCAAGGATGGAG
ATGAGTGAGAGAGAGATCATGGGTTTGAAACAAATGATACTCGGTCTAACTAAGAGTGGAAAAACTGTCCGACAAAGTGAAAGAAAGCAGTGTGACCAAGTGACCAGAGA
GAAGAATTGTGTGCGTCGGATGGGTTTGGGTTGAAACTAAAAGGTAAGGTGGAGGAAGTTGATGCGACTTCTAGCCTCGTTAAGGGTCCTCCTAATAGAAGCAAGTATAA
GAAGTTGGAAATGCCCGTATTTGCCGGTGTAAACTCAAAATCATGGATTTATAAGGCAGAACATTATTTTGAGATCAATGAGCTAATTGACACGGAGGTGTAGGTGGGTG
TCGTTAGTTTCGCCCAAGACGAAGTGGATTCATTTCGATGGAGCAACAATTGGAAGAAAATCACGTCGTGGGAAGACCTAAAGGGGAGGATGTTTGAACACTTTAAGGTC
CCTAGAGAAGGAAGCCTGAGCGCTTGCCTCATATGCTAGCAAGATGGAATGTATACAGACTATGTGAAGAGATTTTTGAACTACTCCACACTTTTGCTGAAGATGGCAAA
GAGTGTTTGGATAAATGCTTTCGTAACCGATTTAGAACCAGTGCTTCAAGTAGAGGTGAAGAGCCGCTATCCCATAACTATGAGAGAGGCCCAATTAGTGAAGGATAGAA
ATTTGGCTCTCAAGATGGCCCTAAATGAGTTGGGTGGCAGTGGACCGAGTATTTCAGAGGCTCAAACCCAAACTATGAAAGATGGAAGAACAAATACGAAAAAGAAAGGG
GGAAGACAAACTGAGTACCCTATAAGGCAAATTTCGATTCTAGTCAAGGGAAGTTATACAAGGGGTGAGCCGCCAGTAAGATTTTTGTCAGATAATGAGTTCAAGGAAAG
ATTGGACAAGGGGTTATGCTTTGGTTGTAATGATAAGTACTCCCATGGGCACATATGCAAGATCAAGGAGAATCGTTACACTACAACAATTAAGAATTATTATTCTTGA
Protein sequenceShow/hide protein sequence
MYTDYVKRFLNYSTLLLKMAKSVWINAFVTDLEPVLQVEVKSRYPITMREAQLVKDRNLALKMALNELGGSGPSISEAQTQTMKDGRTNTKKKGGRQTEYPIRQISILVK
GSYTRGEPPVRFLSDNEFKERLDKGLCFGCNDKYSHGHICKIKENRYTTTIKNYYS