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IVF0020857 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0020857
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionrRNA-processing protein FCF1 homolog
Genome locationchr04:27487987..27493078
RNA-Seq ExpressionIVF0020857
SyntenyIVF0020857
Gene Ontology termsGO:0006364 - rRNA processing (biological process)
GO:0005730 - nucleolus (cellular component)
GO:0032040 - small-subunit processome (cellular component)
InterPro domainsIPR002716 - PIN domain
IPR006984 - rRNA-processing protein Fcf1/Utp23
IPR029060 - PIN-like domain superfamily
IPR037503 - rRNA-processing protein Fcf1, PIN domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004136642.1 rRNA-processing protein FCF1 homolog [Cucumis sativus]7.26e-8495.24Show/hide
Query:  FHQFLHSNKLDLEKGMMDCLYAKCTPCITDCVMAELERLGQKYRVALRIAKDPRFERLPCTHKGTYADDCLVERVTQHKCYIVATCDRDLKRRIRKIPGV
        F  F   NKLDLEKGMMDCLYAKCTPCITDCVMAELERLGQKYRVALRIAKDPRFERLPCTHKGTYADDCLVERVTQHKCYIVATCDRDLKRRIRK+PGV
Subjt:  FHQFLHSNKLDLEKGMMDCLYAKCTPCITDCVMAELERLGQKYRVALRIAKDPRFERLPCTHKGTYADDCLVERVTQHKCYIVATCDRDLKRRIRKIPGV

Query:  PIMYITRHQYSIERLPEATIGGAPRM
        PIMYITRHQYSIERLPEATIGGAPRM
Subjt:  PIMYITRHQYSIERLPEATIGGAPRM

XP_008443271.1 PREDICTED: rRNA-processing protein FCF1 homolog [Cucumis melo]5.11e-8496.03Show/hide
Query:  FHQFLHSNKLDLEKGMMDCLYAKCTPCITDCVMAELERLGQKYRVALRIAKDPRFERLPCTHKGTYADDCLVERVTQHKCYIVATCDRDLKRRIRKIPGV
        F  F   NKLDLEKGMMDCLYAKCTPCITDCVMAELERLGQKYRVALRIAKDPRFERLPCTHKGTYADDCLVERVTQHKCYIVATCDRDLKRRIRKIPGV
Subjt:  FHQFLHSNKLDLEKGMMDCLYAKCTPCITDCVMAELERLGQKYRVALRIAKDPRFERLPCTHKGTYADDCLVERVTQHKCYIVATCDRDLKRRIRKIPGV

Query:  PIMYITRHQYSIERLPEATIGGAPRM
        PIMYITRHQYSIERLPEATIGGAPRM
Subjt:  PIMYITRHQYSIERLPEATIGGAPRM

XP_022158778.1 rRNA-processing protein FCF1 homolog [Momordica charantia]7.26e-8495.24Show/hide
Query:  FHQFLHSNKLDLEKGMMDCLYAKCTPCITDCVMAELERLGQKYRVALRIAKDPRFERLPCTHKGTYADDCLVERVTQHKCYIVATCDRDLKRRIRKIPGV
        F  F   NKLDLEKGMMDCLYAKCTPCITDCVMAELERLGQKYRVALRIAKDPRFERLPCTHKGTYADDCLVERVTQHKCYIVATCDRDLKRRIRK+PGV
Subjt:  FHQFLHSNKLDLEKGMMDCLYAKCTPCITDCVMAELERLGQKYRVALRIAKDPRFERLPCTHKGTYADDCLVERVTQHKCYIVATCDRDLKRRIRKIPGV

Query:  PIMYITRHQYSIERLPEATIGGAPRM
        PIMYITRHQYSIERLPEATIGGAPRM
Subjt:  PIMYITRHQYSIERLPEATIGGAPRM

XP_022935178.1 rRNA-processing protein FCF1 homolog [Cucurbita moschata]1.46e-8395.24Show/hide
Query:  FHQFLHSNKLDLEKGMMDCLYAKCTPCITDCVMAELERLGQKYRVALRIAKDPRFERLPCTHKGTYADDCLVERVTQHKCYIVATCDRDLKRRIRKIPGV
        F  F   NKLDLEKGMMDCLYAKCTPCITDCVMAELERLGQKYRVALRIAKDPRFERLPCTHKGTYADDCLVERVTQHKCYIVATCDRDLKRRIRKIPGV
Subjt:  FHQFLHSNKLDLEKGMMDCLYAKCTPCITDCVMAELERLGQKYRVALRIAKDPRFERLPCTHKGTYADDCLVERVTQHKCYIVATCDRDLKRRIRKIPGV

Query:  PIMYITRHQYSIERLPEATIGGAPRM
        PIMYITRHQYSIERLPEAT+GGAPRM
Subjt:  PIMYITRHQYSIERLPEATIGGAPRM

XP_038903189.1 rRNA-processing protein FCF1 homolog [Benincasa hispida]5.11e-8496.03Show/hide
Query:  FHQFLHSNKLDLEKGMMDCLYAKCTPCITDCVMAELERLGQKYRVALRIAKDPRFERLPCTHKGTYADDCLVERVTQHKCYIVATCDRDLKRRIRKIPGV
        F  F   NKLDLEKGMMDCLYAKCTPCITDCVMAELERLGQKYRVALRIAKDPRFERLPCTHKGTYADDCLVERVTQHKCYIVATCDRDLKRRIRKIPGV
Subjt:  FHQFLHSNKLDLEKGMMDCLYAKCTPCITDCVMAELERLGQKYRVALRIAKDPRFERLPCTHKGTYADDCLVERVTQHKCYIVATCDRDLKRRIRKIPGV

Query:  PIMYITRHQYSIERLPEATIGGAPRM
        PIMYITRHQYSIERLPEATIGGAPRM
Subjt:  PIMYITRHQYSIERLPEATIGGAPRM

TrEMBL top hitse value%identityAlignment
A0A0A0LEW8 PINc domain-containing protein4.0e-6595.24Show/hide
Query:  FHQFLHSNKLDLEKGMMDCLYAKCTPCITDCVMAELERLGQKYRVALRIAKDPRFERLPCTHKGTYADDCLVERVTQHKCYIVATCDRDLKRRIRKIPGV
        F  F   NKLDLEKGMMDCLYAKCTPCITDCVMAELERLGQKYRVALRIAKDPRFERLPCTHKGTYADDCLVERVTQHKCYIVATCDRDLKRRIRK+PGV
Subjt:  FHQFLHSNKLDLEKGMMDCLYAKCTPCITDCVMAELERLGQKYRVALRIAKDPRFERLPCTHKGTYADDCLVERVTQHKCYIVATCDRDLKRRIRKIPGV

Query:  PIMYITRHQYSIERLPEATIGGAPRM
        PIMYITRHQYSIERLPEATIGGAPRM
Subjt:  PIMYITRHQYSIERLPEATIGGAPRM

A0A1S3B8E3 rRNA-processing protein FCF1 homolog3.1e-6596.03Show/hide
Query:  FHQFLHSNKLDLEKGMMDCLYAKCTPCITDCVMAELERLGQKYRVALRIAKDPRFERLPCTHKGTYADDCLVERVTQHKCYIVATCDRDLKRRIRKIPGV
        F  F   NKLDLEKGMMDCLYAKCTPCITDCVMAELERLGQKYRVALRIAKDPRFERLPCTHKGTYADDCLVERVTQHKCYIVATCDRDLKRRIRKIPGV
Subjt:  FHQFLHSNKLDLEKGMMDCLYAKCTPCITDCVMAELERLGQKYRVALRIAKDPRFERLPCTHKGTYADDCLVERVTQHKCYIVATCDRDLKRRIRKIPGV

Query:  PIMYITRHQYSIERLPEATIGGAPRM
        PIMYITRHQYSIERLPEATIGGAPRM
Subjt:  PIMYITRHQYSIERLPEATIGGAPRM

A0A6J1DX25 rRNA-processing protein FCF1 homolog4.0e-6595.24Show/hide
Query:  FHQFLHSNKLDLEKGMMDCLYAKCTPCITDCVMAELERLGQKYRVALRIAKDPRFERLPCTHKGTYADDCLVERVTQHKCYIVATCDRDLKRRIRKIPGV
        F  F   NKLDLEKGMMDCLYAKCTPCITDCVMAELERLGQKYRVALRIAKDPRFERLPCTHKGTYADDCLVERVTQHKCYIVATCDRDLKRRIRK+PGV
Subjt:  FHQFLHSNKLDLEKGMMDCLYAKCTPCITDCVMAELERLGQKYRVALRIAKDPRFERLPCTHKGTYADDCLVERVTQHKCYIVATCDRDLKRRIRKIPGV

Query:  PIMYITRHQYSIERLPEATIGGAPRM
        PIMYITRHQYSIERLPEATIGGAPRM
Subjt:  PIMYITRHQYSIERLPEATIGGAPRM

A0A6J1F9T9 rRNA-processing protein FCF1 homolog6.9e-6595.24Show/hide
Query:  FHQFLHSNKLDLEKGMMDCLYAKCTPCITDCVMAELERLGQKYRVALRIAKDPRFERLPCTHKGTYADDCLVERVTQHKCYIVATCDRDLKRRIRKIPGV
        F  F   NKLDLEKGMMDCLYAKCTPCITDCVMAELERLGQKYRVALRIAKDPRFERLPCTHKGTYADDCLVERVTQHKCYIVATCDRDLKRRIRKIPGV
Subjt:  FHQFLHSNKLDLEKGMMDCLYAKCTPCITDCVMAELERLGQKYRVALRIAKDPRFERLPCTHKGTYADDCLVERVTQHKCYIVATCDRDLKRRIRKIPGV

Query:  PIMYITRHQYSIERLPEATIGGAPRM
        PIMYITRHQYSIERLPEAT+GGAPRM
Subjt:  PIMYITRHQYSIERLPEATIGGAPRM

A0A6J1J3K9 rRNA-processing protein FCF1 homolog6.9e-6595.24Show/hide
Query:  FHQFLHSNKLDLEKGMMDCLYAKCTPCITDCVMAELERLGQKYRVALRIAKDPRFERLPCTHKGTYADDCLVERVTQHKCYIVATCDRDLKRRIRKIPGV
        F  F   NKLDLEKGMMDCLYAKCTPCITDCVMAELERLGQKYRVALRIAKDPRFERLPCTHKGTYADDCLVERVTQHKCYIVATCDRDLKRRIRKIPGV
Subjt:  FHQFLHSNKLDLEKGMMDCLYAKCTPCITDCVMAELERLGQKYRVALRIAKDPRFERLPCTHKGTYADDCLVERVTQHKCYIVATCDRDLKRRIRKIPGV

Query:  PIMYITRHQYSIERLPEATIGGAPRM
        PIMYITRHQYSIERLPEAT+GGAPRM
Subjt:  PIMYITRHQYSIERLPEATIGGAPRM

SwissProt top hitse value%identityAlignment
O13610 rRNA-processing protein fcf12.5e-4367.83Show/hide
Query:  FHQFLHSNKLDLEKGMMDCLYAKCTPCITDCVMAELERLGQKYRVALRIAKDPRFERLPCTHKGTYADDCLVERVTQHKCYIVATCDRDLKRRIRKIPGV
        F  F    K+DL +G+M CLYAK  PCI+DCVMAELE+LG +YR+ALRIAKD RFERLPCTHKGTYADDC+V+RV QHKCY+VAT D++LK+RIRKIPG+
Subjt:  FHQFLHSNKLDLEKGMMDCLYAKCTPCITDCVMAELERLGQKYRVALRIAKDPRFERLPCTHKGTYADDCLVERVTQHKCYIVATCDRDLKRRIRKIPGV

Query:  PIMYITRHQYSIERL
        PI+ +  H+  +ERL
Subjt:  PIMYITRHQYSIERL

Q32PD0 rRNA-processing protein FCF1 homolog8.1e-5580.8Show/hide
Query:  FHQFLHSNKLDLEKGMMDCLYAKCTPCITDCVMAELERLGQKYRVALRIAKDPRFERLPCTHKGTYADDCLVERVTQHKCYIVATCDRDLKRRIRKIPGV
        F  F    KLDL + MMDCLYAKC PCITDCVMAE+E+LGQKYRVALRIAKDPRFERLPCTHKGTYADDCLV+RVTQHKCYIVAT DRDLKRRIRKIPGV
Subjt:  FHQFLHSNKLDLEKGMMDCLYAKCTPCITDCVMAELERLGQKYRVALRIAKDPRFERLPCTHKGTYADDCLVERVTQHKCYIVATCDRDLKRRIRKIPGV

Query:  PIMYITRHQYSIERLPEATIGGAPR
        PIMYI+ H+Y+IER+P+    GAPR
Subjt:  PIMYITRHQYSIERLPEATIGGAPR

Q5RFQ0 rRNA-processing protein FCF1 homolog8.1e-5580.8Show/hide
Query:  FHQFLHSNKLDLEKGMMDCLYAKCTPCITDCVMAELERLGQKYRVALRIAKDPRFERLPCTHKGTYADDCLVERVTQHKCYIVATCDRDLKRRIRKIPGV
        F  F    KLDL + MMDCLYAKC PCITDCVMAE+E+LGQKYRVALRIAKDPRFERLPCTHKGTYADDCLV+RVTQHKCYIVAT DRDLKRRIRKIPGV
Subjt:  FHQFLHSNKLDLEKGMMDCLYAKCTPCITDCVMAELERLGQKYRVALRIAKDPRFERLPCTHKGTYADDCLVERVTQHKCYIVATCDRDLKRRIRKIPGV

Query:  PIMYITRHQYSIERLPEATIGGAPR
        PIMYI+ H+Y+IER+P+    GAPR
Subjt:  PIMYITRHQYSIERLPEATIGGAPR

Q9CTH6 rRNA-processing protein FCF1 homolog9.0e-5478.4Show/hide
Query:  FHQFLHSNKLDLEKGMMDCLYAKCTPCITDCVMAELERLGQKYRVALRIAKDPRFERLPCTHKGTYADDCLVERVTQHKCYIVATCDRDLKRRIRKIPGV
        F  F    KLDL + MMDCLYAKC PCITDCVMAE+E+LGQK+RVALRIAKDPRF+RLPCTHKGTYADDCLV+RVTQHKCYIVAT DRDLKRRIRKIPGV
Subjt:  FHQFLHSNKLDLEKGMMDCLYAKCTPCITDCVMAELERLGQKYRVALRIAKDPRFERLPCTHKGTYADDCLVERVTQHKCYIVATCDRDLKRRIRKIPGV

Query:  PIMYITRHQYSIERLPEATIGGAPR
        PIMY++ H+Y+IER+P+    GAPR
Subjt:  PIMYITRHQYSIERLPEATIGGAPR

Q9Y324 rRNA-processing protein FCF1 homolog8.1e-5580.8Show/hide
Query:  FHQFLHSNKLDLEKGMMDCLYAKCTPCITDCVMAELERLGQKYRVALRIAKDPRFERLPCTHKGTYADDCLVERVTQHKCYIVATCDRDLKRRIRKIPGV
        F  F    KLDL + MMDCLYAKC PCITDCVMAE+E+LGQKYRVALRIAKDPRFERLPCTHKGTYADDCLV+RVTQHKCYIVAT DRDLKRRIRKIPGV
Subjt:  FHQFLHSNKLDLEKGMMDCLYAKCTPCITDCVMAELERLGQKYRVALRIAKDPRFERLPCTHKGTYADDCLVERVTQHKCYIVATCDRDLKRRIRKIPGV

Query:  PIMYITRHQYSIERLPEATIGGAPR
        PIMYI+ H+Y+IER+P+    GAPR
Subjt:  PIMYITRHQYSIERLPEATIGGAPR

Arabidopsis top hitse value%identityAlignment
AT1G26530.1 PIN domain-like family protein1.1e-3864Show/hide
Query:  FHQFLHSNKLDLEKGMMDCLYAKCTPCITDCVMAELERLGQKYRVALRIAKDPRFERLPCTHKGTYADDCLVERVTQHKCYIVATCDRDLKRRIRKIPGV
        F  F   NK+DLEKGM                M  + ++   Y     IAKDPRFERLPC  KGTYADDCLV+RVTQHKC+IVATCDRDLKRRIRKIPGV
Subjt:  FHQFLHSNKLDLEKGMMDCLYAKCTPCITDCVMAELERLGQKYRVALRIAKDPRFERLPCTHKGTYADDCLVERVTQHKCYIVATCDRDLKRRIRKIPGV

Query:  PIMYITRHQYSIERLPEATIGGAPR
        PIMY+T+ +YSIE+LPEATIGGAPR
Subjt:  PIMYITRHQYSIERLPEATIGGAPR

AT2G34570.1 PIN domain-like family protein3.0e-0429.67Show/hide
Query:  TDCVMAELERLGQKYRVALRIAKDPRFERLPCTH-KGTYADDCLVERV----TQHKCYIVATCDRDLKRRIRKIPGVPIMYITRHQYSIER
        T CV+AELE+LG+ +  +L  A+        C H +   AD+CL E +    T+H  + + T D + +R++++   VP+++  R+   I++
Subjt:  TDCVMAELERLGQKYRVALRIAKDPRFERLPCTH-KGTYADDCLVERV----TQHKCYIVATCDRDLKRRIRKIPGVPIMYITRHQYSIER

AT2G46230.1 PIN domain-like family protein9.2e-6284.8Show/hide
Query:  FHQFLHSNKLDLEKGMMDCLYAKCTPCITDCVMAELERLGQKYRVALRIAKDPRFERLPCTHKGTYADDCLVERVTQHKCYIVATCDRDLKRRIRKIPGV
        F  F   NK+DLEKGM DCLYA CTPCITDCVMAELE+LGQKYRVALRIAKDP FERLPC HKGTYADDCLV+RVTQHKC+IVATCDRDLKRRIRKIPGV
Subjt:  FHQFLHSNKLDLEKGMMDCLYAKCTPCITDCVMAELERLGQKYRVALRIAKDPRFERLPCTHKGTYADDCLVERVTQHKCYIVATCDRDLKRRIRKIPGV

Query:  PIMYITRHQYSIERLPEATIGGAPR
        PIMY+T  +YSIE+LPEAT+GGAPR
Subjt:  PIMYITRHQYSIERLPEATIGGAPR

AT2G46230.2 PIN domain-like family protein1.9e-4685.57Show/hide
Query:  FHQFLHSNKLDLEKGMMDCLYAKCTPCITDCVMAELERLGQKYRVALRIAKDPRFERLPCTHKGTYADDCLVERVTQHKCYIVATCDRDLKRRIRKI
        F  F   NK+DLEKGM DCLYA CTPCITDCVMAELE+LGQKYRVALRIAKDP FERLPC HKGTYADDCLV+RVTQHKC+IVATCDRDLKRRIRK+
Subjt:  FHQFLHSNKLDLEKGMMDCLYAKCTPCITDCVMAELERLGQKYRVALRIAKDPRFERLPCTHKGTYADDCLVERVTQHKCYIVATCDRDLKRRIRKI


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTCCAAATGTTCCTTCGGCACTTTTCTTCAAGCACAACACTGCATTGGGCCACCTTATCGGGTCTTGGTGGATACAAATTTCATCAATTTCTCCATTCAAACAAATT
GGACTTGGAGAAGGGAATGATGGACTGTCTATATGCTAAATGCACTCCTTGTATAACAGACTGCGTGATGGCTGAGCTTGAGCGATTAGGTCAGAAGTATCGTGTTGCTC
TTAGAATAGCTAAGGACCCACGATTTGAGAGACTACCCTGTACTCATAAAGGAACCTATGCTGACGATTGCCTTGTTGAAAGGGTGACTCAGCATAAGTGTTATATCGTT
GCTACTTGCGATAGAGATTTGAAGCGTAGGATTCGCAAGATTCCTGGCGTACCCATCATGTATATAACTCGGCATCAGTATTCGATTGAGCGGTTGCCTGAGGCAACAAT
TGGAGGAGCTCCAAGGATGTAA
mRNA sequenceShow/hide mRNA sequence
GACAAAACCCTAACCTCCATCATCGTCCTCTACTCTCACGTGCTCCACCACACGTCCTTCTTCTTCTTCACTCCGTCTCTTCCTCCCTTTCAGCAGCACATTGTCGCCGC
CCCCTCTCTCCCGTTCAGTGCTACTGCCGCCGTTTCCGTTGCCGTCTTTTCTCTGCTCGTGTCGTCCCAGCCTCTCTGGAACAGATAGTGAGCAAGTCCTCTTCTAAACT
TTAAAGCATTGAAATTGCACCCGAGTAAGCGAGAGAATTTAGACAGCCATTTGGTGGCACAACTTCAATTTTTTTTCTTTCAATCAACGAGATGGGGAGGGCCAAGAAAG
GACCCAAATTTGCAGTCATGAAGAAGCTGGTCACCTCTAAAGCCATTAAAAACTACAAGCAAGAGGTCTTGAATCCAAAAAGAAAAGATCTTACGAAAGAAAACCTTCCA
AGAAATGTTCCAAATGTTCCTTCGGCACTTTTCTTCAAGCACAACACTGCATTGGGCCACCTTATCGGGTCTTGGTGGATACAAATTTCATCAATTTCTCCATTCAAACA
AATTGGACTTGGAGAAGGGAATGATGGACTGTCTATATGCTAAATGCACTCCTTGTATAACAGACTGCGTGATGGCTGAGCTTGAGCGATTAGGTCAGAAGTATCGTGTT
GCTCTTAGAATAGCTAAGGACCCACGATTTGAGAGACTACCCTGTACTCATAAAGGAACCTATGCTGACGATTGCCTTGTTGAAAGGGTGACTCAGCATAAGTGTTATAT
CGTTGCTACTTGCGATAGAGATTTGAAGCGTAGGATTCGCAAGATTCCTGGCGTACCCATCATGTATATAACTCGGCATCAGTATTCGATTGAGCGGTTGCCTGAGGCAA
CAATTGGAGGAGCTCCAAGGATGTAATTGTGGGACTTCACAGTGATGGACAAAAAAAAAATTCTTGAAGAGGTTTTTCCCCTGACTTCCAACCAACCTTTCCCAAGAGAA
ATTAAATTAAAAGAAATATTAGTAGGCATTGGTATCATGTAAATTTCTTTTGGCTTTAGGATATATTTCTTTTTGTTGTCCCTCATTTCTACAATTATTTGATTTTCTTT
TTACGTCTAGTTTATGTACCCTCTAAAGAAGAAAAAAAAATGCTTCTCCCTACTTCTGGGTTGTTGAG
Protein sequenceShow/hide protein sequence
MFQMFLRHFSSSTTLHWATLSGLGGYKFHQFLHSNKLDLEKGMMDCLYAKCTPCITDCVMAELERLGQKYRVALRIAKDPRFERLPCTHKGTYADDCLVERVTQHKCYIV
ATCDRDLKRRIRKIPGVPIMYITRHQYSIERLPEATIGGAPRM