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IVF0020881 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0020881
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionLINE-1 retrotransposable element ORF2 protein
Genome locationchr11:27853044..27853460
RNA-Seq ExpressionIVF0020881
SyntenyIVF0020881
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0040037.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]2.76e-8692.03Show/hide
Query:  MKRLPNLCSRPSWCVMCKRNEEDRKHLFILCPFAKSIWRTISSHLSSNVNCLSPKELCFSMCSWNQKTKKNVILFNTYASALWNIWLERNARIFNGKEKT
        MKRLPNLCSRPSWCVMCKRN+EDR HLFILCP AKSIWR ISSHL+SNVNCLSPK+LC +MCSW QKTKKNVIL+NTYASALWNIWLERNARIFNGKEKT
Subjt:  MKRLPNLCSRPSWCVMCKRNEEDRKHLFILCPFAKSIWRTISSHLSSNVNCLSPKELCFSMCSWNQKTKKNVILFNTYASALWNIWLERNARIFNGKEKT

Query:  AAEIWEDIKALAGLWTSRSSLFSNYQASSIALNLNAFS
         AEIWEDIKALAGLWTSRSSLFSNYQASSIALNLNAFS
Subjt:  AAEIWEDIKALAGLWTSRSSLFSNYQASSIALNLNAFS

TYK02997.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]4.00e-97100Show/hide
Query:  MKRLPNLCSRPSWCVMCKRNEEDRKHLFILCPFAKSIWRTISSHLSSNVNCLSPKELCFSMCSWNQKTKKNVILFNTYASALWNIWLERNARIFNGKEKT
        MKRLPNLCSRPSWCVMCKRNEEDRKHLFILCPFAKSIWRTISSHLSSNVNCLSPKELCFSMCSWNQKTKKNVILFNTYASALWNIWLERNARIFNGKEKT
Subjt:  MKRLPNLCSRPSWCVMCKRNEEDRKHLFILCPFAKSIWRTISSHLSSNVNCLSPKELCFSMCSWNQKTKKNVILFNTYASALWNIWLERNARIFNGKEKT

Query:  AAEIWEDIKALAGLWTSRSSLFSNYQASSIALNLNAFS
        AAEIWEDIKALAGLWTSRSSLFSNYQASSIALNLNAFS
Subjt:  AAEIWEDIKALAGLWTSRSSLFSNYQASSIALNLNAFS

TYK13741.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]8.65e-9294.2Show/hide
Query:  MKRLPNLCSRPSWCVMCKRNEEDRKHLFILCPFAKSIWRTISSHLSSNVNCLSPKELCFSMCSWNQKTKKNVILFNTYASALWNIWLERNARIFNGKEKT
        MKRLPNLCSRPSWCVMCKRN+EDR HLFILCP AKSIWR+ISSHLSSNVNCLSPKELC +MCSW QKTKKNVILFNTYASALWNIWLERNARIFNGKEKT
Subjt:  MKRLPNLCSRPSWCVMCKRNEEDRKHLFILCPFAKSIWRTISSHLSSNVNCLSPKELCFSMCSWNQKTKKNVILFNTYASALWNIWLERNARIFNGKEKT

Query:  AAEIWEDIKALAGLWTSRSSLFSNYQASSIALNLNAFS
         AEIWEDIKALAGLWTSRSSLFSNYQASSIALNLNAFS
Subjt:  AAEIWEDIKALAGLWTSRSSLFSNYQASSIALNLNAFS

TYK14764.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]4.99e-9193.48Show/hide
Query:  MKRLPNLCSRPSWCVMCKRNEEDRKHLFILCPFAKSIWRTISSHLSSNVNCLSPKELCFSMCSWNQKTKKNVILFNTYASALWNIWLERNARIFNGKEKT
        MKRLP LCSRPSWCVMCKRN+EDR HLFILCP AKSIWRTISSHL+SNVNCLSPKELC +MCSW QKTKKNVILFNTYASALWNIWLERNARIFNGKEKT
Subjt:  MKRLPNLCSRPSWCVMCKRNEEDRKHLFILCPFAKSIWRTISSHLSSNVNCLSPKELCFSMCSWNQKTKKNVILFNTYASALWNIWLERNARIFNGKEKT

Query:  AAEIWEDIKALAGLWTSRSSLFSNYQASSIALNLNAFS
         AEIWEDIKALAGLWTSRSSLFSNYQASSIALNLNAFS
Subjt:  AAEIWEDIKALAGLWTSRSSLFSNYQASSIALNLNAFS

XP_016902461.1 PREDICTED: LINE-1 retrotransposable element ORF2 protein [Cucumis melo]6.63e-8494.2Show/hide
Query:  MKRLPNLCSRPSWCVMCKRNEEDRKHLFILCPFAKSIWRTISSHLSSNVNCLSPKELCFSMCSWNQKTKKNVILFNTYASALWNIWLERNARIFNGKEKT
        MKRLPNLCSRPSWCVMCKRN+EDR HLFILCP AKSIWR+ISSHLSSNVNCLSPKELC +MCSW QKTKKNVILFNTYASALWNIWLERNARIFNGKEKT
Subjt:  MKRLPNLCSRPSWCVMCKRNEEDRKHLFILCPFAKSIWRTISSHLSSNVNCLSPKELCFSMCSWNQKTKKNVILFNTYASALWNIWLERNARIFNGKEKT

Query:  AAEIWEDIKALAGLWTSRSSLFSNYQASSIALNLNAFS
         AEIWEDIKALAGLWTSRSSLFSNYQASSIALNLNAFS
Subjt:  AAEIWEDIKALAGLWTSRSSLFSNYQASSIALNLNAFS

TrEMBL top hitse value%identityAlignment
A0A1S4E2K5 LINE-1 retrotransposable element ORF2 protein9.9e-7194.2Show/hide
Query:  MKRLPNLCSRPSWCVMCKRNEEDRKHLFILCPFAKSIWRTISSHLSSNVNCLSPKELCFSMCSWNQKTKKNVILFNTYASALWNIWLERNARIFNGKEKT
        MKRLPNLCSRPSWCVMCKRN+EDR HLFILCP AKSIWR+ISSHLSSNVNCLSPKELC +MCSW QKTKKNVILFNTYASALWNIWLERNARIFNGKEKT
Subjt:  MKRLPNLCSRPSWCVMCKRNEEDRKHLFILCPFAKSIWRTISSHLSSNVNCLSPKELCFSMCSWNQKTKKNVILFNTYASALWNIWLERNARIFNGKEKT

Query:  AAEIWEDIKALAGLWTSRSSLFSNYQASSIALNLNAFS
         AEIWEDIKALAGLWTSRSSLFSNYQASSIALNLNAFS
Subjt:  AAEIWEDIKALAGLWTSRSSLFSNYQASSIALNLNAFS

A0A5D3BU35 LINE-1 retrotransposable element ORF2 protein2.3e-75100Show/hide
Query:  MKRLPNLCSRPSWCVMCKRNEEDRKHLFILCPFAKSIWRTISSHLSSNVNCLSPKELCFSMCSWNQKTKKNVILFNTYASALWNIWLERNARIFNGKEKT
        MKRLPNLCSRPSWCVMCKRNEEDRKHLFILCPFAKSIWRTISSHLSSNVNCLSPKELCFSMCSWNQKTKKNVILFNTYASALWNIWLERNARIFNGKEKT
Subjt:  MKRLPNLCSRPSWCVMCKRNEEDRKHLFILCPFAKSIWRTISSHLSSNVNCLSPKELCFSMCSWNQKTKKNVILFNTYASALWNIWLERNARIFNGKEKT

Query:  AAEIWEDIKALAGLWTSRSSLFSNYQASSIALNLNAFS
        AAEIWEDIKALAGLWTSRSSLFSNYQASSIALNLNAFS
Subjt:  AAEIWEDIKALAGLWTSRSSLFSNYQASSIALNLNAFS

A0A5D3C4J1 LINE-1 retrotransposable element ORF2 protein3.8e-7093.48Show/hide
Query:  MKRLPNLCSRPSWCVMCKRNEEDRKHLFILCPFAKSIWRTISSHLSSNVNCLSPKELCFSMCSWNQKTKKNVILFNTYASALWNIWLERNARIFNGKEKT
        MKRLP LCSRPSWCVMCKRN+EDR HLFILCP AKSIWRTISSHL+SNVNCLSPKELC +MCSW QKTKKNVILFNTYASALWNIWLERNARIFNGKEKT
Subjt:  MKRLPNLCSRPSWCVMCKRNEEDRKHLFILCPFAKSIWRTISSHLSSNVNCLSPKELCFSMCSWNQKTKKNVILFNTYASALWNIWLERNARIFNGKEKT

Query:  AAEIWEDIKALAGLWTSRSSLFSNYQASSIALNLNAFS
         AEIWEDIKALAGLWTSRSSLFSNYQASSIALNLNAFS
Subjt:  AAEIWEDIKALAGLWTSRSSLFSNYQASSIALNLNAFS

A0A5D3CPL6 LINE-1 retrotransposable element ORF2 protein9.9e-7194.2Show/hide
Query:  MKRLPNLCSRPSWCVMCKRNEEDRKHLFILCPFAKSIWRTISSHLSSNVNCLSPKELCFSMCSWNQKTKKNVILFNTYASALWNIWLERNARIFNGKEKT
        MKRLPNLCSRPSWCVMCKRN+EDR HLFILCP AKSIWR+ISSHLSSNVNCLSPKELC +MCSW QKTKKNVILFNTYASALWNIWLERNARIFNGKEKT
Subjt:  MKRLPNLCSRPSWCVMCKRNEEDRKHLFILCPFAKSIWRTISSHLSSNVNCLSPKELCFSMCSWNQKTKKNVILFNTYASALWNIWLERNARIFNGKEKT

Query:  AAEIWEDIKALAGLWTSRSSLFSNYQASSIALNLNAFS
         AEIWEDIKALAGLWTSRSSLFSNYQASSIALNLNAFS
Subjt:  AAEIWEDIKALAGLWTSRSSLFSNYQASSIALNLNAFS

A0A5D3DM72 LINE-1 retrotransposable element ORF2 protein9.9e-7194.2Show/hide
Query:  MKRLPNLCSRPSWCVMCKRNEEDRKHLFILCPFAKSIWRTISSHLSSNVNCLSPKELCFSMCSWNQKTKKNVILFNTYASALWNIWLERNARIFNGKEKT
        MKRLPNLCSRPSWCVMCKRN+EDR HLFILCP AKSIWR+ISSHLSSNVNCLSPKELC +MCSW QKTKKNVILFNTYASALWNIWLERNARIFNGKEKT
Subjt:  MKRLPNLCSRPSWCVMCKRNEEDRKHLFILCPFAKSIWRTISSHLSSNVNCLSPKELCFSMCSWNQKTKKNVILFNTYASALWNIWLERNARIFNGKEKT

Query:  AAEIWEDIKALAGLWTSRSSLFSNYQASSIALNLNAFS
         AEIWEDIKALAGLWTSRSSLFSNYQASSIALNLNAFS
Subjt:  AAEIWEDIKALAGLWTSRSSLFSNYQASSIALNLNAFS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G33710.1 RNA-directed DNA polymerase (reverse transcriptase)-related family protein7.1e-0530.36Show/hide
Query:  MKRLPNLCSRPSW-------CVMCKRNEEDRKHLFILCPFAKSIWRTISSHLSSNVNCLSPKEL-CFSMCSWN-------QKTKKN--VILFNTYASALW
        + RLP      SW       C +C  + EDR HLF+ C FA  +W T+S  L          EL  FS   WN       Q+ +++   +      S L+
Subjt:  MKRLPNLCSRPSW-------CVMCKRNEEDRKHLFILCPFAKSIWRTISSHLSSNVNCLSPKEL-CFSMCSWN-------QKTKKN--VILFNTYASALW

Query:  NIWLERNARIFN
         IW +RN  + N
Subjt:  NIWLERNARIFN

AT1G45063.1 copper ion binding;electron carriers1.0e-0630.77Show/hide
Query:  PSWCVMCKRNEEDRKHLFILCPFAKSIWRTISSHLSSNVNCLSPKELCFSMCSW----NQKTKKNVILFNTYASALWNIWLERNARIFNGK
        PS C++C   +E R+H+F  CPF+  +W    S   SN   ++P  +      W     +  K   IL   Y +++++IW ERN R+ + K
Subjt:  PSWCVMCKRNEEDRKHLFILCPFAKSIWRTISSHLSSNVNCLSPKELCFSMCSW----NQKTKKNVILFNTYASALWNIWLERNARIFNGK

AT2G02520.1 RNA-directed DNA polymerase (reverse transcriptase)-related family protein5.3e-0831.43Show/hide
Query:  PSWCVMCKRNEEDRKHLFILCPFAKSIWRTISSHLSSNVNCLSPKELCFSMCSW--NQKTKKNV--ILFNTYASALWNIWLERNARIFNGKEKTAAEIWE
        P  C+ C  ++E R+HLF  C FA+ +W   +S +      + P  L      W  N    KNV  IL  ++ ++++ IW ERNAR+ +   + AA +  
Subjt:  PSWCVMCKRNEEDRKHLFILCPFAKSIWRTISSHLSSNVNCLSPKELCFSMCSW--NQKTKKNV--ILFNTYASALWNIWLERNARIFNGKEKTAAEIWE

Query:  DIKAL
        +IK++
Subjt:  DIKAL

AT4G05095.1 BEST Arabidopsis thaliana protein match is: RNA-directed DNA polymerase (reverse transcriptase)-related family protein (TAIR:AT4G04650.1)1.3e-0626.17Show/hide
Query:  SRPSWCVMCKRNEEDRKHLFILCPFAKSIWRTISSHLSSNVNCLSPKELCFSMCSW----NQKTKKNVILFNTYASALWNIWLERNARIFNGKEKTAAEI
        S PS CV+C  N E R+HLF  C  + ++W       S     L+P  L     +W    ++    ++I+   + ++++ +W ERN R+ +   +++  I
Subjt:  SRPSWCVMCKRNEEDRKHLFILCPFAKSIWRTISSHLSSNVNCLSPKELCFSMCSW----NQKTKKNVILFNTYASALWNIWLERNARIFNGKEKTAAEI

Query:  WEDIKAL
         ++IK +
Subjt:  WEDIKAL

AT5G18880.1 RNA-directed DNA polymerase (reverse transcriptase)-related family protein2.9e-0630.61Show/hide
Query:  PSWCVMCKRNEEDRKHLFILCPFAKSIWRTISSHLSSNVNCLSPKELCFSMCSW----NQKTKKNVILFNTYASALWNIWLERNARIFNGKEKTAAEI
        PS  V+C   +E   HLF  C F+ +IW   +S         SP     +  SW      ++    IL     SA++++W ERNARIF     +A+ +
Subjt:  PSWCVMCKRNEEDRKHLFILCPFAKSIWRTISSHLSSNVNCLSPKELCFSMCSW----NQKTKKNVILFNTYASALWNIWLERNARIFNGKEKTAAEI


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAGAGATTGCCAAATCTATGTTCTAGACCGAGCTGGTGTGTCATGTGTAAGAGGAATGAAGAAGACAGGAAACACCTCTTTATCCTATGCCCCTTTGCAAAGTCTAT
TTGGAGAACAATATCTTCACACTTAAGCAGCAATGTAAACTGCCTCAGTCCAAAGGAGCTTTGTTTTTCCATGTGCAGCTGGAATCAGAAAACAAAGAAAAATGTCATTC
TCTTTAACACCTATGCCTCTGCCCTTTGGAACATTTGGTTGGAAAGGAATGCCCGTATCTTCAATGGGAAAGAAAAAACAGCTGCAGAAATATGGGAAGATATAAAAGCT
CTTGCTGGACTATGGACTAGTAGATCTTCTCTCTTCTCAAATTATCAAGCTTCTTCCATAGCACTAAACCTTAATGCTTTTAGTTAG
mRNA sequenceShow/hide mRNA sequence
ATGAAGAGATTGCCAAATCTATGTTCTAGACCGAGCTGGTGTGTCATGTGTAAGAGGAATGAAGAAGACAGGAAACACCTCTTTATCCTATGCCCCTTTGCAAAGTCTAT
TTGGAGAACAATATCTTCACACTTAAGCAGCAATGTAAACTGCCTCAGTCCAAAGGAGCTTTGTTTTTCCATGTGCAGCTGGAATCAGAAAACAAAGAAAAATGTCATTC
TCTTTAACACCTATGCCTCTGCCCTTTGGAACATTTGGTTGGAAAGGAATGCCCGTATCTTCAATGGGAAAGAAAAAACAGCTGCAGAAATATGGGAAGATATAAAAGCT
CTTGCTGGACTATGGACTAGTAGATCTTCTCTCTTCTCAAATTATCAAGCTTCTTCCATAGCACTAAACCTTAATGCTTTTAGTTAG
Protein sequenceShow/hide protein sequence
MKRLPNLCSRPSWCVMCKRNEEDRKHLFILCPFAKSIWRTISSHLSSNVNCLSPKELCFSMCSWNQKTKKNVILFNTYASALWNIWLERNARIFNGKEKTAAEIWEDIKA
LAGLWTSRSSLFSNYQASSIALNLNAFS