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IVF0020886 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0020886
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionTy3-gypsy retrotransposon protein
Genome locationchr11:1570009..1570281
RNA-Seq ExpressionIVF0020886
SyntenyIVF0020886
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0005840 - ribosome (cellular component)
GO:0003723 - RNA binding (molecular function)
GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0045600.1 hypothetical protein E6C27_scaffold243G001060 [Cucumis melo var. makuwa]7.70e-2470.89Show/hide
Query:  MVSDVPTRREKLVNGEEDIRGLFCTVYGSSSVRFNSFATCLTANLTMVLEPLEVGLSIKGRRWSFDVSGNKLFLAAFDD
        MVSDVPTRRE LVNGEEDIR                      ANLTMVLEPLEVGLSIKGRRWSFDVSGNKLFLAAFDD
Subjt:  MVSDVPTRREKLVNGEEDIRGLFCTVYGSSSVRFNSFATCLTANLTMVLEPLEVGLSIKGRRWSFDVSGNKLFLAAFDD

KAA0047526.1 small ribosomal subunit protein S13 [Cucumis melo var. makuwa]3.13e-1284.21Show/hide
Query:  ANLTMVLEPLEVGLSIKGRRWSFDVSGNKLFLAAFDDV
        A LT+VLEPLEVGL+I+GRRWSFDVS NKLFLAAF+DV
Subjt:  ANLTMVLEPLEVGLSIKGRRWSFDVSGNKLFLAAFDDV

KAA0052379.1 hypothetical protein E6C27_scaffold207G002260 [Cucumis melo var. makuwa]1.13e-1282.5Show/hide
Query:  CLTANLTMVLEPLEVGLSIKGRRWSFDVSGNKLFLAAFDD
        CLTA LTMVLE LEVGL+I+GRRWSFDV+ N LFLAAFDD
Subjt:  CLTANLTMVLEPLEVGLSIKGRRWSFDVSGNKLFLAAFDD

TYK00149.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]8.17e-0985.71Show/hide
Query:  ANLTMVLEPLEVGLSIKGRRWSFDVSGNKLFLAAF
        A LTMVLEP EVGL I GRRWSFDVSGN LFLAAF
Subjt:  ANLTMVLEPLEVGLSIKGRRWSFDVSGNKLFLAAF

TYK30860.1 reactive Intermediate Deaminase A [Cucumis melo var. makuwa]1.87e-1282.5Show/hide
Query:  CLTANLTMVLEPLEVGLSIKGRRWSFDVSGNKLFLAAFDD
        CLTA LTMVLE LEVGL+I+GRRWSFDV+ N LFLAAFDD
Subjt:  CLTANLTMVLEPLEVGLSIKGRRWSFDVSGNKLFLAAFDD

TrEMBL top hitse value%identityAlignment
A0A5A7TR50 Uncharacterized protein3.0e-1970.89Show/hide
Query:  MVSDVPTRREKLVNGEEDIRGLFCTVYGSSSVRFNSFATCLTANLTMVLEPLEVGLSIKGRRWSFDVSGNKLFLAAFDD
        MVSDVPTRRE LVNGEEDIR                      ANLTMVLEPLEVGLSIKGRRWSFDVSGNKLFLAAFDD
Subjt:  MVSDVPTRREKLVNGEEDIRGLFCTVYGSSSVRFNSFATCLTANLTMVLEPLEVGLSIKGRRWSFDVSGNKLFLAAFDD

A0A5A7UFX3 Uncharacterized protein6.2e-0982.5Show/hide
Query:  CLTANLTMVLEPLEVGLSIKGRRWSFDVSGNKLFLAAFDD
        CLTA LTMVLE LEVGL+I+GRRWSFDV+ N LFLAAFDD
Subjt:  CLTANLTMVLEPLEVGLSIKGRRWSFDVSGNKLFLAAFDD

A0A5D3BPV7 Ty3-gypsy retrotransposon protein1.3e-0685.71Show/hide
Query:  ANLTMVLEPLEVGLSIKGRRWSFDVSGNKLFLAAF
        A LTMVLEP EVGL I GRRWSFDVSGN LFLAAF
Subjt:  ANLTMVLEPLEVGLSIKGRRWSFDVSGNKLFLAAF

A0A5D3DT03 Small ribosomal subunit protein S134.8e-0984.21Show/hide
Query:  ANLTMVLEPLEVGLSIKGRRWSFDVSGNKLFLAAFDDV
        A LT+VLEPLEVGL+I+GRRWSFDVS NKLFLAAF+DV
Subjt:  ANLTMVLEPLEVGLSIKGRRWSFDVSGNKLFLAAFDDV

A0A5D3E5H8 Reactive Intermediate Deaminase A6.2e-0982.5Show/hide
Query:  CLTANLTMVLEPLEVGLSIKGRRWSFDVSGNKLFLAAFDD
        CLTA LTMVLE LEVGL+I+GRRWSFDV+ N LFLAAFDD
Subjt:  CLTANLTMVLEPLEVGLSIKGRRWSFDVSGNKLFLAAFDD

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTTTCTGACGTTCCAACAAGAAGAGAGAAGTTAGTCAATGGAGAGGAAGACATTAGAGGTTTATTTTGCACTGTTTACGGCAGCTCTAGCGTTCGTTTCAACAGCTT
CGCAACGTGTTTAACAGCTAATTTAACCATGGTTTTAGAGCCGTTAGAGGTTGGTTTATCCATCAAAGGAAGACGTTGGAGTTTTGACGTCAGCGGCAACAAGCTTTTTT
TAGCAGCGTTTGACGACGTTTGA
mRNA sequenceShow/hide mRNA sequence
ATGGTTTCTGACGTTCCAACAAGAAGAGAGAAGTTAGTCAATGGAGAGGAAGACATTAGAGGTTTATTTTGCACTGTTTACGGCAGCTCTAGCGTTCGTTTCAACAGCTT
CGCAACGTGTTTAACAGCTAATTTAACCATGGTTTTAGAGCCGTTAGAGGTTGGTTTATCCATCAAAGGAAGACGTTGGAGTTTTGACGTCAGCGGCAACAAGCTTTTTT
TAGCAGCGTTTGACGACGTTTGA
Protein sequenceShow/hide protein sequence
MVSDVPTRREKLVNGEEDIRGLFCTVYGSSSVRFNSFATCLTANLTMVLEPLEVGLSIKGRRWSFDVSGNKLFLAAFDDV