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IVF0020896 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0020896
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionTy3-gypsy retrotransposon protein
Genome locationchr06:18661306..18661599
RNA-Seq ExpressionIVF0020896
SyntenyIVF0020896
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0062630.1 hypothetical protein E6C27_scaffold79G001410 [Cucumis melo var. makuwa]3.00e-2057.95Show/hide
Query:  MEEIIDHPLQREKELLLEDAGERSLLSLPKSTLE----------AVREEEEVDEDYVLTFMDHYIRKPMEKGFEDIIQCQNNLQEMQL
        ++EI+D PLQ EKE L ED  E+SL S PK  LE          A++EEEEVD +YV  FMD +I KP+E+GFEDI QCQ+NLQEMQL
Subjt:  MEEIIDHPLQREKELLLEDAGERSLLSLPKSTLE----------AVREEEEVDEDYVLTFMDHYIRKPMEKGFEDIIQCQNNLQEMQL

KAE8646246.1 hypothetical protein Csa_023826, partial [Cucumis sativus]7.15e-1847.47Show/hide
Query:  MEEIIDHPLQREKELLLEDAGERSLLSLPKSTLEAV------------REEEEVDEDYVLTFMDHYIRKPMEKGFEDIIQCQNNLQEMQLRNQKELRNL
        +EE+ID PLQ+EKE + ++ GE  L SLP   +EA             +  E VD+DY+  F++H++ KPME GFED+IQ Q+NLQEMQL +QK+L +L
Subjt:  MEEIIDHPLQREKELLLEDAGERSLLSLPKSTLEAV------------REEEEVDEDYVLTFMDHYIRKPMEKGFEDIIQCQNNLQEMQLRNQKELRNL

TYJ98052.1 hypothetical protein E5676_scaffold369G00020 [Cucumis melo var. makuwa]2.64e-1856.18Show/hide
Query:  MEEIIDHPLQREKELLLEDAGERSLLSLPKSTLE----------AVREEEEVDEDYVLTFMDHYIRKPMEKGFEDIIQCQNNLQEMQLR
        ++EI+D PLQ EKE L ED  E+SL S PK  LE          A++EEEEVD +YV  FMD +I K +E+GFEDI QCQ+NLQEMQ R
Subjt:  MEEIIDHPLQREKELLLEDAGERSLLSLPKSTLE----------AVREEEEVDEDYVLTFMDHYIRKPMEKGFEDIIQCQNNLQEMQLR

TYK02157.1 hypothetical protein E5676_scaffold388G00470 [Cucumis melo var. makuwa]5.94e-1559.46Show/hide
Query:  EIIDHPLQREKELLLEDAGERSLLSLPKST----------LEAVREEEEVDEDYVLTFMDHYIRKPMEKGFEDI
        E ID P+Q EKE LLED GE+SL S PKS            E VREE+EVD DYV+ FMD +I KP+EKGFEDI
Subjt:  EIIDHPLQREKELLLEDAGERSLLSLPKST----------LEAVREEEEVDEDYVLTFMDHYIRKPMEKGFEDI

TYK11947.1 hypothetical protein E5676_scaffold177G001300 [Cucumis melo var. makuwa]7.43e-2058.14Show/hide
Query:  MEEIIDHPLQREKELLLEDAGERSLLSLPKST----------LEAVREEEEVDEDYVLTFMDHYIRKPMEKGFEDIIQCQNNLQEM
        M+E ID PLQREKE + ED GE+SL S  KS            EAVREEEEV  DYV  F+D YI KP+E+GF+DI QC++NLQEM
Subjt:  MEEIIDHPLQREKELLLEDAGERSLLSLPKST----------LEAVREEEEVDEDYVLTFMDHYIRKPMEKGFEDIIQCQNNLQEM

TrEMBL top hitse value%identityAlignment
A0A5A7U2H3 Uncharacterized protein5.6e-1157.33Show/hide
Query:  EEIIDHPLQREKELLLEDAGERSLLSLPKS----------TLEAVREEEEVDEDYVLTFMDHYIRKPMEKGFEDI
        +E ID P+Q EKE LLED GE+SL S PKS            E V+EE+EVD DYV+ FMD +I KP+EKGFEDI
Subjt:  EEIIDHPLQREKELLLEDAGERSLLSLPKS----------TLEAVREEEEVDEDYVLTFMDHYIRKPMEKGFEDI

A0A5A7V5X0 Uncharacterized protein9.8e-1657.95Show/hide
Query:  MEEIIDHPLQREKELLLEDAGERSLLSLPKSTL----------EAVREEEEVDEDYVLTFMDHYIRKPMEKGFEDIIQCQNNLQEMQL
        ++EI+D PLQ EKE L ED  E+SL S PK  L          EA++EEEEVD +YV  FMD +I KP+E+GFEDI QCQ+NLQEMQL
Subjt:  MEEIIDHPLQREKELLLEDAGERSLLSLPKSTL----------EAVREEEEVDEDYVLTFMDHYIRKPMEKGFEDIIQCQNNLQEMQL

A0A5D3BE51 Uncharacterized protein1.1e-1454.95Show/hide
Query:  MEEIIDHPLQREKELLLEDAGERSLLSLPKSTL----------EAVREEEEVDEDYVLTFMDHYIRKPMEKGFEDIIQCQNNLQEMQLRNQ
        ++EI+D PLQ EKE L ED  E+SL S PK  L          EA++EEEEVD +YV  FMD +I K +E+GFEDI QCQ+NLQEMQ R++
Subjt:  MEEIIDHPLQREKELLLEDAGERSLLSLPKSTL----------EAVREEEEVDEDYVLTFMDHYIRKPMEKGFEDIIQCQNNLQEMQLRNQ

A0A5D3BRW7 Uncharacterized protein2.5e-1158.67Show/hide
Query:  EEIIDHPLQREKELLLEDAGERSLLSLPKS----------TLEAVREEEEVDEDYVLTFMDHYIRKPMEKGFEDI
        +E ID P+Q EKE LLED GE+SL S PKS            E VREE+EVD DYV+ FMD +I KP+EKGFEDI
Subjt:  EEIIDHPLQREKELLLEDAGERSLLSLPKS----------TLEAVREEEEVDEDYVLTFMDHYIRKPMEKGFEDI

A0A5D3CJ32 Uncharacterized protein1.8e-1458.14Show/hide
Query:  MEEIIDHPLQREKELLLEDAGERSLLSLPKS----------TLEAVREEEEVDEDYVLTFMDHYIRKPMEKGFEDIIQCQNNLQEM
        M+E ID PLQREKE + ED GE+SL S  KS            EAVREEEEV  DYV  F+D YI KP+E+GF+DI QC++NLQEM
Subjt:  MEEIIDHPLQREKELLLEDAGERSLLSLPKS----------TLEAVREEEEVDEDYVLTFMDHYIRKPMEKGFEDIIQCQNNLQEM

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGGAAATTATTGATCACCCACTCCAAAGGGAAAAGGAATTACTCCTTGAGGATGCTGGTGAGAGAAGCCTCCTCTCACTACCCAAATCAACTCTAGAAGCGGTGAG
AGAAGAAGAAGAAGTTGATGAGGATTATGTTTTAACGTTCATGGATCATTACATCCGTAAACCAATGGAGAAAGGATTTGAAGACATAATCCAGTGCCAAAATAATTTGC
AAGAGATGCAACTGCGTAATCAAAAAGAACTAAGAAACTTGTAA
mRNA sequenceShow/hide mRNA sequence
ATGGAGGAAATTATTGATCACCCACTCCAAAGGGAAAAGGAATTACTCCTTGAGGATGCTGGTGAGAGAAGCCTCCTCTCACTACCCAAATCAACTCTAGAAGCGGTGAG
AGAAGAAGAAGAAGTTGATGAGGATTATGTTTTAACGTTCATGGATCATTACATCCGTAAACCAATGGAGAAAGGATTTGAAGACATAATCCAGTGCCAAAATAATTTGC
AAGAGATGCAACTGCGTAATCAAAAAGAACTAAGAAACTTGTAA
Protein sequenceShow/hide protein sequence
MEEIIDHPLQREKELLLEDAGERSLLSLPKSTLEAVREEEEVDEDYVLTFMDHYIRKPMEKGFEDIIQCQNNLQEMQLRNQKELRNL