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IVF0020935 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0020935
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionTy3-gypsy retrotransposon protein
Genome locationchr10:16104983..16105333
RNA-Seq ExpressionIVF0020935
SyntenyIVF0020935
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0053226.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]8.45e-0854.39Show/hide
Query:  DGIRLAMAWLCERLEFTDDAVGLATAWLCERLEFTDNTAGMAGDERWFSAVDGGRRQ
        DG RLA  WL +RLEFTDD   LATAWLCE+LEFT +   +   ER   AV  G  +
Subjt:  DGIRLAMAWLCERLEFTDDAVGLATAWLCERLEFTDNTAGMAGDERWFSAVDGGRRQ
TrEMBL top hitse value%identityAlignment
A0A5A7UG81 Ty3-gypsy retrotransposon protein1.2e-0554.39Show/hide
Query:  DGIRLAMAWLCERLEFTDDAVGLATAWLCERLEFTDNTAGMAGDERWFSAVDGGRRQ
        DG RLA  WL +RLEFTDD   LATAWLCE+LEFT +   +   ER   AV  G  +
Subjt:  DGIRLAMAWLCERLEFTDDAVGLATAWLCERLEFTDNTAGMAGDERWFSAVDGGRRQ
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACTTGGGTAGGGGCGACTGGCGCAGGCGTGCAGCTCGGACGCAGGAGGGCGGCTCGACTAAGGTACGCGCGACATGAATTTCATCCGGCTCGACTCAGCGAAGGGCA
GGAAAAAGCGGGTCCAGGCGCGCACGACTCGACTTGGCATCTGGCTTCACGGACTTCGACGGATGGCATCCGACTTGCGATGGCGTGGCTGTGCGAGCGGCTAGAGTTCA
CGGACGACGCGGTTGGACTTGCGACAGCGTGGCTGTGCGAGCGACTGGAGTTCACGGACAACACGGCTGGGATGGCTGGCGATGAACGGTGGTTTTCAGCGGTCGACGGA
GGGCGGCGGCAAGGAAACTAG
mRNA sequenceShow/hide mRNA sequence
ATGACTTGGGTAGGGGCGACTGGCGCAGGCGTGCAGCTCGGACGCAGGAGGGCGGCTCGACTAAGGTACGCGCGACATGAATTTCATCCGGCTCGACTCAGCGAAGGGCA
GGAAAAAGCGGGTCCAGGCGCGCACGACTCGACTTGGCATCTGGCTTCACGGACTTCGACGGATGGCATCCGACTTGCGATGGCGTGGCTGTGCGAGCGGCTAGAGTTCA
CGGACGACGCGGTTGGACTTGCGACAGCGTGGCTGTGCGAGCGACTGGAGTTCACGGACAACACGGCTGGGATGGCTGGCGATGAACGGTGGTTTTCAGCGGTCGACGGA
GGGCGGCGGCAAGGAAACTAG
Protein sequenceShow/hide protein sequence
MTWVGATGAGVQLGRRRAARLRYARHEFHPARLSEGQEKAGPGAHDSTWHLASRTSTDGIRLAMAWLCERLEFTDDAVGLATAWLCERLEFTDNTAGMAGDERWFSAVDG
GRRQGN