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IVF0020968 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0020968
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description50S ribosomal protein L6, putative
Genome locationchr08:5421483..5424608
RNA-Seq ExpressionIVF0020968
SyntenyIVF0020968
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0005840 - ribosome (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
GO:0019843 - rRNA binding (molecular function)
InterPro domainsIPR000702 - Ribosomal protein L6
IPR002358 - Ribosomal protein L6, conserved site
IPR019906 - Ribosomal protein L6, bacterial-type
IPR020040 - Ribosomal protein L6, alpha-beta domain
IPR036789 - Ribosomal protein L6, alpha-beta domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
PON38569.1 Ribosomal protein [Parasponia andersonii]1.42e-6596.08Show/hide
Query:  MEAKFFRFLKIVGVGYKARAEAAGRLLYLKLGYSHEVELTVPPAVRVFCFKNNVVCCTGIDKYRVHQFAAAVRSCKPPEVYKGKGIMYIDEVIKRKQGKK
        MEA+FFRFLKIVGVGYKARAE+AGRLLYLKLGYSHEVELTVPPAVRVFCFKNNVVCCTGIDK RVHQFAAAVRSCKPPEVYKGKGIMYIDEVIK+KQGKK
Subjt:  MEAKFFRFLKIVGVGYKARAEAAGRLLYLKLGYSHEVELTVPPAVRVFCFKNNVVCCTGIDKYRVHQFAAAVRSCKPPEVYKGKGIMYIDEVIKRKQGKK

Query:  SK
        SK
Subjt:  SK

XP_004143514.1 uncharacterized protein LOC101220210 [Cucumis sativus]6.02e-6798.04Show/hide
Query:  MEAKFFRFLKIVGVGYKARAEAAGRLLYLKLGYSHEVELTVPPAVRVFCFKNNVVCCTGIDKYRVHQFAAAVRSCKPPEVYKGKGIMYIDEVIKRKQGKK
        MEAKFFRFLKIVGVGYKARAEAAGRLLYLKLGYSHEVELTVPPAVRVFCFKNNVVCCTGIDK RVHQFAAAVRSCKPPEVYKGKGIMY+DEVIKRKQGKK
Subjt:  MEAKFFRFLKIVGVGYKARAEAAGRLLYLKLGYSHEVELTVPPAVRVFCFKNNVVCCTGIDKYRVHQFAAAVRSCKPPEVYKGKGIMYIDEVIKRKQGKK

Query:  SK
        SK
Subjt:  SK

XP_008440709.1 PREDICTED: 60S ribosomal protein L6, mitochondrial [Cucumis melo]2.55e-68100Show/hide
Query:  MEAKFFRFLKIVGVGYKARAEAAGRLLYLKLGYSHEVELTVPPAVRVFCFKNNVVCCTGIDKYRVHQFAAAVRSCKPPEVYKGKGIMYIDEVIKRKQGKK
        MEAKFFRFLKIVGVGYKARAEAAGRLLYLKLGYSHEVELTVPPAVRVFCFKNNVVCCTGIDKYRVHQFAAAVRSCKPPEVYKGKGIMYIDEVIKRKQGKK
Subjt:  MEAKFFRFLKIVGVGYKARAEAAGRLLYLKLGYSHEVELTVPPAVRVFCFKNNVVCCTGIDKYRVHQFAAAVRSCKPPEVYKGKGIMYIDEVIKRKQGKK

Query:  SK
        SK
Subjt:  SK

XP_019059560.1 PREDICTED: uncharacterized protein LOC109117197 [Tarenaya hassleriana]1.00e-6596.08Show/hide
Query:  MEAKFFRFLKIVGVGYKARAEAAGRLLYLKLGYSHEVELTVPPAVRVFCFKNNVVCCTGIDKYRVHQFAAAVRSCKPPEVYKGKGIMYIDEVIKRKQGKK
        MEAKFFRFLKIVGVGYKARAEAAGRLLYLKLGYSHEVEL VPPAVRVFCFKNNVVCCTGIDK+RVHQFAA VRSCKPPEVYKGKGIMYIDEVIK+KQGKK
Subjt:  MEAKFFRFLKIVGVGYKARAEAAGRLLYLKLGYSHEVELTVPPAVRVFCFKNNVVCCTGIDKYRVHQFAAAVRSCKPPEVYKGKGIMYIDEVIKRKQGKK

Query:  SK
        SK
Subjt:  SK

XP_022950399.1 uncharacterized protein LOC111453510 [Cucurbita moschata]1.22e-6698.04Show/hide
Query:  MEAKFFRFLKIVGVGYKARAEAAGRLLYLKLGYSHEVELTVPPAVRVFCFKNNVVCCTGIDKYRVHQFAAAVRSCKPPEVYKGKGIMYIDEVIKRKQGKK
        MEAKFFRFLKIVGVGYKARAEAAGRLLYLKLGYSHEVELTVPPAVRVFCFKNNVVCCTGIDK RVHQFAAAVRSCKPPEVYKGKGIMYIDEVIK+KQGKK
Subjt:  MEAKFFRFLKIVGVGYKARAEAAGRLLYLKLGYSHEVELTVPPAVRVFCFKNNVVCCTGIDKYRVHQFAAAVRSCKPPEVYKGKGIMYIDEVIKRKQGKK

Query:  SK
        SK
Subjt:  SK

TrEMBL top hitse value%identityAlignment
A0A0A0KJ40 Ribosomal_L6 domain-containing protein7.1e-5098.04Show/hide
Query:  MEAKFFRFLKIVGVGYKARAEAAGRLLYLKLGYSHEVELTVPPAVRVFCFKNNVVCCTGIDKYRVHQFAAAVRSCKPPEVYKGKGIMYIDEVIKRKQGKK
        MEAKFFRFLKIVGVGYKARAEAAGRLLYLKLGYSHEVELTVPPAVRVFCFKNNVVCCTGIDK RVHQFAAAVRSCKPPEVYKGKGIMY+DEVIKRKQGKK
Subjt:  MEAKFFRFLKIVGVGYKARAEAAGRLLYLKLGYSHEVELTVPPAVRVFCFKNNVVCCTGIDKYRVHQFAAAVRSCKPPEVYKGKGIMYIDEVIKRKQGKK

Query:  SK
        SK
Subjt:  SK

A0A1S3B2D0 60S ribosomal protein L6, mitochondrial6.4e-51100Show/hide
Query:  MEAKFFRFLKIVGVGYKARAEAAGRLLYLKLGYSHEVELTVPPAVRVFCFKNNVVCCTGIDKYRVHQFAAAVRSCKPPEVYKGKGIMYIDEVIKRKQGKK
        MEAKFFRFLKIVGVGYKARAEAAGRLLYLKLGYSHEVELTVPPAVRVFCFKNNVVCCTGIDKYRVHQFAAAVRSCKPPEVYKGKGIMYIDEVIKRKQGKK
Subjt:  MEAKFFRFLKIVGVGYKARAEAAGRLLYLKLGYSHEVELTVPPAVRVFCFKNNVVCCTGIDKYRVHQFAAAVRSCKPPEVYKGKGIMYIDEVIKRKQGKK

Query:  SK
        SK
Subjt:  SK

A0A5D3CL55 60S ribosomal protein L66.4e-51100Show/hide
Query:  MEAKFFRFLKIVGVGYKARAEAAGRLLYLKLGYSHEVELTVPPAVRVFCFKNNVVCCTGIDKYRVHQFAAAVRSCKPPEVYKGKGIMYIDEVIKRKQGKK
        MEAKFFRFLKIVGVGYKARAEAAGRLLYLKLGYSHEVELTVPPAVRVFCFKNNVVCCTGIDKYRVHQFAAAVRSCKPPEVYKGKGIMYIDEVIKRKQGKK
Subjt:  MEAKFFRFLKIVGVGYKARAEAAGRLLYLKLGYSHEVELTVPPAVRVFCFKNNVVCCTGIDKYRVHQFAAAVRSCKPPEVYKGKGIMYIDEVIKRKQGKK

Query:  SK
        SK
Subjt:  SK

A0A6J1GFP3 uncharacterized protein LOC1114535101.2e-4998.04Show/hide
Query:  MEAKFFRFLKIVGVGYKARAEAAGRLLYLKLGYSHEVELTVPPAVRVFCFKNNVVCCTGIDKYRVHQFAAAVRSCKPPEVYKGKGIMYIDEVIKRKQGKK
        MEAKFFRFLKIVGVGYKARAEAAGRLLYLKLGYSHEVELTVPPAVRVFCFKNNVVCCTGIDK RVHQFAAAVRSCKPPEVYKGKGIMYIDEVIK+KQGKK
Subjt:  MEAKFFRFLKIVGVGYKARAEAAGRLLYLKLGYSHEVELTVPPAVRVFCFKNNVVCCTGIDKYRVHQFAAAVRSCKPPEVYKGKGIMYIDEVIKRKQGKK

Query:  SK
        SK
Subjt:  SK

A0A6J1IQJ4 uncharacterized protein LOC1114785181.2e-4998.04Show/hide
Query:  MEAKFFRFLKIVGVGYKARAEAAGRLLYLKLGYSHEVELTVPPAVRVFCFKNNVVCCTGIDKYRVHQFAAAVRSCKPPEVYKGKGIMYIDEVIKRKQGKK
        MEAKFFRFLKIVGVGYKARAEAAGRLLYLKLGYSHEVELTVPPAVRVFCFKNNVVCCTGIDK RVHQFAAAVRSCKPPEVYKGKGIMYIDEVIK+KQGKK
Subjt:  MEAKFFRFLKIVGVGYKARAEAAGRLLYLKLGYSHEVELTVPPAVRVFCFKNNVVCCTGIDKYRVHQFAAAVRSCKPPEVYKGKGIMYIDEVIKRKQGKK

Query:  SK
        SK
Subjt:  SK

SwissProt top hitse value%identityAlignment
B2IK77 50S ribosomal protein L63.1e-1850Show/hide
Query:  FFRFLKIVGVGYKARAEAAGRLLYLKLGYSHEVELTVPPAVRVFCFKNNVVCCTGIDKYRVHQFAAAVRSCKPPEVYKGKGIMYIDEVIKRKQGKK
        F R L+I GVGYKA  +  G+ L L LGYSH++   +P  + +   K   V  TGIDK RV Q AA +R+ +PPE YKGKG+ Y  E I RK+GKK
Subjt:  FFRFLKIVGVGYKARAEAAGRLLYLKLGYSHEVELTVPPAVRVFCFKNNVVCCTGIDKYRVHQFAAAVRSCKPPEVYKGKGIMYIDEVIKRKQGKK

P26861 60S ribosomal protein L6, mitochondrial4.8e-3568Show/hide
Query:  MEAKFFRFLKIVGVGYKARAEAAGRLLYLKLGYSHEVELTVPPAVRVFCFKNNVVCCTGIDKYRVHQFAAAVRSCKPPEVYKGKGIMYIDEVIKRKQGKK
        MEAKFF FL+I+GVGYKA   A G +LYLKLG+SHE+ L V P+VRVFC K N++CCTG+D  +V QFAA V+SCKPPEVYKGKGI Y +E+I +KQGKK
Subjt:  MEAKFFRFLKIVGVGYKARAEAAGRLLYLKLGYSHEVELTVPPAVRVFCFKNNVVCCTGIDKYRVHQFAAAVRSCKPPEVYKGKGIMYIDEVIKRKQGKK

P82193 50S ribosomal protein L6, chloroplastic8.2e-1948.98Show/hide
Query:  FFRFLKIVGVGYKARAEAAGRLLYLKLGYSHEVELTVPPAVRVFCFKNNVVCCTGIDKYRVHQFAAAVRSCKPPEVYKGKGIMYIDEVIKRKQGKKSK
        F + L++VGVGY+A  E  G+ L L LG+SH V + +P  ++V   +N  V  +G DK  V QFAA +RS +PPE YKGKG+ Y+DEV++RK+GK  K
Subjt:  FFRFLKIVGVGYKARAEAAGRLLYLKLGYSHEVELTVPPAVRVFCFKNNVVCCTGIDKYRVHQFAAAVRSCKPPEVYKGKGIMYIDEVIKRKQGKKSK

Q2JQN4 50S ribosomal protein L61.1e-1848.98Show/hide
Query:  FFRFLKIVGVGYKARAEAAGRLLYLKLGYSHEVELTVPPAVRVFCFKNNVVCCTGIDKYRVHQFAAAVRSCKPPEVYKGKGIMYIDEVIKRKQGKKSK
        F R L++VGVGY  RA   G  L L +GYSH VE+  PP +++    NNV+  +GIDK  V   AA +R+ +PPE YKGKGI Y+ E ++RK GK  K
Subjt:  FFRFLKIVGVGYKARAEAAGRLLYLKLGYSHEVELTVPPAVRVFCFKNNVVCCTGIDKYRVHQFAAAVRSCKPPEVYKGKGIMYIDEVIKRKQGKKSK

Q38US6 50S ribosomal protein L64.1e-1847.96Show/hide
Query:  FFRFLKIVGVGYKARAEAAGRLLYLKLGYSHEVELTVPPAVRVFCFKNNVVCCTGIDKYRVHQFAAAVRSCKPPEVYKGKGIMYIDEVIKRKQGKKSK
        F + L ++GVGY  RA+  G+ L L +GYSH VE+  P  V V    N  +  +GI K +V QFAA +R  +PPE YKGKGI Y DE ++RK+GK  K
Subjt:  FFRFLKIVGVGYKARAEAAGRLLYLKLGYSHEVELTVPPAVRVFCFKNNVVCCTGIDKYRVHQFAAAVRSCKPPEVYKGKGIMYIDEVIKRKQGKKSK

Arabidopsis top hitse value%identityAlignment
AT1G05190.1 Ribosomal protein L6 family8.4e-1944.9Show/hide
Query:  FFRFLKIVGVGYKARAEAAGRLLYLKLGYSHEVELTVPPAVRVFCFKNNVVCCTGIDKYRVHQFAAAVRSCKPPEVYKGKGIMYIDEVIKRKQGKKSK
        F + L +VGVGY+A  +  G+ L L LG+SH V++ +P +++V   +N  +  +G DK  + QFAA VR  +PPE YKGKG+ Y DE+++RK+GK  K
Subjt:  FFRFLKIVGVGYKARAEAAGRLLYLKLGYSHEVELTVPPAVRVFCFKNNVVCCTGIDKYRVHQFAAAVRSCKPPEVYKGKGIMYIDEVIKRKQGKKSK

AT2G18400.1 ribosomal protein L6 family protein7.0e-5091.18Show/hide
Query:  MEAKFFRFLKIVGVGYKARAEAAGRLLYLKLGYSHEVELTVPPAVRVFCFKNNVVCCTGIDKYRVHQFAAAVRSCKPPEVYKGKGIMYIDEVIKRKQGKK
        MEAKFFRFLKIVGVGYKARAE AGR LYLKLGYSHEVEL VPPAVRVFCFKNNVVCCTGIDK RVHQFAA VRSCKPPE YKGKGIMY DEV+K+KQGKK
Subjt:  MEAKFFRFLKIVGVGYKARAEAAGRLLYLKLGYSHEVELTVPPAVRVFCFKNNVVCCTGIDKYRVHQFAAAVRSCKPPEVYKGKGIMYIDEVIKRKQGKK

Query:  SK
        SK
Subjt:  SK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGGCTAAATTTTTTCGGTTCCTTAAGATTGTGGGAGTTGGGTACAAAGCCAGAGCCGAAGCAGCAGGACGCCTCTTGTATCTTAAACTGGGATACAGTCATGAAGT
TGAGCTAACCGTTCCACCAGCTGTTCGTGTCTTTTGCTTCAAAAACAATGTGGTATGTTGCACAGGGATTGACAAATATAGGGTACACCAATTTGCTGCTGCAGTTCGTA
GCTGTAAGCCACCAGAAGTGTACAAAGGCAAGGGCATCATGTATATCGACGAGGTCATAAAGAGGAAACAAGGAAAGAAGTCTAAATAA
mRNA sequenceShow/hide mRNA sequence
TTTTCGTAATTCGCCGCACGCCCCTTTTCTTCAATCTTCAGTTCAGCTTCCTCCCCGTCGGCCGACCATTTCTTCGCTCGCCCTTCAAGCCGGCCGCCCCCCCTCCGCCG
GTGTCCAGTTGCCCTCTTCGACACTGTTCGTCCTTCATCATTTTTTCCGCCTTCCCTGTTGTCCTCCTTCCCGCCAACACTTTGGATTTGGTGTTGAATTTGTTTTCTGA
CTGCACTTAGGTAAGCAGGAACTATAATGGAGGCTAAATTTTTTCGGTTCCTTAAGATTGTGGGAGTTGGGTACAAAGCCAGAGCCGAAGCAGCAGGACGCCTCTTGTAT
CTTAAACTGGGATACAGTCATGAAGTTGAGCTAACCGTTCCACCAGCTGTTCGTGTCTTTTGCTTCAAAAACAATGTGGTATGTTGCACAGGGATTGACAAATATAGGGT
ACACCAATTTGCTGCTGCAGTTCGTAGCTGTAAGCCACCAGAAGTGTACAAAGGCAAGGGCATCATGTATATCGACGAGGTCATAAAGAGGAAACAAGGAAAGAAGTCTA
AATAAGATAACAGAAGCACAAAATCCCTCGTTGATCTTTATTCAGACACAAAGTGCCTCAGTTATGAATAATTGTTTTTGTTGTATGCATGTTTTTAGAGCATTCCATGA
ATTTAGCCATGCGACTGAACTGTAATTGCTTCAATGCCTATTCTTGAAATGTCATCTCATCGGTCATTGATGTTGAATGTTGAAGAATGCAGACCATGCAAGAAAAGGCT
ATTTGAGTTGAGCGTTGTCGACCATTAACCTTTTTCTTTTTCTTTTCATGTGGGATGGAGCCTCTGACCACGTTGATCATTGAGGTTCAACTCTCATACACTTGCTTGTA
TTATGAGTAGTAATGCCCTCTTTTCTTTGCAAGATGTTTATGCCAATTTTCTCACGGACCTTGATTAAAGTTTCAAACAAAACAGCC
Protein sequenceShow/hide protein sequence
MEAKFFRFLKIVGVGYKARAEAAGRLLYLKLGYSHEVELTVPPAVRVFCFKNNVVCCTGIDKYRVHQFAAAVRSCKPPEVYKGKGIMYIDEVIKRKQGKKSK