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IVF0021055 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0021055
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionRetrotrans_gag domain-containing protein
Genome locationchr01:14485611..14485961
RNA-Seq ExpressionIVF0021055
SyntenyIVF0021055
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0038045.1 uncharacterized protein E6C27_scaffold36G002470 [Cucumis melo var. makuwa]1.59e-6487.07Show/hide
Query:  MVINHNDNQDEGDSFDGLDDDQVTLLGESRRVGHGVVRRRGRGRVYQNIQRRAQQEAPQFERNMGAIKFKIPKFFGKTDLKEYIQWEKKVENVFACHNFT
        MVINHNDNQDEGD  DGLDDDQVTLL ESRR GH VVRR+GRGR YQNIQRRAQQEAPQFERN+ AIKFKI KFFGKTD +EYIQWEK+VENVFACHNFT
Subjt:  MVINHNDNQDEGDSFDGLDDDQVTLLGESRRVGHGVVRRRGRGRVYQNIQRRAQQEAPQFERNMGAIKFKIPKFFGKTDLKEYIQWEKKVENVFACHNFT

Query:  DEQKVRFCVSKFKDYA
        +EQKVRFCV KFKDYA
Subjt:  DEQKVRFCVSKFKDYA

KAA0040916.1 uncharacterized protein E6C27_scaffold125G00290 [Cucumis melo var. makuwa]2.57e-4486.9Show/hide
Query:  GHGVVRRRGRGRVYQNIQRRAQQEAPQFERNMGAIKFKIPKFFGKTDLKEYIQWEKKVENVFACHNFTDEQKVRFCVSKFKDYA
        G+GVVRRRGR R YQNIQRRAQQEAP+FE NMGAIKFKIPKFF KTD +EYIQWEK+VENVF CHNF DEQKVRFCVSKFKDYA
Subjt:  GHGVVRRRGRGRVYQNIQRRAQQEAPQFERNMGAIKFKIPKFFGKTDLKEYIQWEKKVENVFACHNFTDEQKVRFCVSKFKDYA

KAA0043652.1 uncharacterized protein E6C27_scaffold320G001000 [Cucumis melo var. makuwa]5.75e-6386.21Show/hide
Query:  MVINHNDNQDEGDSFDGLDDDQVTLLGESRRVGHGVVRRRGRGRVYQNIQRRAQQEAPQFERNMGAIKFKIPKFFGKTDLKEYIQWEKKVENVFACHNFT
        M+INHNDNQDEGD  D LDDDQVTLLGE RRVGHGVVRRRGRGR YQNIQRRAQQEA QFE NM AIKFKIPKFF KTD KEYI+WEK+VENVF CHNFT
Subjt:  MVINHNDNQDEGDSFDGLDDDQVTLLGESRRVGHGVVRRRGRGRVYQNIQRRAQQEAPQFERNMGAIKFKIPKFFGKTDLKEYIQWEKKVENVFACHNFT

Query:  DEQKVRFCVSKFKDYA
        DEQKVRF VSK KDYA
Subjt:  DEQKVRFCVSKFKDYA

KAA0047036.1 uncharacterized protein E6C27_scaffold829G00200 [Cucumis melo var. makuwa]5.35e-6281.74Show/hide
Query:  MVINHNDNQDEGDSFDGLDDDQVTLLGESRRVGHGVVRRRGRGRVYQNIQRRAQQEAPQFERNMGAIKFKIPKFFGKTDLKEYIQWEKKVENVFACHNFT
        M INHN+NQ EGD  D LDDDQVTLL E RRVGHGVVRRRG G+ YQNIQRR QQE PQ ERNM AIKFKIPKFFGKTD +EYIQWEK+VENVFACHNF+
Subjt:  MVINHNDNQDEGDSFDGLDDDQVTLLGESRRVGHGVVRRRGRGRVYQNIQRRAQQEAPQFERNMGAIKFKIPKFFGKTDLKEYIQWEKKVENVFACHNFT

Query:  DEQKVRFCVSKFKDY
        +EQKVRFCV+KFKDY
Subjt:  DEQKVRFCVSKFKDY

TYK09709.1 uncharacterized protein E5676_scaffold447G001250 [Cucumis melo var. makuwa]3.07e-6386.21Show/hide
Query:  MVINHNDNQDEGDSFDGLDDDQVTLLGESRRVGHGVVRRRGRGRVYQNIQRRAQQEAPQFERNMGAIKFKIPKFFGKTDLKEYIQWEKKVENVFACHNFT
        M+INHNDNQDEGD  D LDDDQVTLLGE RRVGHGVVRRRGRGR YQNIQRRAQQEA QFE NM AIKFKIPKFF KTD KEYI+WEK+VENVF CHNFT
Subjt:  MVINHNDNQDEGDSFDGLDDDQVTLLGESRRVGHGVVRRRGRGRVYQNIQRRAQQEAPQFERNMGAIKFKIPKFFGKTDLKEYIQWEKKVENVFACHNFT

Query:  DEQKVRFCVSKFKDYA
        DEQKVRF VSK KDYA
Subjt:  DEQKVRFCVSKFKDYA

TrEMBL top hitse value%identityAlignment
A0A5A7T993 Retrotrans_gag domain-containing protein8.1e-5087.07Show/hide
Query:  MVINHNDNQDEGDSFDGLDDDQVTLLGESRRVGHGVVRRRGRGRVYQNIQRRAQQEAPQFERNMGAIKFKIPKFFGKTDLKEYIQWEKKVENVFACHNFT
        MVINHNDNQDEGD  DGLDDDQVTLL ESRR GH VVRR+GRGR YQNIQRRAQQEAPQFERN+ AIKFKI KFFGKTD +EYIQWEK+VENVFACHNFT
Subjt:  MVINHNDNQDEGDSFDGLDDDQVTLLGESRRVGHGVVRRRGRGRVYQNIQRRAQQEAPQFERNMGAIKFKIPKFFGKTDLKEYIQWEKKVENVFACHNFT

Query:  DEQKVRFCVSKFKDYA
        +EQKVRFCV KFKDYA
Subjt:  DEQKVRFCVSKFKDYA

A0A5A7TK52 Retrotrans_gag domain-containing protein2.6e-4886.21Show/hide
Query:  MVINHNDNQDEGDSFDGLDDDQVTLLGESRRVGHGVVRRRGRGRVYQNIQRRAQQEAPQFERNMGAIKFKIPKFFGKTDLKEYIQWEKKVENVFACHNFT
        M+INHNDNQDEGD  D LDDDQVTLLGE RRVGHGVVRRRGRGR YQNIQRRAQQEA QFE NM AIKFKIPKFF KTD KEYI+WEK+VENVF CHNFT
Subjt:  MVINHNDNQDEGDSFDGLDDDQVTLLGESRRVGHGVVRRRGRGRVYQNIQRRAQQEAPQFERNMGAIKFKIPKFFGKTDLKEYIQWEKKVENVFACHNFT

Query:  DEQKVRFCVSKFKDYA
        DEQKVRF VSK KDYA
Subjt:  DEQKVRFCVSKFKDYA

A0A5A7TYI0 Uncharacterized protein6.4e-4781.74Show/hide
Query:  MVINHNDNQDEGDSFDGLDDDQVTLLGESRRVGHGVVRRRGRGRVYQNIQRRAQQEAPQFERNMGAIKFKIPKFFGKTDLKEYIQWEKKVENVFACHNFT
        M INHN+NQ EGD  D LDDDQVTLL E RRVGHGVVRRRG G+ YQNIQRR QQE PQ ERNM AIKFKIPKFFGKTD +EYIQWEK+VENVFACHNF+
Subjt:  MVINHNDNQDEGDSFDGLDDDQVTLLGESRRVGHGVVRRRGRGRVYQNIQRRAQQEAPQFERNMGAIKFKIPKFFGKTDLKEYIQWEKKVENVFACHNFT

Query:  DEQKVRFCVSKFKDY
        +EQKVRFCV+KFKDY
Subjt:  DEQKVRFCVSKFKDY

A0A5D3CFQ1 CCHC-type domain-containing protein1.1e-3386.9Show/hide
Query:  GHGVVRRRGRGRVYQNIQRRAQQEAPQFERNMGAIKFKIPKFFGKTDLKEYIQWEKKVENVFACHNFTDEQKVRFCVSKFKDYA
        G+GVVRRRGR R YQNIQRRAQQEAP+FE NMGAIKFKIPKFF KTD +EYIQWEK+VENVF CHNF DEQKVRFCVSKFKDYA
Subjt:  GHGVVRRRGRGRVYQNIQRRAQQEAPQFERNMGAIKFKIPKFFGKTDLKEYIQWEKKVENVFACHNFTDEQKVRFCVSKFKDYA

A0A5D3CHG3 Retrotrans_gag domain-containing protein2.6e-4886.21Show/hide
Query:  MVINHNDNQDEGDSFDGLDDDQVTLLGESRRVGHGVVRRRGRGRVYQNIQRRAQQEAPQFERNMGAIKFKIPKFFGKTDLKEYIQWEKKVENVFACHNFT
        M+INHNDNQDEGD  D LDDDQVTLLGE RRVGHGVVRRRGRGR YQNIQRRAQQEA QFE NM AIKFKIPKFF KTD KEYI+WEK+VENVF CHNFT
Subjt:  MVINHNDNQDEGDSFDGLDDDQVTLLGESRRVGHGVVRRRGRGRVYQNIQRRAQQEAPQFERNMGAIKFKIPKFFGKTDLKEYIQWEKKVENVFACHNFT

Query:  DEQKVRFCVSKFKDYA
        DEQKVRF VSK KDYA
Subjt:  DEQKVRFCVSKFKDYA

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTAATTAACCATAATGATAACCAAGATGAGGGTGATAGTTTTGATGGCTTAGACGATGACCAAGTTACATTATTGGGGGAGTCGAGACGTGTGGGACATGGAGTAGT
TAGAAGAAGAGGTCGTGGGAGAGTTTACCAAAATATCCAAAGGAGAGCTCAACAAGAAGCACCTCAATTTGAGCGTAACATGGGAGCCATCAAATTTAAAATTCCAAAGT
TCTTCGGGAAAACTGATCTAAAGGAGTACATTCAGTGGGAAAAAAAGGTGGAGAATGTGTTTGCTTGCCATAATTTTACTGACGAGCAGAAGGTTAGATTTTGTGTTTCC
AAATTTAAGGATTATGCTTAA
mRNA sequenceShow/hide mRNA sequence
ATGGTAATTAACCATAATGATAACCAAGATGAGGGTGATAGTTTTGATGGCTTAGACGATGACCAAGTTACATTATTGGGGGAGTCGAGACGTGTGGGACATGGAGTAGT
TAGAAGAAGAGGTCGTGGGAGAGTTTACCAAAATATCCAAAGGAGAGCTCAACAAGAAGCACCTCAATTTGAGCGTAACATGGGAGCCATCAAATTTAAAATTCCAAAGT
TCTTCGGGAAAACTGATCTAAAGGAGTACATTCAGTGGGAAAAAAAGGTGGAGAATGTGTTTGCTTGCCATAATTTTACTGACGAGCAGAAGGTTAGATTTTGTGTTTCC
AAATTTAAGGATTATGCTTAA
Protein sequenceShow/hide protein sequence
MVINHNDNQDEGDSFDGLDDDQVTLLGESRRVGHGVVRRRGRGRVYQNIQRRAQQEAPQFERNMGAIKFKIPKFFGKTDLKEYIQWEKKVENVFACHNFTDEQKVRFCVS
KFKDYA