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IVF0021091 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0021091
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Descriptionupstream activation factor subunit spp27-like
Genome locationchr11:30419858..30421309
RNA-Seq ExpressionIVF0021091
SyntenyIVF0021091
Gene Ontology termsGO:0005634 - nucleus (cellular component)
InterPro domainsIPR003121 - SWIB/MDM2 domain
IPR019835 - SWIB domain
IPR036885 - SWIB/MDM2 domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6593744.1 hypothetical protein SDJN03_13220, partial [Cucurbita argyrosperma subsp. sororia]1.21e-6272.41Show/hide
Query:  MASGLSNGTRFFRGCKTLLDSLKPTTQAYSSTPAVSSKSKLKPPSAAVSGQKSKAAPKRQTNSSGGIMKSLKVSPTLAGFLGQSEISRADAIKQIWSYIK
        MASGL+NGTR FRGC+TLLDSLK TTQAYSS  AVS K ++K   AA S +KS+A  K++ N SGGI+KS++VSP LAGFLG SE SRA+A+KQIWSYIK
Subjt:  MASGLSNGTRFFRGCKTLLDSLKPTTQAYSSTPAVSSKSKLKPPSAAVSGQKSKAAPKRQTNSSGGIMKSLKVSPTLAGFLGQSEISRADAIKQIWSYIK

Query:  LNNLQNQTDKRQINCDAKLKAIFGGREKVGMLEISKFLSPHFVKS
        LNNLQN  +KRQINCD KLKAIF GRE VG LEI K LSPHFVKS
Subjt:  LNNLQNQTDKRQINCDAKLKAIFGGREKVGMLEISKFLSPHFVKS

KAG6593745.1 hypothetical protein SDJN03_13221, partial [Cucurbita argyrosperma subsp. sororia]2.44e-6272.41Show/hide
Query:  MASGLSNGTRFFRGCKTLLDSLKPTTQAYSSTPAVSSKSKLKPPSAAVSGQKSKAAPKRQTNSSGGIMKSLKVSPTLAGFLGQSEISRADAIKQIWSYIK
        MASGL+NGTR FRGC+TLLDSLK TTQAYSS  AVS K +LK   AA S +KS+A  K++ N SGGI+KS++VSP LAGFLG SE SR +A+KQIWSYIK
Subjt:  MASGLSNGTRFFRGCKTLLDSLKPTTQAYSSTPAVSSKSKLKPPSAAVSGQKSKAAPKRQTNSSGGIMKSLKVSPTLAGFLGQSEISRADAIKQIWSYIK

Query:  LNNLQNQTDKRQINCDAKLKAIFGGREKVGMLEISKFLSPHFVKS
        LNNLQN  +KRQINCD KLKAIF GRE VG+LEI K LSPHFVKS
Subjt:  LNNLQNQTDKRQINCDAKLKAIFGGREKVGMLEISKFLSPHFVKS

XP_004154030.1 upstream activation factor subunit UAF30 isoform X1 [Cucumis sativus]5.37e-7582.88Show/hide
Query:  MASGLSNGTRFFRGCKTLLDSLKPTTQAYSSTPAVSSKSKLKPPSAAVSGQKSKAAPKRQTNSSGGIMKSLKVSPTLAGFLGQSEISRADAIKQIWSYIK
        MASGLSNGTRFF+GC+TLLDSLK TTQAYSSTP VSSKS LKP +AAVSGQKSK APK+  N SGG++K+ KVSPTLAGFLGQSEI+R +A+KQIW YIK
Subjt:  MASGLSNGTRFFRGCKTLLDSLKPTTQAYSSTPAVSSKSKLKPPSAAVSGQKSKAAPKRQTNSSGGIMKSLKVSPTLAGFLGQSEISRADAIKQIWSYIK

Query:  LNNLQNQTDKRQINCDAKLKAIFGGREKVGMLEISKFLSPHFVKSG
        LNNLQN TDKRQI CDAKLKAIFGGREKVGMLEI KFLS HFVKSG
Subjt:  LNNLQNQTDKRQINCDAKLKAIFGGREKVGMLEISKFLSPHFVKSG

XP_008460088.1 PREDICTED: protein TRI1-like [Cucumis melo]1.35e-93100Show/hide
Query:  MASGLSNGTRFFRGCKTLLDSLKPTTQAYSSTPAVSSKSKLKPPSAAVSGQKSKAAPKRQTNSSGGIMKSLKVSPTLAGFLGQSEISRADAIKQIWSYIK
        MASGLSNGTRFFRGCKTLLDSLKPTTQAYSSTPAVSSKSKLKPPSAAVSGQKSKAAPKRQTNSSGGIMKSLKVSPTLAGFLGQSEISRADAIKQIWSYIK
Subjt:  MASGLSNGTRFFRGCKTLLDSLKPTTQAYSSTPAVSSKSKLKPPSAAVSGQKSKAAPKRQTNSSGGIMKSLKVSPTLAGFLGQSEISRADAIKQIWSYIK

Query:  LNNLQNQTDKRQINCDAKLKAIFGGREKVGMLEISKFLSPHFVKSG
        LNNLQNQTDKRQINCDAKLKAIFGGREKVGMLEISKFLSPHFVKSG
Subjt:  LNNLQNQTDKRQINCDAKLKAIFGGREKVGMLEISKFLSPHFVKSG

XP_038906873.1 upstream activation factor subunit spp27-like [Benincasa hispida]1.96e-6374.48Show/hide
Query:  MASGLSNGTRFFRGCKTLLDSLKPTTQAYSSTPAVSSKSKLKPPSAAVSGQKSKAAPKRQTNSSGGIMKSLKVSPTLAGFLGQSEISRADAIKQIWSYIK
        MASG  NGTRFFRGC+TL DSLK TTQAYSSTPAVS+K KLK  + AVSGQKS A PK+  N S GI KS  VSP LAGFLG SE SR++A+KQIW+YIK
Subjt:  MASGLSNGTRFFRGCKTLLDSLKPTTQAYSSTPAVSSKSKLKPPSAAVSGQKSKAAPKRQTNSSGGIMKSLKVSPTLAGFLGQSEISRADAIKQIWSYIK

Query:  LNNLQNQTDKRQINCDAKLKAIFGGREKVGMLEISKFLSPHFVKS
        LNNLQ+  DKRQINCD KLKAIF GREKVG LEI K L+PHFVKS
Subjt:  LNNLQNQTDKRQINCDAKLKAIFGGREKVGMLEISKFLSPHFVKS

TrEMBL top hitse value%identityAlignment
A0A0A0KCY9 SWIB domain-containing protein6.0e-5882.88Show/hide
Query:  MASGLSNGTRFFRGCKTLLDSLKPTTQAYSSTPAVSSKSKLKPPSAAVSGQKSKAAPKRQTNSSGGIMKSLKVSPTLAGFLGQSEISRADAIKQIWSYIK
        MASGLSNGTRFF+GC+TLLDSLK TTQAYSSTP VSSKS LKP +AAVSGQKSK APK+  N SGG++K+ KVSPTLAGFLGQSEI+R +A+KQIW YIK
Subjt:  MASGLSNGTRFFRGCKTLLDSLKPTTQAYSSTPAVSSKSKLKPPSAAVSGQKSKAAPKRQTNSSGGIMKSLKVSPTLAGFLGQSEISRADAIKQIWSYIK

Query:  LNNLQNQTDKRQINCDAKLKAIFGGREKVGMLEISKFLSPHFVKSG
        LNNLQN TDKRQI CDAKLKAIFGGREKVGMLEI KFLS HFVKSG
Subjt:  LNNLQNQTDKRQINCDAKLKAIFGGREKVGMLEISKFLSPHFVKSG

A0A1S3CBA0 protein TRI1-like4.3e-72100Show/hide
Query:  MASGLSNGTRFFRGCKTLLDSLKPTTQAYSSTPAVSSKSKLKPPSAAVSGQKSKAAPKRQTNSSGGIMKSLKVSPTLAGFLGQSEISRADAIKQIWSYIK
        MASGLSNGTRFFRGCKTLLDSLKPTTQAYSSTPAVSSKSKLKPPSAAVSGQKSKAAPKRQTNSSGGIMKSLKVSPTLAGFLGQSEISRADAIKQIWSYIK
Subjt:  MASGLSNGTRFFRGCKTLLDSLKPTTQAYSSTPAVSSKSKLKPPSAAVSGQKSKAAPKRQTNSSGGIMKSLKVSPTLAGFLGQSEISRADAIKQIWSYIK

Query:  LNNLQNQTDKRQINCDAKLKAIFGGREKVGMLEISKFLSPHFVKSG
        LNNLQNQTDKRQINCDAKLKAIFGGREKVGMLEISKFLSPHFVKSG
Subjt:  LNNLQNQTDKRQINCDAKLKAIFGGREKVGMLEISKFLSPHFVKSG

A0A5D3DMJ2 Protein TRI1-like4.3e-72100Show/hide
Query:  MASGLSNGTRFFRGCKTLLDSLKPTTQAYSSTPAVSSKSKLKPPSAAVSGQKSKAAPKRQTNSSGGIMKSLKVSPTLAGFLGQSEISRADAIKQIWSYIK
        MASGLSNGTRFFRGCKTLLDSLKPTTQAYSSTPAVSSKSKLKPPSAAVSGQKSKAAPKRQTNSSGGIMKSLKVSPTLAGFLGQSEISRADAIKQIWSYIK
Subjt:  MASGLSNGTRFFRGCKTLLDSLKPTTQAYSSTPAVSSKSKLKPPSAAVSGQKSKAAPKRQTNSSGGIMKSLKVSPTLAGFLGQSEISRADAIKQIWSYIK

Query:  LNNLQNQTDKRQINCDAKLKAIFGGREKVGMLEISKFLSPHFVKSG
        LNNLQNQTDKRQINCDAKLKAIFGGREKVGMLEISKFLSPHFVKSG
Subjt:  LNNLQNQTDKRQINCDAKLKAIFGGREKVGMLEISKFLSPHFVKSG

A0A6J1KEZ2 upstream activation factor subunit spp27-like2.8e-4771.03Show/hide
Query:  MASGLSNGTRFFRGCKTLLDSLKPTTQAYSSTPAVSSKSKLKPPSAAVSGQKSKAAPKRQTNSSGGIMKSLKVSPTLAGFLGQSEISRADAIKQIWSYIK
        MASGL+NGTR FRGC+TLLDSLK TTQAYSS  AVS K +LK   AA + +KS+A  K++ N SGGI KS++VSP LAGFLG SE SR++A+KQIWSYIK
Subjt:  MASGLSNGTRFFRGCKTLLDSLKPTTQAYSSTPAVSSKSKLKPPSAAVSGQKSKAAPKRQTNSSGGIMKSLKVSPTLAGFLGQSEISRADAIKQIWSYIK

Query:  LNNLQNQTDKRQINCDAKLKAIFGGREKVGMLEISKFLSPHFVKS
        LN+LQN  +KRQINCD KLKAIF GRE VG+LEI K LSPHFVKS
Subjt:  LNNLQNQTDKRQINCDAKLKAIFGGREKVGMLEISKFLSPHFVKS

A0A6J1KHF5 upstream activation factor subunit spp27-like1.2e-4771.72Show/hide
Query:  MASGLSNGTRFFRGCKTLLDSLKPTTQAYSSTPAVSSKSKLKPPSAAVSGQKSKAAPKRQTNSSGGIMKSLKVSPTLAGFLGQSEISRADAIKQIWSYIK
        MASGL+NGTR FRGC+TLLDSLK TTQAYSS  AVS K +LK   AA S +KS+A  K++ N SGGI KS++VSP LAGFLG SE SR++A+KQIWSYIK
Subjt:  MASGLSNGTRFFRGCKTLLDSLKPTTQAYSSTPAVSSKSKLKPPSAAVSGQKSKAAPKRQTNSSGGIMKSLKVSPTLAGFLGQSEISRADAIKQIWSYIK

Query:  LNNLQNQTDKRQINCDAKLKAIFGGREKVGMLEISKFLSPHFVKS
        LN+LQN  +KRQINCD KLKAIF GRE VG+LEI K LSPHFVKS
Subjt:  LNNLQNQTDKRQINCDAKLKAIFGGREKVGMLEISKFLSPHFVKS

SwissProt top hitse value%identityAlignment
O74503 Upstream activation factor subunit spp275.8e-1036.67Show/hide
Query:  GQKSKAAPKRQTNSSGGIMKSLKVSPTLAGFLGQSEISRADAIKQIWSYIKLNNLQNQTDKRQINCDAKLKAIFGGREKVGMLEISKFLS
        G++     + Q  ++  + K +K+SP LA FLG  ++SR   +K++W YIK ++LQ+  DKR I CD KLK++F   + + M  ++K+L+
Subjt:  GQKSKAAPKRQTNSSGGIMKSLKVSPTLAGFLGQSEISRADAIKQIWSYIKLNNLQNQTDKRQINCDAKLKAIFGGREKVGMLEISKFLS

Q05024 Protein TRI13.8e-0937.14Show/hide
Query:  SKSKLKPPSAAVSGQKSKAAPKRQTNSSGGIMKSLKVSPTLAGFLGQSEISRADAIKQIWSYIKLNNLQNQTDKRQINCDAKLKAIFGGREKVGMLEISK
        S  K K  S + S +K K      +NS    ++ + +S  L  FLG  E+ R   +K IW YIK ++LQN  D+R+I CD K++ IFG  +K+ M  ++K
Subjt:  SKSKLKPPSAAVSGQKSKAAPKRQTNSSGGIMKSLKVSPTLAGFLGQSEISRADAIKQIWSYIKLNNLQNQTDKRQINCDAKLKAIFGGREKVGMLEISK

Query:  FLSPH
         L+ H
Subjt:  FLSPH

Q08747 Upstream activation factor subunit UAF304.2e-0830.66Show/hide
Query:  RFFRGCKTLLDSLKPTTQAYSSTPAVSSKSKLKPPSAAVSGQKSKAAPKRQTNSSGGIMKSLKV--SPTLAGFLGQSEISRADAIKQIWSYIKLNNLQNQ
        RF R  + LL   +  T A   T  ++   +        S  K     K++   S   + + KV  S +LA  LG+ E++R + ++++W+YIK +NLQN 
Subjt:  RFFRGCKTLLDSLKPTTQAYSSTPAVSSKSKLKPPSAAVSGQKSKAAPKRQTNSSGGIMKSLKV--SPTLAGFLGQSEISRADAIKQIWSYIKLNNLQNQ

Query:  TDKRQINCDAKLKAIFGGREKVGMLEISKFLSPHFVK
         +K++I CD KL+ I G  +   M E+ K L+ H  +
Subjt:  TDKRQINCDAKLKAIFGGREKVGMLEISKFLSPHFVK

Arabidopsis top hitse value%identityAlignment
AT1G31760.1 SWIB/MDM2 domain superfamily protein4.4e-2151.04Show/hide
Query:  SKAAPKRQTNSSG---GIMKSLKVSPTLAGFLGQSEISRADAIKQIWSYIKLNNLQNQTDKRQINCDAKLKAIFGGREKVGMLEISKFLSPHFVKS
        SKAA       +G   GI K+  VS  LA F G+ E++R  A+K++W Y+KL+NLQN  +K++I+CD KLK IF G++KVG+ EI K LSPHF KS
Subjt:  SKAAPKRQTNSSG---GIMKSLKVSPTLAGFLGQSEISRADAIKQIWSYIKLNNLQNQTDKRQINCDAKLKAIFGGREKVGMLEISKFLSPHFVKS

AT2G14880.1 SWIB/MDM2 domain superfamily protein1.7e-1740.74Show/hide
Query:  TRFFRGCKTLLDSLKPTTQAYSSTPAVSSKSKLKPPSAAVSGQKSKAAPKRQTNSSGGIMKSLKVSPTLAGFLGQSEISRADAIKQIWSYIKLNNLQNQT
        T  FR   T L SL+     ++S PA    +KL+   A  S  +S            GIMK   VSP +   +   EI+R  A+K+IW+YIK ++LQ+  
Subjt:  TRFFRGCKTLLDSLKPTTQAYSSTPAVSSKSKLKPPSAAVSGQKSKAAPKRQTNSSGGIMKSLKVSPTLAGFLGQSEISRADAIKQIWSYIKLNNLQNQT

Query:  DKRQINCDAKLKAIFGGREKVGMLEISKFLSPHFV
        +KR+I CD KLK IF GR++VG LEI+K + PHF+
Subjt:  DKRQINCDAKLKAIFGGREKVGMLEISKFLSPHFV

AT2G35605.1 SWIB/MDM2 domain superfamily protein6.8e-2253.68Show/hide
Query:  KSKAAPKRQTNSSG-GIMKSLKVSPTLAGFLGQSEISRADAIKQIWSYIKLNNLQNQTDKRQINCDAKLKAIFGGREKVGMLEISKFLSPHFVKS
        K+ ++   +T   G GI+K + VS  LA F+G++E+SR  A+K+IW YIKLNNLQN  +KR+I CD +LK IF G++ VG LEISK LS HF KS
Subjt:  KSKAAPKRQTNSSG-GIMKSLKVSPTLAGFLGQSEISRADAIKQIWSYIKLNNLQNQTDKRQINCDAKLKAIFGGREKVGMLEISKFLSPHFVKS

AT3G03590.1 SWIB/MDM2 domain superfamily protein5.9e-2651.82Show/hide
Query:  FRGCKTLLDSLKPTTQAYSSTPAVSSKSK--LKPPSAAVSGQKSKA-APKRQTNSSGGIMKSLKVSPTLAGFLGQSEISRADAIKQIWSYIKLNNLQNQT
        FRG ++L   L P ++A SS  +  S  K   KP + A    K+K+ +P ++T  S GI K   VSP LA FLG  E SR DAIK IW+YIK ++LQN  
Subjt:  FRGCKTLLDSLKPTTQAYSSTPAVSSKSK--LKPPSAAVSGQKSKA-APKRQTNSSGGIMKSLKVSPTLAGFLGQSEISRADAIKQIWSYIKLNNLQNQT

Query:  DKRQINCDAKLKAIFGGREKVGMLEISKFLSPHFVKS
        DKR+I CD  LK IF G++KVG LEISK LSPHFVK+
Subjt:  DKRQINCDAKLKAIFGGREKVGMLEISKFLSPHFVKS

AT4G34290.1 SWIB/MDM2 domain superfamily protein6.2e-1539.34Show/hide
Query:  LKPTTQAYSSTPAVSSKSKLKPPSAAVSGQKSKAAPKRQTNSSGGIMKSLKVSPTLAGFLGQSEISRADAIKQIWSYIKLNNLQNQTDKRQINCDAKLKA
        L P++   S     + +      SAA +        K  T    GIMK   VS  +   +G  EI R  A+K+IW+YIK ++LQ+  +KR I CD KLK 
Subjt:  LKPTTQAYSSTPAVSSKSKLKPPSAAVSGQKSKAAPKRQTNSSGGIMKSLKVSPTLAGFLGQSEISRADAIKQIWSYIKLNNLQNQTDKRQINCDAKLKA

Query:  IFGGREKVGMLEISKFLSPHFV
        IF G+E+VG LEI+K + PHF+
Subjt:  IFGGREKVGMLEISKFLSPHFV


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCCTCAGGTCTTAGCAATGGCACCAGGTTCTTCAGAGGCTGCAAAACTCTCTTAGATTCTCTCAAACCCACCACTCAAGCTTACTCTTCTACTCCTGCGGTCTCTTC
CAAGAGTAAGCTAAAACCCCCAAGTGCCGCCGTTTCGGGCCAAAAGTCGAAAGCGGCACCAAAGAGACAGACGAATTCTTCGGGCGGGATTATGAAGTCCTTAAAAGTTT
CTCCGACTCTCGCTGGCTTCCTTGGCCAGTCCGAGATTTCGCGCGCTGATGCCATCAAGCAAATATGGTCGTACATCAAGCTGAATAACCTCCAGAACCAAACTGATAAG
AGGCAGATCAATTGTGATGCAAAGTTGAAGGCCATATTTGGTGGAAGAGAAAAAGTGGGAATGCTTGAGATTTCAAAATTTCTTTCCCCTCATTTTGTGAAATCTGGTTA
A
mRNA sequenceShow/hide mRNA sequence
AAGTTTCAGACTAAGTCGAGCGGAAGCGGTCAGAAACCCTAGCAGTTAACGTCGTCTTCATCGGAGCAAAATGGCCTCAGGTCTTAGCAATGGCACCAGGTTCTTCAGAG
GCTGCAAAACTCTCTTAGATTCTCTCAAACCCACCACTCAAGCTTACTCTTCTACTCCTGCGGTCTCTTCCAAGAGTAAGCTAAAACCCCCAAGTGCCGCCGTTTCGGGC
CAAAAGTCGAAAGCGGCACCAAAGAGACAGACGAATTCTTCGGGCGGGATTATGAAGTCCTTAAAAGTTTCTCCGACTCTCGCTGGCTTCCTTGGCCAGTCCGAGATTTC
GCGCGCTGATGCCATCAAGCAAATATGGTCGTACATCAAGCTGAATAACCTCCAGAACCAAACTGATAAGAGGCAGATCAATTGTGATGCAAAGTTGAAGGCCATATTTG
GTGGAAGAGAAAAAGTGGGAATGCTTGAGATTTCAAAATTTCTTTCCCCTCATTTTGTGAAATCTGGTTAACCTAAGCTTTCTGTGCATTCATTGCCTTAGCTGTTCTAA
TACTTCTCTAAACCTCTCTTCCAAATCCTTGTGATGTTTTGTTATGTTCTATTAGGTTTTGTTAGGTTTTGTTTGGTTTTGTTTGGCTGATCCTATGACATCATCTTCAC
CATTTGGTTTTACTCAGATTTAGGAAGAGGGGGTGTTTCTTGTTTAGACATTGTTGACTAATAGTACTTTTCATTAATTAAGGTACCTTTTTCAGAATTCGTAGTTTTTT
CTAGTGCAAATTTGTAGACTTAGGAAACCATTATATTCAATTTGAGAATTTAATTTGGATTATCTTGAAGCTAAAGCAGGTAGACAGAAGTTTTTCCTATTTCATATATA
CATAGATACATTTTGGAGAAGTAATGATCGTTGTGGAC
Protein sequenceShow/hide protein sequence
MASGLSNGTRFFRGCKTLLDSLKPTTQAYSSTPAVSSKSKLKPPSAAVSGQKSKAAPKRQTNSSGGIMKSLKVSPTLAGFLGQSEISRADAIKQIWSYIKLNNLQNQTDK
RQINCDAKLKAIFGGREKVGMLEISKFLSPHFVKSG