; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

IVF0021120 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0021120
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionRetrotransposon protein putative ty3-gypsy sub-class
Genome locationchr08:22133719..22134114
RNA-Seq ExpressionIVF0021120
SyntenyIVF0021120
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0033278.1 hypothetical protein E6C27_scaffold845G00800 [Cucumis melo var. makuwa]3.06e-1246.59Show/hide
Query:  SSSSSMRCNKVGRHLHLQSDATEAVVIFIFQYGVAKAIVIFIFNAAQQRRSSSSFLMLCSRGGRLLHLQCNTVETIIIFIFNTVATDR
        SSSS +RC++ G  LHL   A E V++FIF             +AAQQRRSSSS  M  SR G  LHL C   ET+I+FIF+     R
Subjt:  SSSSSMRCNKVGRHLHLQSDATEAVVIFIFQYGVAKAIVIFIFNAAQQRRSSSSFLMLCSRGGRLLHLQCNTVETIIIFIFNTVATDR

KAA0047505.1 hypothetical protein E6C27_scaffold498G001320 [Cucumis melo var. makuwa]1.02e-1644.22Show/hide
Query:  QPRGSSSS-SKRRSRGGRHLHLQYNTIEAL------------SSSSSMRCNKVGRHLHLQSDAT-EAVVIFIFQYGVAKAIVIFIFNAAQQRRSSSSFLM
        QPRG  SS S  RSR   HLHLQ    E +            SSSSSM C++   HL LQ     E  +    Q+   + I++FIFN AQQ+RSSSS  M
Subjt:  QPRGSSSS-SKRRSRGGRHLHLQYNTIEAL------------SSSSSMRCNKVGRHLHLQSDAT-EAVVIFIFQYGVAKAIVIFIFNAAQQRRSSSSFLM

Query:  LCSRGGRLLHLQCNTVETIIIFIFNTV---------ATDRIIIFIFN
          SR  R LHLQC   ETIIIFI N +         A + I+IF FN
Subjt:  LCSRGGRLLHLQCNTVETIIIFIFNTV---------ATDRIIIFIFN

KAA0060324.1 retrotransposon protein putative ty3-gypsy sub-class [Cucumis melo var. makuwa]6.19e-0956.92Show/hide
Query:  MLPQPRGSSSSSKRR--SRGGRHLHLQYNTIEALS-SSSSMRCNKVGRHLHLQSDATEAVVIFIF
        +L QPRGSSSSS     S+   HLHLQ +T E +  SSSSMRC +   HL+LQ DATE ++IFIF
Subjt:  MLPQPRGSSSSSKRR--SRGGRHLHLQYNTIEALS-SSSSMRCNKVGRHLHLQSDATEAVVIFIF

TYK21322.1 glial fibrillary acidic protein-like [Cucumis melo var. makuwa]8.83e-1040.91Show/hide
Query:  QPRGSSSSSKRR-SRGGRHLHLQYNTI-------------------EALSSSSSMRCNKVGRHLHLQSDATEAVVIFIFQYGVAKAIVIFIFNAAQQRRS
        +PRGSSSSS    S    +LHLQY  I                      SS SSMRC++   HLHL+  A EA++I IF               AQ R S
Subjt:  QPRGSSSSSKRR-SRGGRHLHLQYNTI-------------------EALSSSSSMRCNKVGRHLHLQSDATEAVVIFIFQYGVAKAIVIFIFNAAQQRRS

Query:  SSSFLMLCSRGGRLLHLQCNTVETIIIFIFNT
        SS   M  SRG   LHL+C  VE III IF+T
Subjt:  SSSFLMLCSRGGRLLHLQCNTVETIIIFIFNT

TYK26477.1 hypothetical protein E5676_scaffold313G00420 [Cucumis melo var. makuwa]9.82e-1253.26Show/hide
Query:  LPQPRGSSSSSKR-RSRGGRHLHLQYNTIEALSSSSSMRCNKVGRHLHLQSDATEAVVIFIFQYGVA---KAIVIFIFNAAQQRRSSSSFLM
        + QPRGSSSSS   RSR  RHLHLQ    E +     +  N +  HLHLQ DA EAVVIF F   V      +VIFIFN A  RRSSSS  M
Subjt:  LPQPRGSSSSSKR-RSRGGRHLHLQYNTIEALSSSSSMRCNKVGRHLHLQSDATEAVVIFIFQYGVA---KAIVIFIFNAAQQRRSSSSFLM

TrEMBL top hitse value%identityAlignment
A0A5A7SRV7 Uncharacterized protein3.5e-0936.36Show/hide
Query:  SSSSSMRCNKVGRHL--HLQSDATEAVVIFIFQY------------------GVAKAIVIFIFNAAQQRRSSSSFLMLCSRGGRLLHLQCNTVETIIIFI
        S SSSM C++   HL  HLQ  A + + IFIF +                     + I+IFIF+AAQQRRSSSS  + CSR G  LHL C   ET+I+FI
Subjt:  SSSSSMRCNKVGRHL--HLQSDATEAVVIFIFQY------------------GVAKAIVIFIFNAAQQRRSSSSFLMLCSRGGRLLHLQCNTVETIIIFI

Query:  FNTV-------------------------ATDRIIIFIFNVAQ
        F+                           A + +I+FIF+ AQ
Subjt:  FNTV-------------------------ATDRIIIFIFNVAQ

A0A5A7U1J1 Uncharacterized protein6.8e-1344.22Show/hide
Query:  QPRGS-SSSSKRRSRGGRHLHLQYNTIEAL------------SSSSSMRCNKVGRHLHLQSDAT-EAVVIFIFQYGVAKAIVIFIFNAAQQRRSSSSFLM
        QPRG  SS S  RSR   HLHLQ    E +            SSSSSM C++   HL LQ     E  +    Q+   + I++FIFN AQQ+RSSSS  M
Subjt:  QPRGS-SSSSKRRSRGGRHLHLQYNTIEAL------------SSSSSMRCNKVGRHLHLQSDAT-EAVVIFIFQYGVAKAIVIFIFNAAQQRRSSSSFLM

Query:  LCSRGGRLLHLQCNTVETIIIFIFNTV---------ATDRIIIFIFN
          SR  R LHLQC   ETIIIFI N +         A + I+IF FN
Subjt:  LCSRGGRLLHLQCNTVETIIIFIFNTV---------ATDRIIIFIFN

A0A5A7UZ51 Retrotransposon protein putative ty3-gypsy sub-class1.6e-0656.92Show/hide
Query:  MLPQPRGSSSSSKRR--SRGGRHLHLQYNTIEA-LSSSSSMRCNKVGRHLHLQSDATEAVVIFIF
        +L QPRGSSSSS     S+   HLHLQ +T E  + SSSSMRC +   HL+LQ DATE ++IFIF
Subjt:  MLPQPRGSSSSSKRR--SRGGRHLHLQYNTIEA-LSSSSSMRCNKVGRHLHLQSDATEAVVIFIF

A0A5D3DCM3 Glial fibrillary acidic protein-like3.3e-0741.67Show/hide
Query:  QPRGSSSSSKR-RSRGGRHLHLQYNTI-------------------EALSSSSSMRCNKVGRHLHLQSDATEAVVIFIFQYGVAKAIVIFIFNAAQQRRS
        +PRGSSSSS    S    +LHLQY  I                      SS SSMRC++   HLHL+  A E             AI+I IF  AQ R S
Subjt:  QPRGSSSSSKR-RSRGGRHLHLQYNTI-------------------EALSSSSSMRCNKVGRHLHLQSDATEAVVIFIFQYGVAKAIVIFIFNAAQQRRS

Query:  SSSFLMLCSRGGRLLHLQCNTVETIIIFIFNT
        SS   M  SRG   LHL+C  VE III IF+T
Subjt:  SSSFLMLCSRGGRLLHLQCNTVETIIIFIFNT

A0A5D3DRX7 Uncharacterized protein3.5e-0953.26Show/hide
Query:  LPQPRGSSSSSKR-RSRGGRHLHLQYNTIEALSSSSSMRCNKVGRHLHLQSDATEAVVIFIFQYGVA---KAIVIFIFNAAQQRRSSSSFLM
        + QPRGSSSSS   RSR  RHLHLQ    E +     +  N +  HLHLQ DA EAVVIF F   V      +VIFIFN A  RRSSSS  M
Subjt:  LPQPRGSSSSSKR-RSRGGRHLHLQYNTIEALSSSSSMRCNKVGRHLHLQSDATEAVVIFIFQYGVA---KAIVIFIFNAAQQRRSSSSFLM

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTGCCACAACCAAGAGGATCATCTTCATCTTCAAAGCGGCGCAGTAGAGGTGGTCGTCATCTTCATCTTCAATACAACACAATAGAGGCGTTGTCATCTTCATCTTC
AATGCGATGCAACAAAGTCGGTCGTCATCTTCATCTTCAATCGGATGCAACAGAGGCGGTCGTCATCTTTATCTTTCAATATGGTGTAGCAAAAGCGATCGTCATCTTCA
TCTTCAATGCGGCACAGCAGAGGCGGTCTTCATCTTCATTTTTAATGCTGTGTAGCAGAGGTGGTCGTCTTCTTCATCTTCAATGCAACACAGTAGAGACGATTATCATC
TTCATCTTCAACACGGTTGCAACCGATAGGATCATCATCTTCATCTTTAATGTCGCGCAACCATGA
mRNA sequenceShow/hide mRNA sequence
ATGTTGCCACAACCAAGAGGATCATCTTCATCTTCAAAGCGGCGCAGTAGAGGTGGTCGTCATCTTCATCTTCAATACAACACAATAGAGGCGTTGTCATCTTCATCTTC
AATGCGATGCAACAAAGTCGGTCGTCATCTTCATCTTCAATCGGATGCAACAGAGGCGGTCGTCATCTTTATCTTTCAATATGGTGTAGCAAAAGCGATCGTCATCTTCA
TCTTCAATGCGGCACAGCAGAGGCGGTCTTCATCTTCATTTTTAATGCTGTGTAGCAGAGGTGGTCGTCTTCTTCATCTTCAATGCAACACAGTAGAGACGATTATCATC
TTCATCTTCAACACGGTTGCAACCGATAGGATCATCATCTTCATCTTTAATGTCGCGCAACCATGA
Protein sequenceShow/hide protein sequence
MLPQPRGSSSSSKRRSRGGRHLHLQYNTIEALSSSSSMRCNKVGRHLHLQSDATEAVVIFIFQYGVAKAIVIFIFNAAQQRRSSSSFLMLCSRGGRLLHLQCNTVETIII
FIFNTVATDRIIIFIFNVAQP