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IVF0021148 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0021148
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionReverse transcriptase
Genome locationchr06:13157524..13158021
RNA-Seq ExpressionIVF0021148
SyntenyIVF0021148
Gene Ontology termsGO:0006259 - DNA metabolic process (biological process)
GO:0004518 - nuclease activity (molecular function)
GO:0005488 - binding (molecular function)
GO:0016779 - nucleotidyltransferase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0048434.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]4.00e-0972.92Show/hide
Query:  ACGSFLSPAPF-DFGRSSDLPEPRQPQRRGARSVAARRLSTEQSVVAP
        AC SFL P P  DF R  DLPEPRQP R GARS AARRL T+QSVVAP
Subjt:  ACGSFLSPAPF-DFGRSSDLPEPRQPQRRGARSVAARRLSTEQSVVAP

KAA0051740.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]1.26e-2268.35Show/hide
Query:  SSAACGSFLSPAPFDFGRSSDLPEPRQPQRRGARSVAARRLSTEQSVVAPSCVV------------LDRGCPVFKRFKP
        SS ACGSFL   PFDF R  DLPEPRQP+RRGARSVAARRLSTEQS +AP CVV            +DRGCPVFKRF+P
Subjt:  SSAACGSFLSPAPFDFGRSSDLPEPRQPQRRGARSVAARRLSTEQSVVAPSCVV------------LDRGCPVFKRFKP

KAA0051940.1 hypothetical protein E6C27_scaffold60G003970 [Cucumis melo var. makuwa]3.82e-0863.64Show/hide
Query:  FDFGRSSDLPEPRQPQRRGARSVAARRLSTEQSVVAPSCVVLDRGCPVFKRFKPI
        FDFGR S+LP+ RQP R GARS  ARRLST+QS VAP CVV     P F   KPI
Subjt:  FDFGRSSDLPEPRQPQRRGARSVAARRLSTEQSVVAPSCVVLDRGCPVFKRFKPI

TYK11555.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]1.26e-2268.35Show/hide
Query:  SSAACGSFLSPAPFDFGRSSDLPEPRQPQRRGARSVAARRLSTEQSVVAPSCVV------------LDRGCPVFKRFKP
        SS ACGSFL   PFDF R  DLPEPRQP+RRGARSVAARRLSTEQS +AP CVV            +DRGCPVFKRF+P
Subjt:  SSAACGSFLSPAPFDFGRSSDLPEPRQPQRRGARSVAARRLSTEQSVVAPSCVV------------LDRGCPVFKRFKP

TYK12219.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]3.62e-0863.64Show/hide
Query:  FDFGRSSDLPEPRQPQRRGARSVAARRLSTEQSVVAPSCVVLDRGCPVFKRFKPI
        FDFGR S+LP+ RQP R GARS  ARRLST+QS VAP CVV     P F   KPI
Subjt:  FDFGRSSDLPEPRQPQRRGARSVAARRLSTEQSVVAPSCVVLDRGCPVFKRFKPI

TrEMBL top hitse value%identityAlignment
A0A5A7U9A2 Reverse transcriptase6.4e-1968.35Show/hide
Query:  SSAACGSFLSPAPFDFGRSSDLPEPRQPQRRGARSVAARRLSTEQSVVAPSCVV------------LDRGCPVFKRFKP
        SS ACGSFL   PFDF R  DLPEPRQP+RRGARSVAARRLSTEQS +AP CVV            +DRGCPVFKRF+P
Subjt:  SSAACGSFLSPAPFDFGRSSDLPEPRQPQRRGARSVAARRLSTEQSVVAPSCVV------------LDRGCPVFKRFKP

A0A5A7U9T8 Uncharacterized protein2.8e-0662.71Show/hide
Query:  PAP-FDFGRSSDLPEPRQPQRRGARSVAARRLSTEQSVVAPSCVVLDRGCPVFKRFKPI
        P P FDFGR S+LP+ RQP R GARS  ARRLST+QS VAP CVV     P F   KPI
Subjt:  PAP-FDFGRSSDLPEPRQPQRRGARSVAARRLSTEQSVVAPSCVVLDRGCPVFKRFKPI

A0A5D3CJ03 Reverse transcriptase6.4e-1968.35Show/hide
Query:  SSAACGSFLSPAPFDFGRSSDLPEPRQPQRRGARSVAARRLSTEQSVVAPSCVV------------LDRGCPVFKRFKP
        SS ACGSFL   PFDF R  DLPEPRQP+RRGARSVAARRLSTEQS +AP CVV            +DRGCPVFKRF+P
Subjt:  SSAACGSFLSPAPFDFGRSSDLPEPRQPQRRGARSVAARRLSTEQSVVAPSCVV------------LDRGCPVFKRFKP

A0A5D3CPH9 Ty3-gypsy retrotransposon protein2.8e-0662.71Show/hide
Query:  PAP-FDFGRSSDLPEPRQPQRRGARSVAARRLSTEQSVVAPSCVVLDRGCPVFKRFKPI
        P P FDFGR S+LP+ RQP R GARS  ARRLST+QS VAP CVV     P F   KPI
Subjt:  PAP-FDFGRSSDLPEPRQPQRRGARSVAARRLSTEQSVVAPSCVVLDRGCPVFKRFKPI

A0A5D3DYA5 Ty3-gypsy retrotransposon protein4.3e-0768.63Show/hide
Query:  SSAACGSFLSPAP-FDFGRSSDLPEPRQPQRRGARSVAARRLSTEQSVVAP
        ++ AC SFL P P  DF R  DLPEPRQP R GARS AARRL T+QSVVAP
Subjt:  SSAACGSFLSPAP-FDFGRSSDLPEPRQPQRRGARSVAARRLSTEQSVVAP

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCGTCAGCGGCGTGTGGCAGCTTCCTCTCCCCAGCCCCTTTCGACTTCGGTCGGTCTTCAGATCTGCCAGAACCGCGACAACCACAGAGACGCGGGGCTAGATCTGT
CGCCGCTCGTCGTCTCTCTACGGAGCAGTCGGTCGTCGCTCCTTCGTGCGTCGTTCTCGACCGTGGTTGCCCCGTCTTCAAGCGATTCAAACCGATCCAACCCACTGACC
CGACCCGAGCCATCTTCTATCAATCTGATCTGCGAAGCCAAGCCAAGCCGAGCCACGAGCTGCCCGCGAGTCGAAGACTGAGCCGAGCCGTGAGCCGAAGATTGAGCCGA
GCCGCAAGCCGAGTCAAGTCGAGGACTGACCAAAGACTGAGTCGAGTTGCGCCGCGAGCCGAAGATTGA
mRNA sequenceShow/hide mRNA sequence
ATGTCGTCAGCGGCGTGTGGCAGCTTCCTCTCCCCAGCCCCTTTCGACTTCGGTCGGTCTTCAGATCTGCCAGAACCGCGACAACCACAGAGACGCGGGGCTAGATCTGT
CGCCGCTCGTCGTCTCTCTACGGAGCAGTCGGTCGTCGCTCCTTCGTGCGTCGTTCTCGACCGTGGTTGCCCCGTCTTCAAGCGATTCAAACCGATCCAACCCACTGACC
CGACCCGAGCCATCTTCTATCAATCTGATCTGCGAAGCCAAGCCAAGCCGAGCCACGAGCTGCCCGCGAGTCGAAGACTGAGCCGAGCCGTGAGCCGAAGATTGAGCCGA
GCCGCAAGCCGAGTCAAGTCGAGGACTGACCAAAGACTGAGTCGAGTTGCGCCGCGAGCCGAAGATTGA
Protein sequenceShow/hide protein sequence
MSSAACGSFLSPAPFDFGRSSDLPEPRQPQRRGARSVAARRLSTEQSVVAPSCVVLDRGCPVFKRFKPIQPTDPTRAIFYQSDLRSQAKPSHELPASRRLSRAVSRRLSR
AASRVKSRTDQRLSRVAPRAED