CuGenDBv2

Gene ID	IVF0021211
Organism	Cucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	DNA-directed RNA polymerase III subunit rpc4-like
Genome location	chr07:21852072..21857008
RNA-Seq Expression	IVF0021211
Synteny	IVF0021211
Gene Ontology terms	GO:0006383 - transcription by RNA polymerase III (biological process) GO:0006412 - translation (biological process) GO:0005666 - RNA polymerase III complex (cellular component) GO:0005829 - cytosol (cellular component) GO:0005840 - ribosome (cellular component) GO:0003677 - DNA binding (molecular function) GO:0003729 - mRNA binding (molecular function) GO:0003735 - structural constituent of ribosome (molecular function) GO:0003899 - DNA-directed 5'-3' RNA polymerase activity (molecular function)
InterPro domains	IPR007811 - DNA-directed RNA polymerase III subunit RPC4

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAA0044650.1 DNA-directed RNA polymerase III subunit rpc4-like [Cucumis melo var. makuwa]

2.21e-233

99.4

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Query:  MKNQDSSPPRRKVKFAPKSSQRRRPPPPPVQKTEDEDGEGYVAQTRYLLRRANENLGKRANKVEKKSSVQVAFGPGAESTSSSIRTYGVPKVENGSRKND
        MKNQDSSPPRRKVKFAPKSSQRRRPPPPPVQKTEDEDGEGYVAQTRYLLRRANENLGKRANKVE+KSSVQVAFGPGAESTSSSIRTYGVPKVENGSRKND
Subjt:  MKNQDSSPPRRKVKFAPKSSQRRRPPPPPVQKTEDEDGEGYVAQTRYLLRRANENLGKRANKVEKKSSVQVAFGPGAESTSSSIRTYGVPKVENGSRKND

Query:  IEPEVDEDEEFVLPVAMDVNEDGKFFDKKTKDGIAESSSSAMVTKTKRDYKEPWDYQNSYYPTTLPLRMPYSGDHERLDEAEFGQDAMNREYDENSVIPA
        IEPEVDEDEEFVLPVAMDVNEDGKFFDKKTKDGIAESSSSAMVTKTKRDYKEPWDYQNSYYPTTLPLRMPYSGD ERLDEAEFGQDAMNREYDENSVIPA
Subjt:  IEPEVDEDEEFVLPVAMDVNEDGKFFDKKTKDGIAESSSSAMVTKTKRDYKEPWDYQNSYYPTTLPLRMPYSGDHERLDEAEFGQDAMNREYDENSVIPA

Query:  LDLGLQDENTENTKYFFQLPARLPLPKQSSTATGKEKVGNSRSSNSTSSSDLDDLKKLSAGCMGKLLIYKSGAIKLRLGDILYDVSSGSDCSFLQHVVAI
        LDLGLQDENTENTKYFFQLPARLPLPKQSSTATGKEKVGNSRSSNSTSSSDLDDLKKLSAGCMGKLLIYKSGAIKLRLGDILYDVSSGSDCSFLQHVVAI
Subjt:  LDLGLQDENTENTKYFFQLPARLPLPKQSSTATGKEKVGNSRSSNSTSSSDLDDLKKLSAGCMGKLLIYKSGAIKLRLGDILYDVSSGSDCSFLQHVVAI

Query:  NTEKGQCCDLGDIGKRVVVTPDISSLLNSVTNLR
        NTEKGQCCDLGDIGKRVVVTPDISSLLNSVTNLR
Subjt:  NTEKGQCCDLGDIGKRVVVTPDISSLLNSVTNLR

TYK16939.1 DNA-directed RNA polymerase III subunit rpc4-like [Cucumis melo var. makuwa]

9.98e-221

100

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Query:  MKNQDSSPPRRKVKFAPKSSQRRRPPPPPVQKTEDEDGEGYVAQTRYLLRRANENLGKRANKVEKKSSVQVAFGPGAESTSSSIRTYGVPKVENGSRKND
        MKNQDSSPPRRKVKFAPKSSQRRRPPPPPVQKTEDEDGEGYVAQTRYLLRRANENLGKRANKVEKKSSVQVAFGPGAESTSSSIRTYGVPKVENGSRKND
Subjt:  MKNQDSSPPRRKVKFAPKSSQRRRPPPPPVQKTEDEDGEGYVAQTRYLLRRANENLGKRANKVEKKSSVQVAFGPGAESTSSSIRTYGVPKVENGSRKND

Query:  IEPEVDEDEEFVLPVAMDVNEDGKFFDKKTKDGIAESSSSAMVTKTKRDYKEPWDYQNSYYPTTLPLRMPYSGDHERLDEAEFGQDAMNREYDENSVIPA
        IEPEVDEDEEFVLPVAMDVNEDGKFFDKKTKDGIAESSSSAMVTKTKRDYKEPWDYQNSYYPTTLPLRMPYSGDHERLDEAEFGQDAMNREYDENSVIPA
Subjt:  IEPEVDEDEEFVLPVAMDVNEDGKFFDKKTKDGIAESSSSAMVTKTKRDYKEPWDYQNSYYPTTLPLRMPYSGDHERLDEAEFGQDAMNREYDENSVIPA

Query:  LDLGLQDENTENTKYFFQLPARLPLPKQSSTATGKEKVGNSRSSNSTSSSDLDDLKKLSAGCMGKLLIYKSGAIKLRLGDILYDVSSGSDCSFLQHVVAI
        LDLGLQDENTENTKYFFQLPARLPLPKQSSTATGKEKVGNSRSSNSTSSSDLDDLKKLSAGCMGKLLIYKSGAIKLRLGDILYDVSSGSDCSFLQHVVAI
Subjt:  LDLGLQDENTENTKYFFQLPARLPLPKQSSTATGKEKVGNSRSSNSTSSSDLDDLKKLSAGCMGKLLIYKSGAIKLRLGDILYDVSSGSDCSFLQHVVAI

Query:  NTEKGQCCDLGDIGKRVV
        NTEKGQCCDLGDIGKRVV
Subjt:  NTEKGQCCDLGDIGKRVV

XP_004146914.1 DNA-directed RNA polymerase III subunit rpc4 [Cucumis sativus]

2.17e-224

95.81

Show/hide

Query:  MKNQDSSPPRRKVKFAPKSSQRRRPPPPPVQKTEDEDGEGYVAQTRYLLRRANENLGKRANKVEKKSSVQVAFGPGAESTSSSIRTYGVPKVENGSRKND
        MKN D SPPRRKVKFAPKSSQR+RPPPPPVQKTEDEDGEGYVAQTRYLLRRANENLGKRANKVEKKSSVQVAFGPGAESTSSSIRTYGVPKVENGSRKND
Subjt:  MKNQDSSPPRRKVKFAPKSSQRRRPPPPPVQKTEDEDGEGYVAQTRYLLRRANENLGKRANKVEKKSSVQVAFGPGAESTSSSIRTYGVPKVENGSRKND

Query:  IEPEVDEDEEFVLPVAMDVNEDGKFFDKKTKDGIAESSSSAMVTKTKRDYKEPWDYQNSYYPTTLPLRMPYSGDHERLDEAEFGQDAMNREYDENSVIPA
        IEPEVDEDEEFVLPVA DVNEDGK+FDKKTKDGI ESSSSAM TKTKRDYKEPWDYQNSYYPTTLPLRMPYSGD ERLDEAEFGQD MNREYDENSVIPA
Subjt:  IEPEVDEDEEFVLPVAMDVNEDGKFFDKKTKDGIAESSSSAMVTKTKRDYKEPWDYQNSYYPTTLPLRMPYSGDHERLDEAEFGQDAMNREYDENSVIPA

Query:  LDLGLQDENTENTKYFFQLPARLPLPKQSSTATGKEKVGNSRSSNSTSSSDLDDLKKLSAGCMGKLLIYKSGAIKLRLGDILYDVSSGSDCSFLQHVVAI
        LDLGL DENTE+TKYFFQLPARLPLPKQSSTATGKEKVGNSRSSNSTSSSDLDDLKKLSAGCMGKLLIYKSGAIKLRLGDILYDVSSGS+CSFLQHVVAI
Subjt:  LDLGLQDENTENTKYFFQLPARLPLPKQSSTATGKEKVGNSRSSNSTSSSDLDDLKKLSAGCMGKLLIYKSGAIKLRLGDILYDVSSGSDCSFLQHVVAI

Query:  NTEKGQCCDLGDIGKRVVVTPDISSLLNSVTNLR
        NTE+GQCCDLGDIG RVVVTPDISSLLNSVTNLR
Subjt:  NTEKGQCCDLGDIGKRVVVTPDISSLLNSVTNLR

XP_008453902.1 PREDICTED: DNA-directed RNA polymerase III subunit rpc4-like [Cucumis melo]

2.30e-235

100

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Query:  MKNQDSSPPRRKVKFAPKSSQRRRPPPPPVQKTEDEDGEGYVAQTRYLLRRANENLGKRANKVEKKSSVQVAFGPGAESTSSSIRTYGVPKVENGSRKND
        MKNQDSSPPRRKVKFAPKSSQRRRPPPPPVQKTEDEDGEGYVAQTRYLLRRANENLGKRANKVEKKSSVQVAFGPGAESTSSSIRTYGVPKVENGSRKND
Subjt:  MKNQDSSPPRRKVKFAPKSSQRRRPPPPPVQKTEDEDGEGYVAQTRYLLRRANENLGKRANKVEKKSSVQVAFGPGAESTSSSIRTYGVPKVENGSRKND

Query:  IEPEVDEDEEFVLPVAMDVNEDGKFFDKKTKDGIAESSSSAMVTKTKRDYKEPWDYQNSYYPTTLPLRMPYSGDHERLDEAEFGQDAMNREYDENSVIPA
        IEPEVDEDEEFVLPVAMDVNEDGKFFDKKTKDGIAESSSSAMVTKTKRDYKEPWDYQNSYYPTTLPLRMPYSGDHERLDEAEFGQDAMNREYDENSVIPA
Subjt:  IEPEVDEDEEFVLPVAMDVNEDGKFFDKKTKDGIAESSSSAMVTKTKRDYKEPWDYQNSYYPTTLPLRMPYSGDHERLDEAEFGQDAMNREYDENSVIPA

Query:  LDLGLQDENTENTKYFFQLPARLPLPKQSSTATGKEKVGNSRSSNSTSSSDLDDLKKLSAGCMGKLLIYKSGAIKLRLGDILYDVSSGSDCSFLQHVVAI
        LDLGLQDENTENTKYFFQLPARLPLPKQSSTATGKEKVGNSRSSNSTSSSDLDDLKKLSAGCMGKLLIYKSGAIKLRLGDILYDVSSGSDCSFLQHVVAI
Subjt:  LDLGLQDENTENTKYFFQLPARLPLPKQSSTATGKEKVGNSRSSNSTSSSDLDDLKKLSAGCMGKLLIYKSGAIKLRLGDILYDVSSGSDCSFLQHVVAI

Query:  NTEKGQCCDLGDIGKRVVVTPDISSLLNSVTNLR
        NTEKGQCCDLGDIGKRVVVTPDISSLLNSVTNLR
Subjt:  NTEKGQCCDLGDIGKRVVVTPDISSLLNSVTNLR

XP_038879339.1 DNA-directed RNA polymerase III subunit rpc4-like [Benincasa hispida]

8.33e-201

87.09

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Query:  MKNQDSSPPRRKVKFAPKSSQRRRPPPPPVQKTEDEDGEGYVAQTRYLLRRANENLGKRANKVEKKSSVQVAFGPGAESTSSSIRTYGVPKVENGSRKND
        MKN DSSPPRRKVKFAPKS+ RRRPPP  VQK EDEDG+GYVAQTRYLLRRA ENLGKR NKV++KSSVQVAFGPGA STSSSIRTYGVPKVEN SRKND
Subjt:  MKNQDSSPPRRKVKFAPKSSQRRRPPPPPVQKTEDEDGEGYVAQTRYLLRRANENLGKRANKVEKKSSVQVAFGPGAESTSSSIRTYGVPKVENGSRKND

Query:  IEPEVDEDEEFVLPVAMDVNEDGKFFDKKTKDGIAESSSSAMVTKTKRDYKEPWDYQNSYYPTTLPLRMPYSGDHERLDEAEFGQDAMNREYDENSVIPA
        IEP+VDEDEEF+LP+ MDV E+GK FDKKTKDGIAESSSSA+VTKTK+DYKEPWDY NS YPTTLP+RMPYSGD E+LDEAEFGQDA +REYDE+SVIPA
Subjt:  IEPEVDEDEEFVLPVAMDVNEDGKFFDKKTKDGIAESSSSAMVTKTKRDYKEPWDYQNSYYPTTLPLRMPYSGDHERLDEAEFGQDAMNREYDENSVIPA

Query:  LDLGLQDENTENTKYFFQLPARLPLPKQSSTATGKEKVGNSRSSNSTSSSDLDDLKKLSAGCMGKLLIYKSGAIKLRLGDILYDVSSGSDCSFLQHVVAI
        LDLGL DE TENTKYFFQLPARLPLPKQSSTATGKEKVGN RSS S  SS+L DLKKLSAGCMGKLLIYKSGAIKLRLGD LYDVSSGSDCSFLQHVVAI
Subjt:  LDLGLQDENTENTKYFFQLPARLPLPKQSSTATGKEKVGNSRSSNSTSSSDLDDLKKLSAGCMGKLLIYKSGAIKLRLGDILYDVSSGSDCSFLQHVVAI

Query:  NTEKGQCCDLGDIGKRVVVTPDISSLLNSVTNL
        NT++GQCCDLGDIGKRV+VTPDISSLLNS+TNL
Subjt:  NTEKGQCCDLGDIGKRVVVTPDISSLLNSVTNL

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KZ61 Uncharacterized protein

8.0e-175

95.81

Show/hide

Query:  MKNQDSSPPRRKVKFAPKSSQRRRPPPPPVQKTEDEDGEGYVAQTRYLLRRANENLGKRANKVEKKSSVQVAFGPGAESTSSSIRTYGVPKVENGSRKND
        MKN D SPPRRKVKFAPKSSQR+RPPPPPVQKTEDEDGEGYVAQTRYLLRRANENLGKRANKVEKKSSVQVAFGPGAESTSSSIRTYGVPKVENGSRKND
Subjt:  MKNQDSSPPRRKVKFAPKSSQRRRPPPPPVQKTEDEDGEGYVAQTRYLLRRANENLGKRANKVEKKSSVQVAFGPGAESTSSSIRTYGVPKVENGSRKND

Query:  IEPEVDEDEEFVLPVAMDVNEDGKFFDKKTKDGIAESSSSAMVTKTKRDYKEPWDYQNSYYPTTLPLRMPYSGDHERLDEAEFGQDAMNREYDENSVIPA
        IEPEVDEDEEFVLPVA DVNEDGK+FDKKTKDGI ESSSSAM TKTKRDYKEPWDYQNSYYPTTLPLRMPYSGD ERLDEAEFGQD MNREYDENSVIPA
Subjt:  IEPEVDEDEEFVLPVAMDVNEDGKFFDKKTKDGIAESSSSAMVTKTKRDYKEPWDYQNSYYPTTLPLRMPYSGDHERLDEAEFGQDAMNREYDENSVIPA

Query:  LDLGLQDENTENTKYFFQLPARLPLPKQSSTATGKEKVGNSRSSNSTSSSDLDDLKKLSAGCMGKLLIYKSGAIKLRLGDILYDVSSGSDCSFLQHVVAI
        LDLGL DENTE+TKYFFQLPARLPLPKQSSTATGKEKVGNSRSSNSTSSSDLDDLKKLSAGCMGKLLIYKSGAIKLRLGDILYDVSSGS+CSFLQHVVAI
Subjt:  LDLGLQDENTENTKYFFQLPARLPLPKQSSTATGKEKVGNSRSSNSTSSSDLDDLKKLSAGCMGKLLIYKSGAIKLRLGDILYDVSSGSDCSFLQHVVAI

Query:  NTEKGQCCDLGDIGKRVVVTPDISSLLNSVTNLR
        NTE+GQCCDLGDIG RVVVTPDISSLLNSVTNLR
Subjt:  NTEKGQCCDLGDIGKRVVVTPDISSLLNSVTNLR

A0A1S3BYJ9 DNA-directed RNA polymerase III subunit rpc4-like

3.6e-183

100

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Query:  MKNQDSSPPRRKVKFAPKSSQRRRPPPPPVQKTEDEDGEGYVAQTRYLLRRANENLGKRANKVEKKSSVQVAFGPGAESTSSSIRTYGVPKVENGSRKND
        MKNQDSSPPRRKVKFAPKSSQRRRPPPPPVQKTEDEDGEGYVAQTRYLLRRANENLGKRANKVEKKSSVQVAFGPGAESTSSSIRTYGVPKVENGSRKND
Subjt:  MKNQDSSPPRRKVKFAPKSSQRRRPPPPPVQKTEDEDGEGYVAQTRYLLRRANENLGKRANKVEKKSSVQVAFGPGAESTSSSIRTYGVPKVENGSRKND

Query:  IEPEVDEDEEFVLPVAMDVNEDGKFFDKKTKDGIAESSSSAMVTKTKRDYKEPWDYQNSYYPTTLPLRMPYSGDHERLDEAEFGQDAMNREYDENSVIPA
        IEPEVDEDEEFVLPVAMDVNEDGKFFDKKTKDGIAESSSSAMVTKTKRDYKEPWDYQNSYYPTTLPLRMPYSGDHERLDEAEFGQDAMNREYDENSVIPA
Subjt:  IEPEVDEDEEFVLPVAMDVNEDGKFFDKKTKDGIAESSSSAMVTKTKRDYKEPWDYQNSYYPTTLPLRMPYSGDHERLDEAEFGQDAMNREYDENSVIPA

Query:  LDLGLQDENTENTKYFFQLPARLPLPKQSSTATGKEKVGNSRSSNSTSSSDLDDLKKLSAGCMGKLLIYKSGAIKLRLGDILYDVSSGSDCSFLQHVVAI
        LDLGLQDENTENTKYFFQLPARLPLPKQSSTATGKEKVGNSRSSNSTSSSDLDDLKKLSAGCMGKLLIYKSGAIKLRLGDILYDVSSGSDCSFLQHVVAI
Subjt:  LDLGLQDENTENTKYFFQLPARLPLPKQSSTATGKEKVGNSRSSNSTSSSDLDDLKKLSAGCMGKLLIYKSGAIKLRLGDILYDVSSGSDCSFLQHVVAI

Query:  NTEKGQCCDLGDIGKRVVVTPDISSLLNSVTNLR
        NTEKGQCCDLGDIGKRVVVTPDISSLLNSVTNLR
Subjt:  NTEKGQCCDLGDIGKRVVVTPDISSLLNSVTNLR

A0A5A7TN83 DNA-directed RNA polymerase III subunit rpc4-like

1.2e-181

99.4

Show/hide

Query:  MKNQDSSPPRRKVKFAPKSSQRRRPPPPPVQKTEDEDGEGYVAQTRYLLRRANENLGKRANKVEKKSSVQVAFGPGAESTSSSIRTYGVPKVENGSRKND
        MKNQDSSPPRRKVKFAPKSSQRRRPPPPPVQKTEDEDGEGYVAQTRYLLRRANENLGKRANKVE+KSSVQVAFGPGAESTSSSIRTYGVPKVENGSRKND
Subjt:  MKNQDSSPPRRKVKFAPKSSQRRRPPPPPVQKTEDEDGEGYVAQTRYLLRRANENLGKRANKVEKKSSVQVAFGPGAESTSSSIRTYGVPKVENGSRKND

Query:  IEPEVDEDEEFVLPVAMDVNEDGKFFDKKTKDGIAESSSSAMVTKTKRDYKEPWDYQNSYYPTTLPLRMPYSGDHERLDEAEFGQDAMNREYDENSVIPA
        IEPEVDEDEEFVLPVAMDVNEDGKFFDKKTKDGIAESSSSAMVTKTKRDYKEPWDYQNSYYPTTLPLRMPYSGD ERLDEAEFGQDAMNREYDENSVIPA
Subjt:  IEPEVDEDEEFVLPVAMDVNEDGKFFDKKTKDGIAESSSSAMVTKTKRDYKEPWDYQNSYYPTTLPLRMPYSGDHERLDEAEFGQDAMNREYDENSVIPA

Query:  LDLGLQDENTENTKYFFQLPARLPLPKQSSTATGKEKVGNSRSSNSTSSSDLDDLKKLSAGCMGKLLIYKSGAIKLRLGDILYDVSSGSDCSFLQHVVAI
        LDLGLQDENTENTKYFFQLPARLPLPKQSSTATGKEKVGNSRSSNSTSSSDLDDLKKLSAGCMGKLLIYKSGAIKLRLGDILYDVSSGSDCSFLQHVVAI
Subjt:  LDLGLQDENTENTKYFFQLPARLPLPKQSSTATGKEKVGNSRSSNSTSSSDLDDLKKLSAGCMGKLLIYKSGAIKLRLGDILYDVSSGSDCSFLQHVVAI

Query:  NTEKGQCCDLGDIGKRVVVTPDISSLLNSVTNLR
        NTEKGQCCDLGDIGKRVVVTPDISSLLNSVTNLR
Subjt:  NTEKGQCCDLGDIGKRVVVTPDISSLLNSVTNLR

A0A5D3D2X2 Ribosomal protein L15

2.3e-174

100

Show/hide

Query:  MKNQDSSPPRRKVKFAPKSSQRRRPPPPPVQKTEDEDGEGYVAQTRYLLRRANENLGKRANKVEKKSSVQVAFGPGAESTSSSIRTYGVPKVENGSRKND
        MKNQDSSPPRRKVKFAPKSSQRRRPPPPPVQKTEDEDGEGYVAQTRYLLRRANENLGKRANKVEKKSSVQVAFGPGAESTSSSIRTYGVPKVENGSRKND
Subjt:  MKNQDSSPPRRKVKFAPKSSQRRRPPPPPVQKTEDEDGEGYVAQTRYLLRRANENLGKRANKVEKKSSVQVAFGPGAESTSSSIRTYGVPKVENGSRKND

Query:  IEPEVDEDEEFVLPVAMDVNEDGKFFDKKTKDGIAESSSSAMVTKTKRDYKEPWDYQNSYYPTTLPLRMPYSGDHERLDEAEFGQDAMNREYDENSVIPA
        IEPEVDEDEEFVLPVAMDVNEDGKFFDKKTKDGIAESSSSAMVTKTKRDYKEPWDYQNSYYPTTLPLRMPYSGDHERLDEAEFGQDAMNREYDENSVIPA
Subjt:  IEPEVDEDEEFVLPVAMDVNEDGKFFDKKTKDGIAESSSSAMVTKTKRDYKEPWDYQNSYYPTTLPLRMPYSGDHERLDEAEFGQDAMNREYDENSVIPA

Query:  LDLGLQDENTENTKYFFQLPARLPLPKQSSTATGKEKVGNSRSSNSTSSSDLDDLKKLSAGCMGKLLIYKSGAIKLRLGDILYDVSSGSDCSFLQHVVAI
        LDLGLQDENTENTKYFFQLPARLPLPKQSSTATGKEKVGNSRSSNSTSSSDLDDLKKLSAGCMGKLLIYKSGAIKLRLGDILYDVSSGSDCSFLQHVVAI
Subjt:  LDLGLQDENTENTKYFFQLPARLPLPKQSSTATGKEKVGNSRSSNSTSSSDLDDLKKLSAGCMGKLLIYKSGAIKLRLGDILYDVSSGSDCSFLQHVVAI

Query:  NTEKGQCCDLGDIGKRVV
        NTEKGQCCDLGDIGKRVV
Subjt:  NTEKGQCCDLGDIGKRVV

A0A6J1E8A8 DNA-directed RNA polymerase III subunit rpc4-like

2.1e-130

76.12

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Query:  MKNQDSSPPRRKVKFAPKSSQRRRPPPPPVQKTEDEDGEGYVAQTRYLLRRANENLGKRANKVEKKSSVQVAFGPGAEST--SSSIRTYGVPKVENGSRK
        MKN D SPPRRK+KFAPKS+ RRRPPP P  KTEDED  G VAQTRYLLRRA ENLGKR NKVEKKSSVQVAFGPGA S   SSSIRTYGVPK+ N SRK
Subjt:  MKNQDSSPPRRKVKFAPKSSQRRRPPPPPVQKTEDEDGEGYVAQTRYLLRRANENLGKRANKVEKKSSVQVAFGPGAEST--SSSIRTYGVPKVENGSRK

Query:  NDIEPEVDEDEEFVLPVAMDVNEDGKFFDKKTKDGIAESSSSAMVTKTKRDYKEPWDYQNSYYPTTLPLRMPYSGDHERLDEAEFGQDAMNREYDENSVI
         DIEPE  EDEE +LP  MD  E GK  ++KT+D           TK  +DYKEPWDY NSYYPTTLPLRMPYSGD E LDEAEFGQD M+REYDENS I
Subjt:  NDIEPEVDEDEEFVLPVAMDVNEDGKFFDKKTKDGIAESSSSAMVTKTKRDYKEPWDYQNSYYPTTLPLRMPYSGDHERLDEAEFGQDAMNREYDENSVI

Query:  PALDLGLQDENTENTKYFFQLPARLPLPKQSSTATGKEKVGNSRSSNSTSSSDLDDLKKLSAGCMGKLLIYKSGAIKLRLGDILYDVSSGSDCSFLQHVV
        PALDLGL DEN+ENT+YFFQLPA LP PK+SST+TGKEKVGN RSS ST+SS+L DL+ L  G MGKLLIYKSGA+KLRLGD LYDVSSG DCSFLQHVV
Subjt:  PALDLGLQDENTENTKYFFQLPARLPLPKQSSTATGKEKVGNSRSSNSTSSSDLDDLKKLSAGCMGKLLIYKSGAIKLRLGDILYDVSSGSDCSFLQHVV

Query:  AINTEKGQCCDLGDIGKRVVVTPDISSLLNSVTNL
        AINT+KGQCCDLG+IGKRVVVTPDI SLLNS+T+L
Subjt:  AINTEKGQCCDLGDIGKRVVVTPDISSLLNSVTNL

SwissProt top hits

e value

%identity

Alignment

O74857 DNA-directed RNA polymerase III subunit rpc4

4.4e-05

25.18

Show/hide

Query:  DENTENTKYFFQLPARLPL--------PKQSSTATGKEKVGNSR--------SSNSTSSSDLDDLKKL-------SAGCMGKLLIYKSGAIKLRLGDILY
        +++ ++     Q P +LP         P   S+   +E+ G             +   + ++DDL  L        AG +G L +++SG   L +G + +
Subjt:  DENTENTKYFFQLPARLPL--------PKQSSTATGKEKVGNSR--------SSNSTSSSDLDDLKKL-------SAGCMGKLLIYKSGAIKLRLGDILY

Query:  DVSSGSDCSFLQHVVAINTEKGQCCDLGDIGKRVVVTPD
         V SGSDC FLQ +  ++ +  +  +LG   +R++V+PD
Subjt:  DVSSGSDCSFLQHVVAINTEKGQCCDLGDIGKRVVVTPD

P05423 DNA-directed RNA polymerase III subunit RPC4

4.7e-07

32.58

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Query:  ENTKYFFQLPARLP--LPKQSSTATGKEKVG---------NSRSSNSTSSSDLDDLKKLSAGCMGKLLIYKSGAIKLRLGDILYDVSSGSDCSFLQHVVA
        E    F QLP  LP   P Q       E  G           +   +  + +   L  L+ G +GKLLI KSG ++L LG +  DV+ G+ CSFLQ +V+
Subjt:  ENTKYFFQLPARLP--LPKQSSTATGKEKVG---------NSRSSNSTSSSDLDDLKKLSAGCMGKLLIYKSGAIKLRLGDILYDVSSGSDCSFLQHVVA

Query:  I---NTEKGQCCDLGDIGKRVVVTPDISSLLN
        +   ++  G+   LG +  ++V +PD  SLL+
Subjt:  I---NTEKGQCCDLGDIGKRVVVTPDISSLLN

P25441 DNA-directed RNA polymerase III subunit RPC4

5.2e-06

30.17

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Query:  FQLPARLPLPKQSSTATGKEKVGNSRSSNSTSSSDL---DDLKKLS----AGCMGKLLIYKSGAIKLRLGDILYDVSSGSDCSFLQHVVAIN--TEKGQC
        FQLP RLP  ++ +    KE +    S  S    ++   D    LS    AG +G + ++KSG + +++G+++ D+  G++ +FLQ V+A++   +    
Subjt:  FQLPARLPLPKQSSTATGKEKVGNSRSSNSTSSSDL---DDLKKLS----AGCMGKLLIYKSGAIKLRLGDILYDVSSGSDCSFLQHVVAIN--TEKGQC

Query:  CDLGDIGKRVVVTPDI
          LG +  ++VVTP I
Subjt:  CDLGDIGKRVVVTPDI

Q5E9Z7 DNA-directed RNA polymerase III subunit RPC4

8.1e-07

37.11

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Query:  KEKVGNSRSSNSTSSSDLDDLKKLSAGCMGKLLIYKSGAIKLRLGDILYDVSSGSDCSFLQHVVAI---NTEKGQCCDLGDIGKRVVVTPDISSLLN
        +EK   +R + +T +     L  L+ G +GKLLI KSG ++L LG +  DV+ G+ CSFLQ +V++   ++  G    LG I  ++V +P+  SLL+
Subjt:  KEKVGNSRSSNSTSSSDLDDLKKLSAGCMGKLLIYKSGAIKLRLGDILYDVSSGSDCSFLQHVVAI---NTEKGQCCDLGDIGKRVVVTPDISSLLN

Q91WD1 DNA-directed RNA polymerase III subunit RPC4

3.6e-07

33.07

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Query:  FFQLPARLP--LPKQSSTATGKEKVG---------NSRSSNSTSSSDLDDLKKLSAGCMGKLLIYKSGAIKLRLGDILYDVSSGSDCSFLQHVVAI---N
        F QLP  LP   P Q       E  G           +   +  + +   L  L+ G +GKLLI KSG ++L LG +  DV+ G+ CSFLQ +V++   +
Subjt:  FFQLPARLP--LPKQSSTATGKEKVG---------NSRSSNSTSSSDLDDLKKLSAGCMGKLLIYKSGAIKLRLGDILYDVSSGSDCSFLQHVVAI---N

Query:  TEKGQCCDLGDIGKRVVVTPDISSLLN
        +  G+   LG +  ++V +PD  SLL+
Subjt:  TEKGQCCDLGDIGKRVVVTPDISSLLN

Arabidopsis top hits

e value

%identity

Alignment

AT4G25180.1 RNA polymerase III RPC4

2.4e-46

38.92

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Query:  DSSPPRRKVKFAPKSSQ-RRRPPPPPVQKTEDEDGEGYVAQTRYLLRRANENLGKRANKVEKKSSVQVAFGPGAESTSSSIRTYGVPKVENGSRKNDIEP
        DS   + K +F P   +  RR P  P   TE E+ E  +  +R   RR    +G+R     K SS +VAF P    +  +IR++GVPK E+    +D+ P
Subjt:  DSSPPRRKVKFAPKSSQ-RRRPPPPPVQKTEDEDGEGYVAQTRYLLRRANENLGKRANKVEKKSSVQVAFGPGAESTSSSIRTYGVPKVENGSRKNDIEP

Query:  EVDEDEEFVLPVAMDV---NEDGKFFDKKTKDGIAESSSSAMVTKTKRDYKEPWDYQNSYYPTTLPLRMPYSGDHERLDEAEFGQDAMNREYDENSVIPA
                +LP    V    EDG+                  VT+T  DY EPWDY+NSYYPT LPLR P SGD E LD+ EFG+ A NR+YDEN++  A
Subjt:  EVDEDEEFVLPVAMDV---NEDGKFFDKKTKDGIAESSSSAMVTKTKRDYKEPWDYQNSYYPTTLPLRMPYSGDHERLDEAEFGQDAMNREYDENSVIPA

Query:  LDLGLQD-ENTENTKYFFQLPARLPLPKQSSTATGKEKVGNSRSSNSTSSSDLDDLKKLSAGCMGKLLIYKSGAIKLRLGDILYDVSSGSDCSFLQHVVA
         +LGL   ++++   + F++P  LP+ KQ++ AT K      RS    SS   +  + L  G MGK+L+YKSGA+KL++GD L+DVS G        VVA
Subjt:  LDLGLQD-ENTENTKYFFQLPARLPLPKQSSTATGKEKVGNSRSSNSTSSSDLDDLKKLSAGCMGKLLIYKSGAIKLRLGDILYDVSSGSDCSFLQHVVA

Query:  INTEKGQCCDLGDIGKRVVVTPDISSLLNSVTNL
        I+ +   C  +G   K V VTPD+ SLLN  +++
Subjt:  INTEKGQCCDLGDIGKRVVVTPDISSLLNSVTNL

AT5G09380.1 RNA polymerase III RPC4

1.8e-38

35.56

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Query:  DSSPPRRKVKFAPKSSQRRRPPPPPVQKTEDEDGEGYVAQTRYLLRRANENLGKRANKVEKKSSVQVAFGPGAESTSSSIRTYGVPKVENGSRKNDIEPE
        +  PP RK+KFAPK+  +R   P P  K E  +     AQ   LLRR NE   ++    +K  + QVA+  G               V N +R N     
Subjt:  DSSPPRRKVKFAPKSSQRRRPPPPPVQKTEDEDGEGYVAQTRYLLRRANENLGKRANKVEKKSSVQVAFGPGAESTSSSIRTYGVPKVENGSRKNDIEPE

Query:  VDEDEEFVLPVAMDVNEDGKFFDKKTKDGIAESSSSAMVTKTKRDYKEPWDYQNSYYPTTLPLRMPYSGDHERLDEAEFGQDAMNREYDENSVIPALDLG
                           K+ ++   +G   S+S+  +     +YKEPWDY  SYYP TLP+R PY+GD E LD  EF Q      + E+S+  A +LG
Subjt:  VDEDEEFVLPVAMDVNEDGKFFDKKTKDGIAESSSSAMVTKTKRDYKEPWDYQNSYYPTTLPLRMPYSGDHERLDEAEFGQDAMNREYDENSVIPALDLG

Query:  LQDENTENTKYFFQLPARLPLPKQSSTATGKEKVGNSRSSNSTSSSDLDDLKKLSAGCMGKLLIYKSGAIKLRLGDILYDVSSGSDCSFLQHVVAINTEK
        L +++ E   +F +LP+ +PL      +T  E +    +          DLK L  G MGKLL+YKSGA+K++LG++LYDVS G    F Q V+ +NTE+
Subjt:  LQDENTENTKYFFQLPARLPLPKQSSTATGKEKVGNSRSSNSTSSSDLDDLKKLSAGCMGKLLIYKSGAIKLRLGDILYDVSSGSDCSFLQHVVAINTEK

Query:  GQCCDLGDIGKRVVVTPDISSLLNSVTNL
          CC +GD+ K  V+TPDI S+L  + N+
Subjt:  GQCCDLGDIGKRVVVTPDISSLLNSVTNL

Sequences

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CDS sequence

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ATGAAGAATCAGGATTCATCTCCTCCACGCAGAAAGGTTAAATTCGCTCCAAAATCCTCACAGCGCAGGAGGCCGCCACCACCACCAGTTCAGAAAACTGAAGATGAAGA
TGGTGAGGGTTATGTTGCTCAAACTCGCTACCTGTTACGCCGTGCCAATGAGAATCTCGGAAAACGAGCGAACAAGGTCGAAAAAAAATCTTCAGTGCAAGTTGCATTCG
GTCCTGGTGCTGAATCAACGTCATCTTCTATTAGAACATATGGAGTTCCCAAAGTAGAAAACGGTAGCAGAAAAAATGACATTGAGCCTGAAGTTGATGAAGATGAGGAG
TTTGTCTTGCCAGTGGCTATGGATGTTAACGAAGATGGAAAATTTTTTGATAAAAAAACTAAAGATGGAATAGCTGAATCCTCTAGTTCGGCTATGGTAACCAAGACCAA
GAGGGATTACAAAGAACCTTGGGATTACCAAAATTCTTACTATCCTACTACACTCCCTTTACGGATGCCTTACTCTGGAGACCATGAACGACTTGATGAAGCTGAGTTCG
GGCAGGATGCGATGAATAGAGAGTATGACGAGAACTCTGTAATACCTGCCTTGGATCTCGGGTTGCAGGATGAAAACACAGAGAATACTAAGTACTTCTTTCAGCTTCCT
GCACGTCTTCCTTTACCCAAACAATCGTCTACTGCAACGGGAAAGGAGAAAGTAGGAAATTCGAGATCTTCAAACAGCACGAGCTCATCCGATCTCGACGATTTGAAGAA
ACTTTCTGCTGGATGTATGGGGAAACTGCTGATATACAAGAGTGGAGCTATTAAGTTGAGGCTGGGAGATATTCTTTACGATGTTTCTTCTGGATCAGACTGCAGTTTTC
TTCAACATGTTGTGGCAATCAACACTGAAAAGGGACAGTGCTGCGATCTCGGAGACATCGGCAAACGTGTTGTTGTAACACCAGATATTAGTTCCCTTTTAAATTCAGTG
ACTAATTTGAGATGA

mRNA sequence

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CTCGGCAATATGTCATTCCAACTGGTCTAGTGTTCGATTCTCCCCTTTTCTTCTTTTCCACCATTTTTGTCCCATTTCCGTTCATCGTCGTCTTCAACCTCGAGCTCATG
AAGAATCAGGATTCATCTCCTCCACGCAGAAAGGTTAAATTCGCTCCAAAATCCTCACAGCGCAGGAGGCCGCCACCACCACCAGTTCAGAAAACTGAAGATGAAGATGG
TGAGGGTTATGTTGCTCAAACTCGCTACCTGTTACGCCGTGCCAATGAGAATCTCGGAAAACGAGCGAACAAGGTCGAAAAAAAATCTTCAGTGCAAGTTGCATTCGGTC
CTGGTGCTGAATCAACGTCATCTTCTATTAGAACATATGGAGTTCCCAAAGTAGAAAACGGTAGCAGAAAAAATGACATTGAGCCTGAAGTTGATGAAGATGAGGAGTTT
GTCTTGCCAGTGGCTATGGATGTTAACGAAGATGGAAAATTTTTTGATAAAAAAACTAAAGATGGAATAGCTGAATCCTCTAGTTCGGCTATGGTAACCAAGACCAAGAG
GGATTACAAAGAACCTTGGGATTACCAAAATTCTTACTATCCTACTACACTCCCTTTACGGATGCCTTACTCTGGAGACCATGAACGACTTGATGAAGCTGAGTTCGGGC
AGGATGCGATGAATAGAGAGTATGACGAGAACTCTGTAATACCTGCCTTGGATCTCGGGTTGCAGGATGAAAACACAGAGAATACTAAGTACTTCTTTCAGCTTCCTGCA
CGTCTTCCTTTACCCAAACAATCGTCTACTGCAACGGGAAAGGAGAAAGTAGGAAATTCGAGATCTTCAAACAGCACGAGCTCATCCGATCTCGACGATTTGAAGAAACT
TTCTGCTGGATGTATGGGGAAACTGCTGATATACAAGAGTGGAGCTATTAAGTTGAGGCTGGGAGATATTCTTTACGATGTTTCTTCTGGATCAGACTGCAGTTTTCTTC
AACATGTTGTGGCAATCAACACTGAAAAGGGACAGTGCTGCGATCTCGGAGACATCGGCAAACGTGTTGTTGTAACACCAGATATTAGTTCCCTTTTAAATTCAGTGACT
AATTTGAGATGATTGTGAAGAAAAAGCCTGTGGATAGAACAACCAACAAAAGAAACAACAAAGAAGGGCAAATCCTTAAACGTTTGGGTGTGTAGTGAGGGTGCTCATTT
AGTAAGGAAGTTGGGATGTCAAGTTCTTGTCTAAACTTTCTCCTTTGTTAATTCTATGGAAACAACGACATATTCAGTATCTCTGATTTCTAGCTGTGGAATAGGTTTAC
CCGAGAATGTTGATAGTTGTAAAATACTTTTTGTGGAAGTTGTAAATATTGAGACCAAAATAGTATGAAATTTATGAACTTGATATGTAACGATCTTTGTAGGGGGCG

Protein sequence

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MKNQDSSPPRRKVKFAPKSSQRRRPPPPPVQKTEDEDGEGYVAQTRYLLRRANENLGKRANKVEKKSSVQVAFGPGAESTSSSIRTYGVPKVENGSRKNDIEPEVDEDEE
FVLPVAMDVNEDGKFFDKKTKDGIAESSSSAMVTKTKRDYKEPWDYQNSYYPTTLPLRMPYSGDHERLDEAEFGQDAMNREYDENSVIPALDLGLQDENTENTKYFFQLP
ARLPLPKQSSTATGKEKVGNSRSSNSTSSSDLDDLKKLSAGCMGKLLIYKSGAIKLRLGDILYDVSSGSDCSFLQHVVAINTEKGQCCDLGDIGKRVVVTPDISSLLNSV
TNLR

IVF0021211 (gene) of Melon (IVF77) v1 genome