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IVF0021216 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0021216
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionGag/pol protein
Genome locationchr08:12026746..12026988
RNA-Seq ExpressionIVF0021216
SyntenyIVF0021216
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR001878 - Zinc finger, CCHC-type
IPR036875 - Zinc finger, CCHC-type superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0025761.1 gag/pol protein [Cucumis melo var. makuwa]1.59e-50100Show/hide
Query:  MGKGKEMEANVATTEKKLVGGSSSKTRVGTLNMKKKRKRKTPKNSEGKKVAKGKCYHCHEDGHWLRNCPKYLAEKKAQGN
        MGKGKEMEANVATTEKKLVGGSSSKTRVGTLNMKKKRKRKTPKNSEGKKVAKGKCYHCHEDGHWLRNCPKYLAEKKAQGN
Subjt:  MGKGKEMEANVATTEKKLVGGSSSKTRVGTLNMKKKRKRKTPKNSEGKKVAKGKCYHCHEDGHWLRNCPKYLAEKKAQGN

KAA0038365.1 gag/pol protein [Cucumis melo var. makuwa]7.22e-4187.18Show/hide
Query:  MGKGKEMEANVATTEKKLVGGSSSKTRVGTLNMKKKRKRKTPKNSEGKKVAKGKCYHCHEDGHWLRNCPKYLAEKKAQ
        MGKGKE+EAN ATTEK+LVGGSSSKT+VGTLNMKKKR RKTP NSEGKKVAKGKCYHC+E+GHWLRNC KYLAEKKA+
Subjt:  MGKGKEMEANVATTEKKLVGGSSSKTRVGTLNMKKKRKRKTPKNSEGKKVAKGKCYHCHEDGHWLRNCPKYLAEKKAQ

KAA0051354.1 gag/pol protein [Cucumis melo var. makuwa]1.52e-4088.46Show/hide
Query:  MGKGKEMEANVATTEKKLVGGSSSKTRVGTLNMKKKRKRKTPKNSEGKKVAKGKCYHCHEDGHWLRNCPKYLAEKKAQ
        MGKGKE+EAN ATTEK+LVGGSSSKTRVGTLNMKKKRK  TPKNSEGKKVAKGKC HC+ED HWLRNCPKYLAEKKA+
Subjt:  MGKGKEMEANVATTEKKLVGGSSSKTRVGTLNMKKKRKRKTPKNSEGKKVAKGKCYHCHEDGHWLRNCPKYLAEKKAQ

TYK04285.1 gag/pol protein [Cucumis melo var. makuwa]7.89e-4290.91Show/hide
Query:  MGKGKEMEANVATTEKKLVGGSSSKTRVGTLNMKKKRKRKTPKNSEGKKVAKGKCYHCHEDGHWLRNCPKYLAEKKA
        MGKGKE+E NV TTEK+LVGGSSSKTRVGTLNMKKKRK KTPKNSEGKKVAKGKCYHC+EDGHWLRNCPKYL EKKA
Subjt:  MGKGKEMEANVATTEKKLVGGSSSKTRVGTLNMKKKRKRKTPKNSEGKKVAKGKCYHCHEDGHWLRNCPKYLAEKKA

TYK16526.1 gag/pol protein [Cucumis melo var. makuwa]1.41e-4084.52Show/hide
Query:  MGKGKEMEANVATTEKKLVGGSSSKTRVGTLNMKKKRKRKTPKNSEGKKVAKGKCYHCHEDGHWLRNCPKYLA----EKKAQGN
        MGKGKE+EANVATTEK+LVGGSS KTR GTLNMKKKRK KTPKNSEGKKVAKGKCYHC+EDG+WLRNC KYLA    EK+AQGN
Subjt:  MGKGKEMEANVATTEKKLVGGSSSKTRVGTLNMKKKRKRKTPKNSEGKKVAKGKCYHCHEDGHWLRNCPKYLA----EKKAQGN

TrEMBL top hitse value%identityAlignment
A0A5A7SND1 Gag/pol protein5.4e-37100Show/hide
Query:  MGKGKEMEANVATTEKKLVGGSSSKTRVGTLNMKKKRKRKTPKNSEGKKVAKGKCYHCHEDGHWLRNCPKYLAEKKAQGN
        MGKGKEMEANVATTEKKLVGGSSSKTRVGTLNMKKKRKRKTPKNSEGKKVAKGKCYHCHEDGHWLRNCPKYLAEKKAQGN
Subjt:  MGKGKEMEANVATTEKKLVGGSSSKTRVGTLNMKKKRKRKTPKNSEGKKVAKGKCYHCHEDGHWLRNCPKYLAEKKAQGN

A0A5A7TAG4 Gag/pol protein8.4e-3087.18Show/hide
Query:  MGKGKEMEANVATTEKKLVGGSSSKTRVGTLNMKKKRKRKTPKNSEGKKVAKGKCYHCHEDGHWLRNCPKYLAEKKAQ
        MGKGKE+EAN ATTEK+LVGGSSSKT+VGTLNMKKKR RKTP NSEGKKVAKGKCYHC+E+GHWLRNC KYLAEKKA+
Subjt:  MGKGKEMEANVATTEKKLVGGSSSKTRVGTLNMKKKRKRKTPKNSEGKKVAKGKCYHCHEDGHWLRNCPKYLAEKKAQ

A0A5A7U7R6 Gag/pol protein1.9e-2988.46Show/hide
Query:  MGKGKEMEANVATTEKKLVGGSSSKTRVGTLNMKKKRKRKTPKNSEGKKVAKGKCYHCHEDGHWLRNCPKYLAEKKAQ
        MGKGKE+EAN ATTEK+LVGGSSSKTRVGTLNMKKKRK  TPKNSEGKKVAKGKC HC+ED HWLRNCPKYLAEKKA+
Subjt:  MGKGKEMEANVATTEKKLVGGSSSKTRVGTLNMKKKRKRKTPKNSEGKKVAKGKCYHCHEDGHWLRNCPKYLAEKKAQ

A0A5D3BYQ2 Gag/pol protein3.4e-3190.91Show/hide
Query:  MGKGKEMEANVATTEKKLVGGSSSKTRVGTLNMKKKRKRKTPKNSEGKKVAKGKCYHCHEDGHWLRNCPKYLAEKKA
        MGKGKE+E NV TTEK+LVGGSSSKTRVGTLNMKKKRK KTPKNSEGKKVAKGKCYHC+EDGHWLRNCPKYL EKKA
Subjt:  MGKGKEMEANVATTEKKLVGGSSSKTRVGTLNMKKKRKRKTPKNSEGKKVAKGKCYHCHEDGHWLRNCPKYLAEKKA

A0A5D3CUK8 Gag/pol protein1.7e-3089.61Show/hide
Query:  GKGKEMEANVATTEKKLVGGSSSKTRVGTLNMKKKRKRKTPKNSEGKKVAKGKCYHCHEDGHWLRNCPKYLAEKKAQ
        GKGKE+E NVATTEK+LVGGSSSKTRVGTLNMKKKRK KTPKNS+GKKVAK KCYHC+EDGHWLRNCPKYLAEKKA+
Subjt:  GKGKEMEANVATTEKKLVGGSSSKTRVGTLNMKKKRKRKTPKNSEGKKVAKGKCYHCHEDGHWLRNCPKYLAEKKAQ

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGTAAAGGGAAGGAAATGGAAGCAAATGTTGCTACCACAGAGAAAAAGTTAGTGGGAGGATCGTCCTCTAAGACTAGAGTTGGAACTTTAAATATGAAGAAAAAGAG
AAAGAGGAAGACTCCTAAGAATAGTGAGGGAAAGAAAGTTGCTAAAGGTAAATGTTACCATTGCCATGAAGACGGACATTGGTTGAGAAATTGCCCGAAGTACCTTGCTG
AGAAGAAAGCACAAGGAAACTAG
mRNA sequenceShow/hide mRNA sequence
ATGGGTAAAGGGAAGGAAATGGAAGCAAATGTTGCTACCACAGAGAAAAAGTTAGTGGGAGGATCGTCCTCTAAGACTAGAGTTGGAACTTTAAATATGAAGAAAAAGAG
AAAGAGGAAGACTCCTAAGAATAGTGAGGGAAAGAAAGTTGCTAAAGGTAAATGTTACCATTGCCATGAAGACGGACATTGGTTGAGAAATTGCCCGAAGTACCTTGCTG
AGAAGAAAGCACAAGGAAACTAG
Protein sequenceShow/hide protein sequence
MGKGKEMEANVATTEKKLVGGSSSKTRVGTLNMKKKRKRKTPKNSEGKKVAKGKCYHCHEDGHWLRNCPKYLAEKKAQGN