; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

IVF0021233 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0021233
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionRetrotrans_gag domain-containing protein
Genome locationchr11:23223382..23223684
RNA-Seq ExpressionIVF0021233
SyntenyIVF0021233
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0036004.1 uncharacterized protein E6C27_scaffold56G002210 [Cucumis melo var. makuwa]2.00e-2167.11Show/hide
Query:  MLKFFRYLSDDFRATIEKIEAEMAKMKMQLNLTIVSSKLNIPEPKALNGNCDVKELENFIFDMKQCFKANGTNSEE
        MLK    L DDFRATIE I AEMA MKM          L I EPKA NGNC  KELENFIFDM+Q FKANGTNSEE
Subjt:  MLKFFRYLSDDFRATIEKIEAEMAKMKMQLNLTIVSSKLNIPEPKALNGNCDVKELENFIFDMKQCFKANGTNSEE

KAA0048463.1 uncharacterized protein E6C27_scaffold61G00640 [Cucumis melo var. makuwa]1.89e-2257.14Show/hide
Query:  DDFRATIEKIEAEMAKMKMQLNLTI-------------VSSKLNIPEPKALNGNCDVKELENFIFDMKQCFKANGTNSEENQGRI-SLHAS
        D+FRATIE I+AEMA+MK+ +NL +             VSSK  IP+PKA NGN DVKELENFIFDM+Q FKA+GTNS+E +  + S+H S
Subjt:  DDFRATIEKIEAEMAKMKMQLNLTI-------------VSSKLNIPEPKALNGNCDVKELENFIFDMKQCFKANGTNSEENQGRI-SLHAS

KAA0067610.1 uncharacterized protein E6C27_scaffold485G00780 [Cucumis melo var. makuwa]9.86e-3166Show/hide
Query:  MLKFFRYLSDDFRATIEKIEAEMAKMKMQLNLTI-------------VSSKLNIPEPKALNGNCDVKELENFIFDMKQCFKANGTNSEENQGRI-SLHAS
        MLKFF  LSDDF ATIEKIEAEMAKMKMQ+NLT+             VSSKL IPEPKA NGN DVKELE FIFDM+Q FKA+GT+SEE +  + S+H S
Subjt:  MLKFFRYLSDDFRATIEKIEAEMAKMKMQLNLTI-------------VSSKLNIPEPKALNGNCDVKELENFIFDMKQCFKANGTNSEENQGRI-SLHAS

TYK03491.1 uncharacterized protein E5676_scaffold121G001100 [Cucumis melo var. makuwa]1.11e-2052.08Show/hide
Query:  MLKFFRYLSDDFRATIEKIEAEMAKMKMQLNLTI-------------VSSKLNIPEPKALNGNCDVKELENFIFDMKQCFKANGTNSEENQGRISL
        MLK F  LSDDFRATIE I+ +M ++K+Q+ LT+             VSS+L IPEPKA + N D KELENFI D+KQ FKA+G NSEE +  ++ 
Subjt:  MLKFFRYLSDDFRATIEKIEAEMAKMKMQLNLTI-------------VSSKLNIPEPKALNGNCDVKELENFIFDMKQCFKANGTNSEENQGRISL

WP_217833205.1 retrotransposon gag domain-containing protein, partial [Synechococcus sp. PCC 7002]4.68e-2152Show/hide
Query:  MLKFFRYLSDDFRATIEKIEAEMAKMKMQLNLTI-------------VSSKLNIPEPKALNGNCDVKELENFIFDMKQCFKANGTNSEENQGRI-SLHAS
        MLK F  L+DDFRAT+E I AEM +MK Q+NLT+             + ++  IPEPKA +GN D K+LENFIFDM Q FKA+GT SEE +  + S+H S
Subjt:  MLKFFRYLSDDFRATIEKIEAEMAKMKMQLNLTI-------------VSSKLNIPEPKALNGNCDVKELENFIFDMKQCFKANGTNSEENQGRI-SLHAS

TrEMBL top hitse value%identityAlignment
A0A5A7VKA0 Uncharacterized protein4.1e-2266Show/hide
Query:  MLKFFRYLSDDFRATIEKIEAEMAKMKMQLNLTI-------------VSSKLNIPEPKALNGNCDVKELENFIFDMKQCFKANGTNSEENQGRI-SLHAS
        MLKFF  LSDDF ATIEKIEAEMAKMKMQ+NLT+             VSSKL IPEPKA NGN DVKELE FIFDM+Q FKA+GT+SEE +  + S+H S
Subjt:  MLKFFRYLSDDFRATIEKIEAEMAKMKMQLNLTI-------------VSSKLNIPEPKALNGNCDVKELENFIFDMKQCFKANGTNSEENQGRI-SLHAS

A0A5D3BUS6 Uncharacterized protein1.1e-1454.95Show/hide
Query:  MLKFFRYLSDDFRATIEKIEAEMAKMKMQLNLTI-------------VSSKLNIPEPKALNGNCDVKELENFIFDMKQCFKANGTNSEENQ
        MLK F  LSDDFRATIE I+ +M ++K+Q+ LT+             VSS+L IPEPKA + N D KELENFI D+KQ FKA+G NSEE +
Subjt:  MLKFFRYLSDDFRATIEKIEAEMAKMKMQLNLTI-------------VSSKLNIPEPKALNGNCDVKELENFIFDMKQCFKANGTNSEENQ

A0A5D3DYE0 Uncharacterized protein9.8e-1657.14Show/hide
Query:  DDFRATIEKIEAEMAKMKMQLNLTI-------------VSSKLNIPEPKALNGNCDVKELENFIFDMKQCFKANGTNSEENQGRI-SLHAS
        D+FRATIE I+AEMA+MK+ +NL +             VSSK  IP+PKA NGN DVKELENFIFDM+Q FKA+GTNS+E +  + S+H S
Subjt:  DDFRATIEKIEAEMAKMKMQLNLTI-------------VSSKLNIPEPKALNGNCDVKELENFIFDMKQCFKANGTNSEENQGRI-SLHAS

A0A5D3E2R0 Uncharacterized protein4.9e-1565.38Show/hide
Query:  MLKFFRYLSDDFRATIEKIEAEMAKMKMQLNLTIVSSKLNIPEPKALNGNCDVKELENFIFDMKQCFKANGTNSEENQ
        MLK    L DDFRATIE I AEMA MKM          L I EPKA NGNC  KELENFIFDM+Q FKANGTNSEE +
Subjt:  MLKFFRYLSDDFRATIEKIEAEMAKMKMQLNLTIVSSKLNIPEPKALNGNCDVKELENFIFDMKQCFKANGTNSEENQ

A0A5D3E481 Reverse transcriptase1.2e-1353.19Show/hide
Query:  MLKFFRYLSDDFRATIEKIEAEMAKMKMQLNLTI-------------VSSKLNIPEPKALNGNCDVKELENFIFDMKQCFKANGTNSEENQGRI
        M K F  LS DFRATIE I+ EM +MKMQ+NLT+             VSS+L I E KA N N D KELEN IFDM+Q FKA+G+NSE+ + ++
Subjt:  MLKFFRYLSDDFRATIEKIEAEMAKMKMQLNLTI-------------VSSKLNIPEPKALNGNCDVKELENFIFDMKQCFKANGTNSEENQGRI

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCTAAAGTTTTTTAGATATCTATCAGATGACTTTAGAGCAACGATCGAGAAAATCGAGGCTGAGATGGCAAAGATGAAAATGCAACTAAATTTAACGATTGTTTCGAG
TAAGCTCAATATCCCAGAACCCAAAGCCTTGAATGGAAACTGCGATGTTAAAGAGCTTGAAAATTTTATCTTCGATATGAAGCAATGCTTTAAGGCAAATGGAACCAATT
CTGAAGAAAACCAAGGTCGCATTAGCCTCCATGCATCTGTCTGA
mRNA sequenceShow/hide mRNA sequence
ATGCTAAAGTTTTTTAGATATCTATCAGATGACTTTAGAGCAACGATCGAGAAAATCGAGGCTGAGATGGCAAAGATGAAAATGCAACTAAATTTAACGATTGTTTCGAG
TAAGCTCAATATCCCAGAACCCAAAGCCTTGAATGGAAACTGCGATGTTAAAGAGCTTGAAAATTTTATCTTCGATATGAAGCAATGCTTTAAGGCAAATGGAACCAATT
CTGAAGAAAACCAAGGTCGCATTAGCCTCCATGCATCTGTCTGA
Protein sequenceShow/hide protein sequence
MLKFFRYLSDDFRATIEKIEAEMAKMKMQLNLTIVSSKLNIPEPKALNGNCDVKELENFIFDMKQCFKANGTNSEENQGRISLHASV