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IVF0021349 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0021349
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionGag/pol protein
Genome locationchr08:24524868..24525889
RNA-Seq ExpressionIVF0021349
SyntenyIVF0021349
Gene Ontology termsGO:0006807 - nitrogen compound metabolic process (biological process)
GO:0043170 - macromolecule metabolic process (biological process)
GO:0044238 - primary metabolic process (biological process)
GO:0016020 - membrane (cellular component)
GO:0016787 - hydrolase activity (molecular function)
GO:0046872 - metal ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0062888.1 non-LTR retroelement reverse transcriptase-like protein [Cucumis melo var. makuwa]9.35e-6449.02Show/hide
Query:  TPTPGMLPDMFSQGIGRKASLLEGELSEGNGLSSRTSDALPKKTRARMHRNNFSCPRVKTGPKTVSSLCFVFAISFSIFGAHTPRTSTHTPGMLPDTF--
        T TPGM+ D F  GIG +AS LEGEL E NGLSS+ S A P KTRARM R  FS P  K+GP TVSSLC V  IS SIFGA T RTSTHT GMLPDTF  
Subjt:  TPTPGMLPDMFSQGIGRKASLLEGELSEGNGLSSRTSDALPKKTRARMHRNNFSCPRVKTGPKTVSSLCFVFAISFSIFGAHTPRTSTHTPGMLPDTF--

Query:  -----------------------------------------------YSGIGWEPSSLEEEL---RKRE------------------------------S
                                                       +S +  E SSLEEEL    KR                               +
Subjt:  -----------------------------------------------YSGIGWEPSSLEEEL---RKRE------------------------------S

Query:  SRISGARAKKTRARTPQTHFSRPGVKTDPSTVSSLYFVLAITPSIFGARTSRTSTHTPGMLPNSFFQGIGQEASSLEGELMCDQKGTKRWPMLLTSGERS
        SR SGA  KKTRAR P++ FSR G K+D  TVSSL FVL I  SIF ART RTSTHT GMLP+ F +GIGQEASSLEGEL C+ K +KRW ML TS ERS
Subjt:  SRISGARAKKTRARTPQTHFSRPGVKTDPSTVSSLYFVLAITPSIFGARTSRTSTHTPGMLPNSFFQGIGQEASSLEGELMCDQKGTKRWPMLLTSGERS

Query:  FDVRNH
          +RNH
Subjt:  FDVRNH

KAA0065516.1 uncharacterized protein E6C27_scaffold638G00090 [Cucumis melo var. makuwa]3.99e-3142.23Show/hide
Query:  LTPTPGMLPDMFSQGIGRKASLLEGELSEGNGLSSRTSDALPKKTRARMHRNNFSCPRVKTGPKTVSSLCFVFAISFSIFGAHTP-------RTSTHTPG
        +T  PG++P  F QGIG+KASLLEG+LS+GNGLSSRTS  LP+K R RM R     P V+            +  + S+   H P       R+     G
Subjt:  LTPTPGMLPDMFSQGIGRKASLLEGELSEGNGLSSRTSDALPKKTRARMHRNNFSCPRVKTGPKTVSSLCFVFAISFSIFGAHTP-------RTSTHTPG

Query:  MLPDTFYSGIGWEPSSLEEELRKRESSRISGARAKKTRARTPQTHFSRPGVKTDPSTVSSLYFVLAITPSIFGARTSRTSTHTPGMLPNSFFQGIGQEAS
             F  G G              SSR SG R++K RAR P+T F    VK+ P+TVS    V  I+ S FG    RTS + PG++P+ F QGIG E S
Subjt:  MLPDTFYSGIGWEPSSLEEELRKRESSRISGARAKKTRARTPQTHFSRPGVKTDPSTVSSLYFVLAITPSIFGARTSRTSTHTPGMLPNSFFQGIGQEAS

Query:  SLEGEL
        SLEGEL
Subjt:  SLEGEL

TYJ98800.1 uncharacterized protein E5676_scaffold1625G00140 [Cucumis melo var. makuwa]1.20e-3042.23Show/hide
Query:  LTPTPGMLPDMFSQGIGRKASLLEGELSEGNGLSSRTSDALPKKTRARMHRNNFSCPRVKTGPKTVSSLCFVFAISFSIFGAHTP-------RTSTHTPG
        +T  PG++P  F QGIGRKASLLEG+LS+GNGLSSRTS  LP+K R RM R     P V+            +  + S+   H P       R+     G
Subjt:  LTPTPGMLPDMFSQGIGRKASLLEGELSEGNGLSSRTSDALPKKTRARMHRNNFSCPRVKTGPKTVSSLCFVFAISFSIFGAHTP-------RTSTHTPG

Query:  MLPDTFYSGIGWEPSSLEEELRKRESSRISGARAKKTRARTPQTHFSRPGVKTDPSTVSSLYFVLAITPSIFGARTSRTSTHTPGMLPNSFFQGIGQEAS
             F  G G              SSR SG R++K RAR P+T F    VK+ P+TVS    V  I+ S F     RTS + PG++P+ F QGIG E S
Subjt:  MLPDTFYSGIGWEPSSLEEELRKRESSRISGARAKKTRARTPQTHFSRPGVKTDPSTVSSLYFVLAITPSIFGARTSRTSTHTPGMLPNSFFQGIGQEAS

Query:  SLEGEL
        SLEGEL
Subjt:  SLEGEL

TYK22521.1 uncharacterized protein E5676_scaffold387G00220 [Cucumis melo var. makuwa]1.78e-4251.78Show/hide
Query:  EGNGLSSRTSDALPKKTRARMHRNNFSCPRVKTGPKTVSSLCFVFAISFSIFGAHTPRTSTHTPGMLPDTFYSGIGWEPSSLEEELRKRESSRISGARAK
        EGNGLSSRTS A PKKTRARM +  FS P  K+ P TVS+LC V   S SIFGA TPRTSTHTPGMLPDTF                 RE  R+S     
Subjt:  EGNGLSSRTSDALPKKTRARMHRNNFSCPRVKTGPKTVSSLCFVFAISFSIFGAHTPRTSTHTPGMLPDTFYSGIGWEPSSLEEELRKRESSRISGARAK

Query:  KTRARTPQTHFSRPGVKTDPSTVSSLYFVLAITPSIFGARTSRTSTHTPGMLPNSFFQGIGQEASSLEGELMCDQKGTKRWPMLLTSGERSFDVRNH
                  F   G    P     L  +   +  + G+ T RTSTHT GMLP++F  GIG+EASSLEGEL+CD K +KRWPML T GERS   RNH
Subjt:  KTRARTPQTHFSRPGVKTDPSTVSSLYFVLAITPSIFGARTSRTSTHTPGMLPNSFFQGIGQEASSLEGELMCDQKGTKRWPMLLTSGERSFDVRNH

TYK23424.1 gag/pol protein [Cucumis melo var. makuwa]3.07e-5048.61Show/hide
Query:  TPTPGMLPDMFSQGIGRKASLLEGELSEGNGLSSRTSDALPKKTRARMHRNNFSCPRVKTGPKTVSSLCFVFAISFSIFGAHTPRTSTHTPGMLPDTFYS
        T TPGMLP+ FSQGIGR+ASLLEGELS+ N LSSR S   PKK       ++      KT  +TVSSL F+  IS  IFGAHTPRTSTHT  MLPD F  
Subjt:  TPTPGMLPDMFSQGIGRKASLLEGELSEGNGLSSRTSDALPKKTRARMHRNNFSCPRVKTGPKTVSSLCFVFAISFSIFGAHTPRTSTHTPGMLPDTFYS

Query:  GIGWEPSSLEEELR---------------------------------KRESSRISGARAKKTRARTPQTHFSRPGVKTDPSTVSSLYFVLAITPSIFGAR
        GIG E SSLE ELR                                  R  SR S    KKT AR PQT F RP                          
Subjt:  GIGWEPSSLEEELR---------------------------------KRESSRISGARAKKTRARTPQTHFSRPGVKTDPSTVSSLYFVLAITPSIFGAR

Query:  TSRTSTHTPGMLPNSFFQGIGQEASSLEGELMCDQKGTKRWPMLLTSGERS
          RT THTPGMLP++F QGIG+EASSLEGEL C++K + RWPML TSGE S
Subjt:  TSRTSTHTPGMLPNSFFQGIGQEASSLEGELMCDQKGTKRWPMLLTSGERS

TrEMBL top hitse value%identityAlignment
A0A5A7V5J2 Non-LTR retroelement reverse transcriptase-like protein2.8e-5549.02Show/hide
Query:  TPTPGMLPDMFSQGIGRKASLLEGELSEGNGLSSRTSDALPKKTRARMHRNNFSCPRVKTGPKTVSSLCFVFAISFSIFGAHTPRTSTHTPGMLPDT---
        T TPGM+ D F  GIG +AS LEGEL E NGLSS+ S A P KTRARM R  FS P  K+GP TVSSLC V  IS SIFGA T RTSTHT GMLPDT   
Subjt:  TPTPGMLPDMFSQGIGRKASLLEGELSEGNGLSSRTSDALPKKTRARMHRNNFSCPRVKTGPKTVSSLCFVFAISFSIFGAHTPRTSTHTPGMLPDT---

Query:  ----------------------------------------------FYSGIGWEPSSLEEEL---RKRE------------------------------S
                                                      F+S +  E SSLEEEL    KR                               +
Subjt:  ----------------------------------------------FYSGIGWEPSSLEEEL---RKRE------------------------------S

Query:  SRISGARAKKTRARTPQTHFSRPGVKTDPSTVSSLYFVLAITPSIFGARTSRTSTHTPGMLPNSFFQGIGQEASSLEGELMCDQKGTKRWPMLLTSGERS
        SR SGA  KKTRAR P++ FSR G K+D  TVSSL FVL I  SIF ART RTSTHT GMLP+ F +GIGQEASSLEGEL C+ K +KRW ML TS ERS
Subjt:  SRISGARAKKTRARTPQTHFSRPGVKTDPSTVSSLYFVLAITPSIFGARTSRTSTHTPGMLPNSFFQGIGQEASSLEGELMCDQKGTKRWPMLLTSGERS

Query:  FDVRNH
          +RNH
Subjt:  FDVRNH

A0A5A7VGQ5 Uncharacterized protein7.1e-2742.23Show/hide
Query:  LTPTPGMLPDMFSQGIGRKASLLEGELSEGNGLSSRTSDALPKKTRARMHRNNFSCPRVKTGPKTVSSLCFVFAISFSIFGAHTP-------RTSTHTPG
        +T  PG++P  F QGIG+KASLLEG+LS+GNGLSSRTS  LP+K R RM R     P V+            +  + S+   H P       R+     G
Subjt:  LTPTPGMLPDMFSQGIGRKASLLEGELSEGNGLSSRTSDALPKKTRARMHRNNFSCPRVKTGPKTVSSLCFVFAISFSIFGAHTP-------RTSTHTPG

Query:  MLPDTFYSGIGWEPSSLEEELRKRESSRISGARAKKTRARTPQTHFSRPGVKTDPSTVSSLYFVLAITPSIFGARTSRTSTHTPGMLPNSFFQGIGQEAS
             F  G G              SSR SG R++K RAR P+T F    VK+ P+TVS    V  I+ S FG    RTS + PG++P+ F QGIG E S
Subjt:  MLPDTFYSGIGWEPSSLEEELRKRESSRISGARAKKTRARTPQTHFSRPGVKTDPSTVSSLYFVLAITPSIFGARTSRTSTHTPGMLPNSFFQGIGQEAS

Query:  SLEGEL
        SLEGEL
Subjt:  SLEGEL

A0A5D3BG85 Uncharacterized protein2.7e-2642.23Show/hide
Query:  LTPTPGMLPDMFSQGIGRKASLLEGELSEGNGLSSRTSDALPKKTRARMHRNNFSCPRVKTGPKTVSSLCFVFAISFSIFGAHTP-------RTSTHTPG
        +T  PG++P  F QGIGRKASLLEG+LS+GNGLSSRTS  LP+K R RM R     P V+            +  + S+   H P       R+     G
Subjt:  LTPTPGMLPDMFSQGIGRKASLLEGELSEGNGLSSRTSDALPKKTRARMHRNNFSCPRVKTGPKTVSSLCFVFAISFSIFGAHTP-------RTSTHTPG

Query:  MLPDTFYSGIGWEPSSLEEELRKRESSRISGARAKKTRARTPQTHFSRPGVKTDPSTVSSLYFVLAITPSIFGARTSRTSTHTPGMLPNSFFQGIGQEAS
             F  G G              SSR SG R++K RAR P+T F    VK+ P+TVS    V  I+ S F     RTS + PG++P+ F QGIG E S
Subjt:  MLPDTFYSGIGWEPSSLEEELRKRESSRISGARAKKTRARTPQTHFSRPGVKTDPSTVSSLYFVLAITPSIFGARTSRTSTHTPGMLPNSFFQGIGQEAS

Query:  SLEGEL
        SLEGEL
Subjt:  SLEGEL

A0A5D3DFP2 Uncharacterized protein9.9e-3751.78Show/hide
Query:  EGNGLSSRTSDALPKKTRARMHRNNFSCPRVKTGPKTVSSLCFVFAISFSIFGAHTPRTSTHTPGMLPDTFYSGIGWEPSSLEEELRKRESSRISGARAK
        EGNGLSSRTS A PKKTRARM +  FS P  K+ P TVS+LC V   S SIFGA TPRTSTHTPGMLPDTF                +RE  R+S     
Subjt:  EGNGLSSRTSDALPKKTRARMHRNNFSCPRVKTGPKTVSSLCFVFAISFSIFGAHTPRTSTHTPGMLPDTFYSGIGWEPSSLEEELRKRESSRISGARAK

Query:  KTRARTPQTHFSRPGVKTDPSTVSSLYFVLAITPSIFGARTSRTSTHTPGMLPNSFFQGIGQEASSLEGELMCDQKGTKRWPMLLTSGERSFDVRNH
                  F   G    P     L  +   +  + G+ T RTSTHT GMLP++F  GIG+EASSLEGEL+CD K +KRWPML T GERS   RNH
Subjt:  KTRARTPQTHFSRPGVKTDPSTVSSLYFVLAITPSIFGARTSRTSTHTPGMLPNSFFQGIGQEASSLEGELMCDQKGTKRWPMLLTSGERSFDVRNH

A0A5D3DIF8 Gag/pol protein3.2e-4348.61Show/hide
Query:  TPTPGMLPDMFSQGIGRKASLLEGELSEGNGLSSRTSDALPKKTRARMHRNNFSCPRVKTGPKTVSSLCFVFAISFSIFGAHTPRTSTHTPGMLPDTFYS
        T TPGMLP+ FSQGIGR+ASLLEGELS+ N LSSR S   PKK       ++      KT  +TVSSL F+  IS  IFGAHTPRTSTHT  MLPD F  
Subjt:  TPTPGMLPDMFSQGIGRKASLLEGELSEGNGLSSRTSDALPKKTRARMHRNNFSCPRVKTGPKTVSSLCFVFAISFSIFGAHTPRTSTHTPGMLPDTFYS

Query:  GIGWEPSSLEEEL---------------------------------RKRESSRISGARAKKTRARTPQTHFSRPGVKTDPSTVSSLYFVLAITPSIFGAR
        GIG E SSLE EL                                 R R  SR S    KKT AR PQT F RP                          
Subjt:  GIGWEPSSLEEEL---------------------------------RKRESSRISGARAKKTRARTPQTHFSRPGVKTDPSTVSSLYFVLAITPSIFGAR

Query:  TSRTSTHTPGMLPNSFFQGIGQEASSLEGELMCDQKGTKRWPMLLTSGERS
          RT THTPGMLP++F QGIG+EASSLEGEL C++K + RWPML TSGE S
Subjt:  TSRTSTHTPGMLPNSFFQGIGQEASSLEGELMCDQKGTKRWPMLLTSGERS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTGCTCGTCCCTAGAAAGCACGAGCGAGAATGTCCCGGACCCAATTTTCTCGACTCGTACTTCGAGGACCTCACCCCCACTCCTGGCATGCTCCCTGACATGTTTTC
ACAAGGTATAGGTCGAAAAGCGAGCTTGTTGGAGGGAGAACTGAGCGAAGGAAACGGGCTGAGCTCGAGGACTTCCGATGCTCTTCCCAAGAAAACGCGAGCGAGAATGC
ACCGAAATAACTTTTCTTGTCCTAGGGTAAAAACAGGTCCCAAGACGGTTTCTTCCCTCTGCTTCGTATTTGCCATAAGTTTTTCGATCTTCGGGGCTCATACTCCGAGG
ACCTCAACCCACACTCCTGGCATGCTCCCTGACACGTTTTACAGTGGTATAGGTTGGGAACCGAGCTCGTTGGAGGAAGAACTGAGGAAAAGGGAGAGCTCGAGGATTTC
TGGTGCTCGTGCCAAGAAAACGCGAGCAAGAACGCCCCAGACTCATTTTTCTCGTCCTGGGGTAAAAACTGATCCCTCGACGGTTTCTTCCCTTTACTTCGTATTGGCCA
TAACTCCTTCGATCTTTGGAGCCCGTACTTCGAGGACCTCAACCCACACTCCTGGCATGCTTCCTAACTCGTTTTTCCAAGGTATAGGTCAGGAAGCGAGCTCGTTGGAG
GGAGAATTGATGTGCGACCAAAAAGGAACCAAAAGATGGCCAATGCTTCTAACCAGTGGCGAACGCTCGTTCGATGTCAGAAACCACTAG
mRNA sequenceShow/hide mRNA sequence
ATGGTGCTCGTCCCTAGAAAGCACGAGCGAGAATGTCCCGGACCCAATTTTCTCGACTCGTACTTCGAGGACCTCACCCCCACTCCTGGCATGCTCCCTGACATGTTTTC
ACAAGGTATAGGTCGAAAAGCGAGCTTGTTGGAGGGAGAACTGAGCGAAGGAAACGGGCTGAGCTCGAGGACTTCCGATGCTCTTCCCAAGAAAACGCGAGCGAGAATGC
ACCGAAATAACTTTTCTTGTCCTAGGGTAAAAACAGGTCCCAAGACGGTTTCTTCCCTCTGCTTCGTATTTGCCATAAGTTTTTCGATCTTCGGGGCTCATACTCCGAGG
ACCTCAACCCACACTCCTGGCATGCTCCCTGACACGTTTTACAGTGGTATAGGTTGGGAACCGAGCTCGTTGGAGGAAGAACTGAGGAAAAGGGAGAGCTCGAGGATTTC
TGGTGCTCGTGCCAAGAAAACGCGAGCAAGAACGCCCCAGACTCATTTTTCTCGTCCTGGGGTAAAAACTGATCCCTCGACGGTTTCTTCCCTTTACTTCGTATTGGCCA
TAACTCCTTCGATCTTTGGAGCCCGTACTTCGAGGACCTCAACCCACACTCCTGGCATGCTTCCTAACTCGTTTTTCCAAGGTATAGGTCAGGAAGCGAGCTCGTTGGAG
GGAGAATTGATGTGCGACCAAAAAGGAACCAAAAGATGGCCAATGCTTCTAACCAGTGGCGAACGCTCGTTCGATGTCAGAAACCACTAG
Protein sequenceShow/hide protein sequence
MVLVPRKHERECPGPNFLDSYFEDLTPTPGMLPDMFSQGIGRKASLLEGELSEGNGLSSRTSDALPKKTRARMHRNNFSCPRVKTGPKTVSSLCFVFAISFSIFGAHTPR
TSTHTPGMLPDTFYSGIGWEPSSLEEELRKRESSRISGARAKKTRARTPQTHFSRPGVKTDPSTVSSLYFVLAITPSIFGARTSRTSTHTPGMLPNSFFQGIGQEASSLE
GELMCDQKGTKRWPMLLTSGERSFDVRNH