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IVF0021355 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0021355
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionRetrotransposon gag protein
Genome locationchr06:22950862..22951347
RNA-Seq ExpressionIVF0021355
SyntenyIVF0021355
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0033278.1 hypothetical protein E6C27_scaffold845G00800 [Cucumis melo var. makuwa]1.04e-1738.86Show/hide
Query:  MCYSREDHHLHL-LTCVTTERIIIIIFIFNAVWCRRSSSSRRCDVDDHHLQCGVDNHHHHLQCGIVETIIIFIFNAAQLRQSSSSS-------------Q
        MC S++D+HLH  L CV  ++I I  FIF+ V+  R SSS    +    + C             +E IIIFIF+AAQ R+SSSSS              
Subjt:  MCYSREDHHLHL-LTCVTTERIIIIIFIFNAVWCRRSSSSRRCDVDDHHLQCGVDNHHHHLQCGIVETIIIFIFNAAQLRQSSSSS-------------Q

Query:  YGTAETIFIFIFNAAQPRRSPSSSTSIISIFHAVQPIRSSSSSSMQHNQDDHHLYLQCNAAEAIFISIFEAVQPR
         G AET+ +FIF+AAQ RRS                   SSSS M+ ++D H L+L C AAE + + IF A Q R
Subjt:  YGTAETIFIFIFNAAQPRRSPSSSTSIISIFHAVQPIRSSSSSSMQHNQDDHHLYLQCNAAEAIFISIFEAVQPR

KAA0039121.1 hypothetical protein E6C27_scaffold121G00100 [Cucumis melo var. makuwa]5.05e-2141.97Show/hide
Query:  MCYSREDHHLHLLTCVTTERIIIIIFIFNAVWCRRSSSSRRCDVDDHHLQCGVDNHHHHLQCGIVETIIIFIFN-AAQLRQSSSSSQYGTAETIFIFIFN
        MC S+EDHHLHLLTCV  ERIII IF  +     RS        +D HL        H   C   + IIIFIF+   Q R SSSSS   T ETI  FIFN
Subjt:  MCYSREDHHLHLLTCVTTERIIIIIFIFNAVWCRRSSSSRRCDVDDHHLQCGVDNHHHHLQCGIVETIIIFIFN-AAQLRQSSSSSQYGTAETIFIFIFN

Query:  AAQPRRSPSSSTSIISIFHAVQPI---------------------------RSSSSSSMQHNQDDHHLYLQCNAAEA------IFISIFEAVQ
        A   R   ++   II IF+AVQ                             RSSSSSSM+H+++DHHL+LQC+A EA      + I IF  +Q
Subjt:  AAQPRRSPSSSTSIISIFHAVQPI---------------------------RSSSSSSMQHNQDDHHLYLQCNAAEA------IFISIFEAVQ

KAA0047505.1 hypothetical protein E6C27_scaffold498G001320 [Cucumis melo var. makuwa]1.02e-1735.19Show/hide
Query:  MCYSREDHHLHLLTCVTTERIIIIIFIFNA---------------------------------VWCRR-------SSSSRRCDVDDHHL--QC---GVDN
        MCYS+E HHL+LLTCV  E+I I  FIF+                                  ++C         SSSS  C  +DHHL  QC   G D+
Subjt:  MCYSREDHHLHLLTCVTTERIIIIIFIFNA---------------------------------VWCRR-------SSSSRRCDVDDHHL--QC---GVDN

Query:  HHHHLQCGIVETIIIFIFNAAQLRQSSSSS-------------QYGTAETIFIFIFNAAQPRRSPSSSTSIISIFHAVQPIRSSSSSSMQHNQDDHHLYL
         H  LQ    E II+FIFN AQ ++SSSSS             Q G AETI IFI N                                     DHHL+L
Subjt:  HHHHLQCGIVETIIIFIFNAAQLRQSSSSS-------------QYGTAETIFIFIFNAAQPRRSPSSSTSIISIFHAVQPIRSSSSSSMQHNQDDHHLYL

Query:  QCNAAEAIFISIFEAV
        QC+AAEAI I  F AV
Subjt:  QCNAAEAIFISIFEAV

TYK21322.1 glial fibrillary acidic protein-like [Cucumis melo var. makuwa]3.97e-1938.55Show/hide
Query:  MCYSREDHHLHLLTCVTTERIIIIIFIFNAVWCRRSSSSRRCDVDDHHLQ-----------------CGVDNHHHHLQCGI------VETIIIFIFNAAQ
        +C SREDHH HL TCV T+++++     N +  RRSSS   C  +DH  +                 C +D+H+ HLQ  I      V+TIII IF+  Q
Subjt:  MCYSREDHHLHLLTCVTTERIIIIIFIFNAVWCRRSSSSRRCDVDDHHLQ-----------------CGVDNHHHHLQCGI------VETIIIFIFNAAQ

Query:  LRQSSSSSQYGTAETIFIFIFNAAQPRRSPSSSTSIISIFHAVQPIRSSSSSSMQHNQDDHHLYLQCNAAEAIFISIFE
        LR SSS S    +              R  +    IISIF   Q   SSS SSM  ++  HHL+L+C A EAI ISIF+
Subjt:  LRQSSSSSQYGTAETIFIFIFNAAQPRRSPSSSTSIISIFHAVQPIRSSSSSSMQHNQDDHHLYLQCNAAEAIFISIFE

TYK26477.1 hypothetical protein E5676_scaffold313G00420 [Cucumis melo var. makuwa]5.01e-2037.76Show/hide
Query:  MCYSREDHHLHLLTCVT----------------TERII--------IIIFIFNAVWCRR--------------SSSSRRCDVDDHHLQCGVDNHHHHLQC
        +C SRE+HH HLLTCVT                TERII        IIIFIFN +   R              SSS+  C  +DHH       HH HLQC
Subjt:  MCYSREDHHLHLLTCVT----------------TERII--------IIIFIFNAVWCRR--------------SSSSRRCDVDDHHLQCGVDNHHHHLQC

Query:  GIVETIIIFIFNAAQLRQSSSSSQYGTAETIFIFIFNAAQPRRSPSSSTSIISIFHAVQPIRSSSSSSMQHNQDDHHLYLQCNAAEAIFISIFEAV
           + IIIF+FN              T   IFIF+FN  QPR S                   SSSSSM  +++D HL+LQC AAE I I I   +
Subjt:  GIVETIIIFIFNAAQLRQSSSSSQYGTAETIFIFIFNAAQPRRSPSSSTSIISIFHAVQPIRSSSSSSMQHNQDDHHLYLQCNAAEAIFISIFEAV

TrEMBL top hitse value%identityAlignment
A0A5A7SRV7 Uncharacterized protein1.6e-1944.39Show/hide
Query:  YSREDHHLHLLTCVTTERIIIIIFIFNAVWCRRS---SSSRRCDVDDHHLQCGVDNHHHHLQCGIVETIIIFIF-NAAQLRQSSSSSQYGTA-----ETI
        +SRED  LH L CV  ER  I IFIF+ +   R    SSS  C   D+HL       H HLQC   + I IFIF +  +LR SSSSS   ++     E I
Subjt:  YSREDHHLHLLTCVTTERIIIIIFIFNAVWCRRS---SSSRRCDVDDHHLQCGVDNHHHHLQCGIVETIIIFIF-NAAQLRQSSSSSQYGTA-----ETI

Query:  FIFIFNAAQPRRSPSSS-------------------TSIISIFHAVQPIRSSSSSSMQHNQDDHHLYLQCNAAEAIFISIFEAVQPR
         IFIF+AAQ RRS SSS                   T I+ IFHA Q  RSSSSS M+ ++D H L+L C AAE + + IF A Q R
Subjt:  FIFIFNAAQPRRSPSSS-------------------TSIISIFHAVQPIRSSSSSSMQHNQDDHHLYLQCNAAEAIFISIFEAVQPR

A0A5A7TBX4 Uncharacterized protein3.9e-1841.45Show/hide
Query:  MCYSREDHHLHLLTCVTTERIIIIIFIFNAVWCRRSSSSRRCDVDDHHLQCGVDNHHHHLQCGIVETIIIFIF-NAAQLRQSSSSSQYGTAETIFIFIFN
        MC S+EDHHLHLLTCV  ERIII IF  +     RS                 D H H   C   + IIIFIF +  Q R SSSSS   T ETI  FIFN
Subjt:  MCYSREDHHLHLLTCVTTERIIIIIFIFNAVWCRRSSSSRRCDVDDHHLQCGVDNHHHHLQCGIVETIIIFIF-NAAQLRQSSSSSQYGTAETIFIFIFN

Query:  AAQPRRSPSSSTSIISIFHAVQ---------------------------PIRSSSSSSMQHNQDDHHLYLQCN------AAEAIFISIFEAVQ
        A   R   ++   II IF+AVQ                             RSSSSSSM+H+++DHHL+LQC+      AAE + I IF  +Q
Subjt:  AAQPRRSPSSSTSIISIFHAVQ---------------------------PIRSSSSSSMQHNQDDHHLYLQCN------AAEAIFISIFEAVQ

A0A5D3BVC5 Retrotransposon gag protein1.3e-1339.41Show/hide
Query:  MCYSREDHHLHLLTCVTTERIIIIIF------------IFNAVWCRR---------------SSSSRRCDVDDHHLQCGVDNHH-HHLQCGIVETIIIFI
        +C SREDHHLHLLTCV  ER II IF             F+  + R                SSS   C   D HL+   ++HH H L C   + IIIFI
Subjt:  MCYSREDHHLHLLTCVTTERIIIIIF------------IFNAVWCRR---------------SSSSRRCDVDDHHLQCGVDNHH-HHLQCGIVETIIIFI

Query:  FNAAQLRQSSSSSQ--YGTAETIFIFIFNAAQPRRSPSSSTSIISIF---HAVQPIRSSSSSSMQH----NQDDH-HLY-LQCNAAEAIFISIF---EAV
        FN  Q R S SSS   Y + E + +            S+   II IF   H +QP  SSSSSS  H     +D H HLY L C AAE I I IF     +
Subjt:  FNAAQLRQSSSSSQ--YGTAETIFIFIFNAAQPRRSPSSSTSIISIF---HAVQPIRSSSSSSMQH----NQDDH-HLY-LQCNAAEAIFISIF---EAV

Query:  QPR
        QP+
Subjt:  QPR

A0A5D3DCM3 Glial fibrillary acidic protein-like9.6e-1738.55Show/hide
Query:  MCYSREDHHLHLLTCVTTERIIIIIFIFNAVWCRRSSSSRRCDVDDHHLQ-----------------CGVDNHHHHLQCGI------VETIIIFIFNAAQ
        +C SREDHH HL TCV T++++    + N +  RRSSS   C  +DH  +                 C +D+H+ HLQ  I      V+TIII IF+  Q
Subjt:  MCYSREDHHLHLLTCVTTERIIIIIFIFNAVWCRRSSSSRRCDVDDHHLQ-----------------CGVDNHHHHLQCGI------VETIIIFIFNAAQ

Query:  LRQSSSSSQYGTAETIFIFIFNAAQPRRSPSSSTSIISIFHAVQPIRSSSSSSMQHNQDDHHLYLQCNAAEAIFISIFE
        LR SSS S    +              R  +    IISIF   Q   SSS SSM  ++  HHL+L+C A EAI ISIF+
Subjt:  LRQSSSSSQYGTAETIFIFIFNAAQPRRSPSSSTSIISIFHAVQPIRSSSSSSMQHNQDDHHLYLQCNAAEAIFISIFE

A0A5D3DRX7 Uncharacterized protein7.4e-1737.76Show/hide
Query:  MCYSREDHHLHLLTCVT----------------TERI--------IIIIFIFNAVWCRR--------------SSSSRRCDVDDHHLQCGVDNHHHHLQC
        +C SRE+HH HLLTCVT                TERI        IIIIFIFN +   R              SSS+  C  +DHH       HH HLQC
Subjt:  MCYSREDHHLHLLTCVT----------------TERI--------IIIIFIFNAVWCRR--------------SSSSRRCDVDDHHLQCGVDNHHHHLQC

Query:  GIVETIIIFIFNAAQLRQSSSSSQYGTAETIFIFIFNAAQPRRSPSSSTSIISIFHAVQPIRSSSSSSMQHNQDDHHLYLQCNAAEAIFISIFEAV
           + IIIF+FN              T   IFIF+FN  QPR                    SSSSSSM  +++D HL+LQC AAE I I I   +
Subjt:  GIVETIIIFIFNAAQLRQSSSSSQYGTAETIFIFIFNAAQPRRSPSSSTSIISIFHAVQPIRSSSSSSMQHNQDDHHLYLQCNAAEAIFISIFEAV

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTGTTACAGCCGAGAGGATCATCATCTTCATCTTCTCACATGTGTTACAACCGAGAGGATCATCATCATCATCTTCATCTTCAATGCAGTGTGGTGCAGACGATCATC
ATCTTCAAGACGGTGCGACGTAGACGATCATCATCTTCAATGCGGTGTAGACAATCATCATCATCATCTTCAATGTGGCATAGTAGAGACGATCATCATCTTCATCTTCA
ATGCGGCGCAATTGAGACAATCATCATCTTCATCTCAATACGGTACAGCCGAGACGATCTTCATCTTCATCTTTAATGCAGCGCAACCAAGACGATCTCCGTCTTCATCG
ACAAGCATCATCTCCATCTTCCATGCGGTGCAACCAATACGATCTTCATCTTCATCTTCAATGCAGCACAACCAAGACGATCATCATCTCTATCTTCAATGCAACGCAGC
CGAGGCGATCTTCATCTCGATCTTCGAAGCGGTGCAACCAAGGTGA
mRNA sequenceShow/hide mRNA sequence
ATGTGTTACAGCCGAGAGGATCATCATCTTCATCTTCTCACATGTGTTACAACCGAGAGGATCATCATCATCATCTTCATCTTCAATGCAGTGTGGTGCAGACGATCATC
ATCTTCAAGACGGTGCGACGTAGACGATCATCATCTTCAATGCGGTGTAGACAATCATCATCATCATCTTCAATGTGGCATAGTAGAGACGATCATCATCTTCATCTTCA
ATGCGGCGCAATTGAGACAATCATCATCTTCATCTCAATACGGTACAGCCGAGACGATCTTCATCTTCATCTTTAATGCAGCGCAACCAAGACGATCTCCGTCTTCATCG
ACAAGCATCATCTCCATCTTCCATGCGGTGCAACCAATACGATCTTCATCTTCATCTTCAATGCAGCACAACCAAGACGATCATCATCTCTATCTTCAATGCAACGCAGC
CGAGGCGATCTTCATCTCGATCTTCGAAGCGGTGCAACCAAGGTGA
Protein sequenceShow/hide protein sequence
MCYSREDHHLHLLTCVTTERIIIIIFIFNAVWCRRSSSSRRCDVDDHHLQCGVDNHHHHLQCGIVETIIIFIFNAAQLRQSSSSSQYGTAETIFIFIFNAAQPRRSPSSS
TSIISIFHAVQPIRSSSSSSMQHNQDDHHLYLQCNAAEAIFISIFEAVQPR