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IVF0021490 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0021490
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionGag/pol protein
Genome locationchr05:19921985..19922335
RNA-Seq ExpressionIVF0021490
SyntenyIVF0021490
Gene Ontology termsGO:0006278 - RNA-dependent DNA biosynthetic process (biological process)
GO:0006388 - tRNA splicing, via endonucleolytic cleavage and ligation (biological process)
GO:0006508 - proteolysis (biological process)
GO:0016021 - integral component of membrane (cellular component)
GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
GO:0003972 - RNA ligase (ATP) activity (molecular function)
GO:0008234 - cysteine-type peptidase activity (molecular function)
GO:0046872 - metal ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0037172.1 putative nuclease HARBI1 [Cucumis melo var. makuwa]6.15e-4181.25Show/hide
Query:  MLPTSGERSSSVRNHWKCTCSEGNKLSSRTSSVRPKKTRARMPRTQFSRPGAKSGPLTVSSLCFVLVISLSIIFGAHSPRTSTHTSGMLPDTFSQG
        MLPTSGER   VRNHWKC CSEGN LSSRTS  RPKKTRARMP TQFSRPG KS P TVSSLCFVL ISLSI F A + RTSTHT GMLPDTFSQG
Subjt:  MLPTSGERSSSVRNHWKCTCSEGNKLSSRTSSVRPKKTRARMPRTQFSRPGAKSGPLTVSSLCFVLVISLSIIFGAHSPRTSTHTSGMLPDTFSQG

KAA0062888.1 non-LTR retroelement reverse transcriptase-like protein [Cucumis melo var. makuwa]5.59e-5080.17Show/hide
Query:  MLPTSGERSSSVRNHWKCTCSEGNKLSSRTSSVRPKKTRARMPRTQFSRPGAKSGPLTVSSLCFVLVISLSIIFGAHSPRTSTHTSGMLPDTFSQGIGQE
        M PT+GERSS VRNHWKCTCSEGN L+SRTS   PKKTRARMPR+QFSR GAKS   TVSSLCFVLVI+LSI F A +PRTSTHT+GMLPD FS+GIGQE
Subjt:  MLPTSGERSSSVRNHWKCTCSEGNKLSSRTSSVRPKKTRARMPRTQFSRPGAKSGPLTVSSLCFVLVISLSIIFGAHSPRTSTHTSGMLPDTFSQGIGQE

Query:  ASSLEGELRCDPKRSK
        ASSLEGEL C+PKRSK
Subjt:  ASSLEGELRCDPKRSK

TYK22521.1 uncharacterized protein E5676_scaffold387G00220 [Cucumis melo var. makuwa]1.41e-4256.47Show/hide
Query:  MLPTSGERSSSVRNHWKCTCSEGNKLSSRTSSVRPKKTRARMPRTQFSRPGAKSGPLTVSSLCFVLVISLSIIFGA------------------------
        MLPTSGERSS VRN WKCTC EGN LSSRTS  RPKKTRARMP+TQFSRPG KS P TVS+LC VLV SLSI FGA                        
Subjt:  MLPTSGERSSSVRNHWKCTCSEGNKLSSRTSSVRPKKTRARMPRTQFSRPGAKSGPLTVSSLCFVLVISLSIIFGA------------------------

Query:  ------------------------------HSPRTSTHTSGMLPDTFSQGIGQEASSLEGELRCDPKRSK
                                       +PRTSTHTSGMLPDTFS GIG+EASSLEGEL CDPK SK
Subjt:  ------------------------------HSPRTSTHTSGMLPDTFSQGIGQEASSLEGELRCDPKRSK

TYK23423.1 DUF4283 domain-containing protein [Cucumis melo var. makuwa]1.89e-3365.29Show/hide
Query:  MLPTSGERSSSVRNHWKCTCSEGNKLSSRTSSVRPKKTRARMPRTQFSRPGAKSGPLTVSSLCFVLVISLSIIFGAHSPRTSTHTSGML-----PDTFSQ
        MLPTS ER S VRNHWK TCSEGN L+SRTSSVR KKTRARMP+T  S PGAKS P  VSSLCFVLVISLSI FGA +PR STHTSGML     P ++  
Subjt:  MLPTSGERSSSVRNHWKCTCSEGNKLSSRTSSVRPKKTRARMPRTQFSRPGAKSGPLTVSSLCFVLVISLSIIFGAHSPRTSTHTSGML-----PDTFSQ

Query:  GIG-----QEASSLEGELRCD
                +  S L GEL CD
Subjt:  GIG-----QEASSLEGELRCD

TYK23424.1 gag/pol protein [Cucumis melo var. makuwa]1.42e-3668.1Show/hide
Query:  MLPTSGERSSSVRNHWKCTCSEGNKLSSRTSSVRPKKTRARMPRTQFSRPGAKSGPLTVSSLCFVLVISLSIIFGAHSPRTSTHTSGMLPDTFSQGIGQE
        MLPTSGERSS VRNHWKCTCSEGN LSSRT    PKKT AR P+ QFS  G KSG  TVSSL  +L I   ++FGA +P  STHT  ML  T S GIG+E
Subjt:  MLPTSGERSSSVRNHWKCTCSEGNKLSSRTSSVRPKKTRARMPRTQFSRPGAKSGPLTVSSLCFVLVISLSIIFGAHSPRTSTHTSGMLPDTFSQGIGQE

Query:  ASSLEGELRCDPKRSK
        ASSLE EL CDPKRSK
Subjt:  ASSLEGELRCDPKRSK

TrEMBL top hitse value%identityAlignment
A0A5A7V5J2 Non-LTR retroelement reverse transcriptase-like protein1.1e-4180.17Show/hide
Query:  MLPTSGERSSSVRNHWKCTCSEGNKLSSRTSSVRPKKTRARMPRTQFSRPGAKSGPLTVSSLCFVLVISLSIIFGAHSPRTSTHTSGMLPDTFSQGIGQE
        M PT+GERSS VRNHWKCTCSEGN L+SRTS   PKKTRARMPR+QFSR GAKS   TVSSLCFVLVI+LS IF A +PRTSTHT+GMLPD FS+GIGQE
Subjt:  MLPTSGERSSSVRNHWKCTCSEGNKLSSRTSSVRPKKTRARMPRTQFSRPGAKSGPLTVSSLCFVLVISLSIIFGAHSPRTSTHTSGMLPDTFSQGIGQE

Query:  ASSLEGELRCDPKRSK
        ASSLEGEL C+PKRSK
Subjt:  ASSLEGELRCDPKRSK

A0A5D3CQ36 Putative nuclease HARBI19.9e-3281.25Show/hide
Query:  MLPTSGERSSSVRNHWKCTCSEGNKLSSRTSSVRPKKTRARMPRTQFSRPGAKSGPLTVSSLCFVLVISLSIIFGAHSPRTSTHTSGMLPDTFSQG
        MLPTSGER   VRNHWKC CSEGN LSSRTS  RPKKTRARMP TQFSRPG KS P TVSSLCFVL ISLS IF A + RTSTHT GMLPDTFSQG
Subjt:  MLPTSGERSSSVRNHWKCTCSEGNKLSSRTSSVRPKKTRARMPRTQFSRPGAKSGPLTVSSLCFVLVISLSIIFGAHSPRTSTHTSGMLPDTFSQG

A0A5D3DFP2 Uncharacterized protein7.4e-3556.47Show/hide
Query:  MLPTSGERSSSVRNHWKCTCSEGNKLSSRTSSVRPKKTRARMPRTQFSRPGAKSGPLTVSSLCFVLVISLSIIFGA------------------------
        MLPTSGERSS VRN WKCTC EGN LSSRTS  RPKKTRARMP+TQFSRPG KS P TVS+LC VLV SLS IFGA                        
Subjt:  MLPTSGERSSSVRNHWKCTCSEGNKLSSRTSSVRPKKTRARMPRTQFSRPGAKSGPLTVSSLCFVLVISLSIIFGA------------------------

Query:  ------------------------------HSPRTSTHTSGMLPDTFSQGIGQEASSLEGELRCDPKRSK
                                       +PRTSTHTSGMLPDTFS GIG+EASSLEGEL CDPK SK
Subjt:  ------------------------------HSPRTSTHTSGMLPDTFSQGIGQEASSLEGELRCDPKRSK

A0A5D3DIF8 Gag/pol protein4.2e-3068.1Show/hide
Query:  MLPTSGERSSSVRNHWKCTCSEGNKLSSRTSSVRPKKTRARMPRTQFSRPGAKSGPLTVSSLCFVLVISLSIIFGAHSPRTSTHTSGMLPDTFSQGIGQE
        MLPTSGERSS VRNHWKCTCSEGN LSSRT    PKKT AR P+ QFS  G KSG  TVSSL  +L I   ++FGA +P  STHT  ML  T S GIG+E
Subjt:  MLPTSGERSSSVRNHWKCTCSEGNKLSSRTSSVRPKKTRARMPRTQFSRPGAKSGPLTVSSLCFVLVISLSIIFGAHSPRTSTHTSGMLPDTFSQGIGQE

Query:  ASSLEGELRCDPKRSK
        ASSLE EL CDPKRSK
Subjt:  ASSLEGELRCDPKRSK

A0A5D3DIK9 DUF4283 domain-containing protein7.4e-2765.29Show/hide
Query:  MLPTSGERSSSVRNHWKCTCSEGNKLSSRTSSVRPKKTRARMPRTQFSRPGAKSGPLTVSSLCFVLVISLSIIFGAHSPRTSTHTSGML-----PDTFSQ
        MLPTS ER S VRNHWK TCSEGN L+SRTSSVR KKTRARMP+T  S PGAKS P  VSSLCFVLVISLS IFGA +PR STHTSGML     P ++  
Subjt:  MLPTSGERSSSVRNHWKCTCSEGNKLSSRTSSVRPKKTRARMPRTQFSRPGAKSGPLTVSSLCFVLVISLSIIFGAHSPRTSTHTSGML-----PDTFSQ

Query:  GIG-----QEASSLEGELRCD
                +  S L GEL CD
Subjt:  GIG-----QEASSLEGELRCD

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCTTCCAACGAGTGGTGAACGCTCGTCCAGTGTTAGAAATCACTGGAAATGCACTTGCAGCGAAGGAAACAAGCTGAGCTCGAGGACTTCCAGTGTTCGTCCCAAGAA
AACGCGAGCGAGAATGCCCCGGACTCAGTTTTCTCGTCCTGGGGCAAAAAGCGGTCCCCTAACAGTTTCTTCCCTTTGCTTCGTATTGGTCATAAGTCTCTCGATTATCT
TTGGGGCTCATAGTCCGAGAACTTCAACCCATACTTCTGGCATGCTCCCTGACACGTTTTCCCAAGGTATAGGTCAGGAAGCGAGCTCGTTGGAGGGAGAACTGAGGTGC
GATCCAAAACGGTCCAAATGA
mRNA sequenceShow/hide mRNA sequence
ATGCTTCCAACGAGTGGTGAACGCTCGTCCAGTGTTAGAAATCACTGGAAATGCACTTGCAGCGAAGGAAACAAGCTGAGCTCGAGGACTTCCAGTGTTCGTCCCAAGAA
AACGCGAGCGAGAATGCCCCGGACTCAGTTTTCTCGTCCTGGGGCAAAAAGCGGTCCCCTAACAGTTTCTTCCCTTTGCTTCGTATTGGTCATAAGTCTCTCGATTATCT
TTGGGGCTCATAGTCCGAGAACTTCAACCCATACTTCTGGCATGCTCCCTGACACGTTTTCCCAAGGTATAGGTCAGGAAGCGAGCTCGTTGGAGGGAGAACTGAGGTGC
GATCCAAAACGGTCCAAATGA
Protein sequenceShow/hide protein sequence
MLPTSGERSSSVRNHWKCTCSEGNKLSSRTSSVRPKKTRARMPRTQFSRPGAKSGPLTVSSLCFVLVISLSIIFGAHSPRTSTHTSGMLPDTFSQGIGQEASSLEGELRC
DPKRSK