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IVF0021616 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0021616
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionRibonuclease H
Genome locationchr06:24031853..24032131
RNA-Seq ExpressionIVF0021616
SyntenyIVF0021616
Gene Ontology termsGO:0006278 - RNA-dependent DNA biosynthetic process (biological process)
GO:0006310 - DNA recombination (biological process)
GO:0015074 - DNA integration (biological process)
GO:0090502 - RNA phosphodiester bond hydrolysis, endonucleolytic (biological process)
GO:0005634 - nucleus (cellular component)
GO:0030430 - host cell cytoplasm (cellular component)
GO:0003723 - RNA binding (molecular function)
GO:0003887 - DNA-directed DNA polymerase activity (molecular function)
GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR036397 - Ribonuclease H superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0033844.1 putative RNA-directed DNA polymerase (Reverse transcriptase), Ribonuclease H [Cucumis melo var. makuwa]8.71e-3568.48Show/hide
Query:  MTITYKDCHEMLPFALHGYRTSVRTSTEATPFSLVYGVEAVLPIEID-----------LKEAKWTQGRYEELNLIEERRLATLYRGQLYQRK
        MT+ YKD HEMLPFALHGYRTSVRTS  ATPFSLVYGVE VLPIE++           L+E +WTQ RY+ELNLI+ERRL  L RGQLYQ+K
Subjt:  MTITYKDCHEMLPFALHGYRTSVRTSTEATPFSLVYGVEAVLPIEID-----------LKEAKWTQGRYEELNLIEERRLATLYRGQLYQRK
KAA0038143.1 Pol polyprotein [Cucumis melo var. makuwa]4.05e-3367.39Show/hide
Query:  MTITYKDCHEMLPFALHGYRTSVRTSTEATPFSLVYGVEAVLPIEID-----------LKEAKWTQGRYEELNLIEERRLATLYRGQLYQRK
        MTITYKD HEMLPFALHGYRTSVRTST ATPFSLVYG+EAVLP+E++           L EA+W +GRYE+LN +EE++LA L  GQLYQR+
Subjt:  MTITYKDCHEMLPFALHGYRTSVRTSTEATPFSLVYGVEAVLPIEID-----------LKEAKWTQGRYEELNLIEERRLATLYRGQLYQRK
KAA0044917.1 RNA-directed DNA polymerase (Reverse transcriptase), Ribonuclease H [Cucumis melo var. makuwa]4.85e-3367.39Show/hide
Query:  MTITYKDCHEMLPFALHGYRTSVRTSTEATPFSLVYGVEAVLPIEID-----------LKEAKWTQGRYEELNLIEERRLATLYRGQLYQRK
        MTITYKD HEMLPFALHGYRTSVRTST AT FSLVYG+E VLP+E++           L EA+W +GRYE+LN +EE+RLATL  GQLYQR+
Subjt:  MTITYKDCHEMLPFALHGYRTSVRTSTEATPFSLVYGVEAVLPIEID-----------LKEAKWTQGRYEELNLIEERRLATLYRGQLYQRK
TYK20464.1 putative RNA-directed DNA polymerase (Reverse transcriptase), Ribonuclease H [Cucumis melo var. makuwa]2.00e-3267.39Show/hide
Query:  MTITYKDCHEMLPFALHGYRTSVRTSTEATPFSLVYGVEAVLPIEID-----------LKEAKWTQGRYEELNLIEERRLATLYRGQLYQRK
        MTITYKD HEMLPFALHGYRTSVRTST ATPFSLVYG+EAVLP+E++           L EA+W +GRYE+LN +EE++LA L  GQLYQR+
Subjt:  MTITYKDCHEMLPFALHGYRTSVRTSTEATPFSLVYGVEAVLPIEID-----------LKEAKWTQGRYEELNLIEERRLATLYRGQLYQRK
XP_022150030.1 LOW QUALITY PROTEIN: uncharacterized protein LOC111018303 [Momordica charantia]2.08e-3268.48Show/hide
Query:  MTITYKDCHEMLPFALHGYRTSVRTSTEATPFSLVYGVEAVLPIEID-----------LKEAKWTQGRYEELNLIEERRLATLYRGQLYQRK
        MT+TY+D HEMLPFALHGYRTSVRTST ATPFSLVYG+EAVLPIE++           L+EA+W Q RYE+LN +EE+RL  LYRGQLYQR+
Subjt:  MTITYKDCHEMLPFALHGYRTSVRTSTEATPFSLVYGVEAVLPIEID-----------LKEAKWTQGRYEELNLIEERRLATLYRGQLYQRK
TrEMBL top hitse value%identityAlignment
A0A2Z6PIN5 Ribonuclease H1.3e-2567.39Show/hide
Query:  MTITYKDCHEMLPFALHGYRTSVRTSTEATPFSLVYGVEAVLPIEID-----------LKEAKWTQGRYEELNLIEERRLATLYRGQLYQRK
        M +TYKD HEMLPFALHGYRTSVRTST ATPFSLVYG+EAVLP+E++           L EA+W Q RY++LNLIEERR+A L  GQLYQR+
Subjt:  MTITYKDCHEMLPFALHGYRTSVRTSTEATPFSLVYGVEAVLPIEID-----------LKEAKWTQGRYEELNLIEERRLATLYRGQLYQRK
A0A5A7T1X2 Ribonuclease H2.0e-2668.48Show/hide
Query:  MTITYKDCHEMLPFALHGYRTSVRTSTEATPFSLVYGVEAVLPIEID-----------LKEAKWTQGRYEELNLIEERRLATLYRGQLYQRK
        MTITYKD HEMLPFALHGYRTSVRTSTEATPFSLVYG+E VLP+E++           L EA+W +GRYE+LN +EE+RLA L  GQLYQ+K
Subjt:  MTITYKDCHEMLPFALHGYRTSVRTSTEATPFSLVYGVEAVLPIEID-----------LKEAKWTQGRYEELNLIEERRLATLYRGQLYQRK
A0A5A7T570 Pol polyprotein1.3e-2567.39Show/hide
Query:  MTITYKDCHEMLPFALHGYRTSVRTSTEATPFSLVYGVEAVLPIEID-----------LKEAKWTQGRYEELNLIEERRLATLYRGQLYQRK
        MTITYKD HEMLPFALHGYRTSVRTST ATPFSLVYG+EAVLP+E++           L EA+W +GRYE+LN +EE++LA L  GQLYQR+
Subjt:  MTITYKDCHEMLPFALHGYRTSVRTSTEATPFSLVYGVEAVLPIEID-----------LKEAKWTQGRYEELNLIEERRLATLYRGQLYQRK
A0A5D3DAC8 Putative RNA-directed DNA polymerase (Reverse transcriptase), Ribonuclease H1.3e-2567.39Show/hide
Query:  MTITYKDCHEMLPFALHGYRTSVRTSTEATPFSLVYGVEAVLPIEID-----------LKEAKWTQGRYEELNLIEERRLATLYRGQLYQRK
        MTITYKD HEMLPFALHGYRTSVRTST ATPFSLVYG+EAVLP+E++           L EA+W +GRYE+LN +EE++LA L  GQLYQR+
Subjt:  MTITYKDCHEMLPFALHGYRTSVRTSTEATPFSLVYGVEAVLPIEID-----------LKEAKWTQGRYEELNLIEERRLATLYRGQLYQRK
A0A6J1D7C7 Ribonuclease H6.7e-2768.48Show/hide
Query:  MTITYKDCHEMLPFALHGYRTSVRTSTEATPFSLVYGVEAVLPIEID-----------LKEAKWTQGRYEELNLIEERRLATLYRGQLYQRK
        MT+TY+D HEMLPFALHGYRTSVRTST ATPFSLVYG+EAVLPIE++           L+EA+W Q RYE+LN +EE+RL  LYRGQLYQR+
Subjt:  MTITYKDCHEMLPFALHGYRTSVRTSTEATPFSLVYGVEAVLPIEID-----------LKEAKWTQGRYEELNLIEERRLATLYRGQLYQRK
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACTATCACATATAAAGATTGTCATGAGATGTTACCATTTGCATTACATGGCTATCGAACGTCAGTTCGCACATCAACTGAGGCAACTCCATTCTCGCTAGTGTATGG
TGTGGAAGCTGTTTTGCCTATCGAGATCGATCTAAAGGAAGCTAAGTGGACACAGGGGAGGTACGAGGAGTTAAATCTCATAGAAGAGAGAAGGTTGGCTACATTGTACA
GAGGACAACTGTATCAACGAAAATGA
mRNA sequenceShow/hide mRNA sequence
ATGACTATCACATATAAAGATTGTCATGAGATGTTACCATTTGCATTACATGGCTATCGAACGTCAGTTCGCACATCAACTGAGGCAACTCCATTCTCGCTAGTGTATGG
TGTGGAAGCTGTTTTGCCTATCGAGATCGATCTAAAGGAAGCTAAGTGGACACAGGGGAGGTACGAGGAGTTAAATCTCATAGAAGAGAGAAGGTTGGCTACATTGTACA
GAGGACAACTGTATCAACGAAAATGA
Protein sequenceShow/hide protein sequence
MTITYKDCHEMLPFALHGYRTSVRTSTEATPFSLVYGVEAVLPIEIDLKEAKWTQGRYEELNLIEERRLATLYRGQLYQRK