CuGenDBv2

Gene ID	IVF0021627
Organism	Cucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Cytochrome c biogenesis B
Genome location	chr10:23157139..23157760
RNA-Seq Expression	IVF0021627
Synteny	IVF0021627
Gene Ontology terms	GO:0015886 - heme transport (biological process) GO:0017004 - cytochrome complex assembly (biological process) GO:0005739 - mitochondrion (cellular component) GO:0043190 - ATP-binding cassette (ABC) transporter complex (cellular component) GO:0015232 - heme transporter activity (molecular function)
InterPro domains	IPR003544 - Cytochrome c-type biogenesis protein CcmB

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

AEN56106.1 cytochrome c biogenesis B [Cucumis melo subsp. melo]

4.49e-111

81.34

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Query:  MRRLFLSLYHKWIFPSTPITSFSPFLSYIIVMPLMLGFEKDFSCHSHLGPIRIPPLFSFPPATFPQNEKEDGTLELYYLTAYCLPKILLLQLVGHRVIQI
        MRRLFLSLYHK IFPSTPITSFSPFLSYI+V PLMLGFEKDFSCHSHLGPIRIPPLF FPPA FP+NEKEDGTLELYYL+AYCLPKILLLQLVGHRVIQI
Subjt:  MRRLFLSLYHKWIFPSTPITSFSPFLSYIIVMPLMLGFEKDFSCHSHLGPIRIPPLFSFPPATFPQNEKEDGTLELYYLTAYCLPKILLLQLVGHRVIQI

Query:  SCLFCGFPMFKLSYQFGRSGMDRLNILLGSLVLTLLYGIHSPRKI----------------QPLHLLHCPLTFSRTSIETEWFHVPSSIGYSSPFVSLFL
        SCLFCGFPMFKL YQFGRSGMDRLNILLGSLVLTLL GIHS   +                 P  L   P T SRTSIETEWFHVPSSIGYSSPFVSLF 
Subjt:  SCLFCGFPMFKLSYQFGRSGMDRLNILLGSLVLTLLYGIHSPRKI----------------QPLHLLHCPLTFSRTSIETEWFHVPSSIGYSSPFVSLFL

Query:  ILVSLSLQD
        I VSLSLQD
Subjt:  ILVSLSLQD

PRQ15603.1 putative cytochrome c-type biogenesis protein CcmB [Rosa chinensis]

2.75e-105

78.64

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Query:  MRRLFLSLYHKWIFPSTPITSFSPFLSYIIVMPLMLGFEKDFSCHSHLGPIRIPPLFSFPPATFPQNEKEDGTLELYYLTAYCLPKILLLQLVGHRVIQI
        MRRLFL LYHK IFPSTPITSFSPFLSYI+V PLMLGFEKDFSCHSHLGPIRIPPLF FPPA F +NEKEDGTLELYYL+AYCLPKILLLQLVGHRVIQI
Subjt:  MRRLFLSLYHKWIFPSTPITSFSPFLSYIIVMPLMLGFEKDFSCHSHLGPIRIPPLFSFPPATFPQNEKEDGTLELYYLTAYCLPKILLLQLVGHRVIQI

Query:  SCLFCGFPMFKLSYQFGRSGMDRLNILLGSLVLTLLYGIHSPRKI------------QPLHL-LHCPLTFSRTSIETEWFHVPSSIGYSSPFVSLFLILV
        SC+FCGFPM +L YQF +SGMDRLNILLGSLVLTLL GIHS   +             P  L    P T SRTSIETEWFHVPSSIGYSSPFVSLF I V
Subjt:  SCLFCGFPMFKLSYQFGRSGMDRLNILLGSLVLTLLYGIHSPRKI------------QPLHL-LHCPLTFSRTSIETEWFHVPSSIGYSSPFVSLFLILV

Query:  SLSLQD
        S+SLQD
Subjt:  SLSLQD

QXE45588.1 cytochrome c biogenesis B [Prosopis glandulosa]

6.79e-106

77.99

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Query:  MRRLFLSLYHKWIFPSTPITSFSPFLSYIIVMPLMLGFEKDFSCHSHLGPIRIPPLFSFPPATFPQNEKEDGTLELYYLTAYCLPKILLLQLVGHRVIQI
        MRRLFL LYHK IFPSTPITSFSPFLSYI+V PL+LGFEKDFSCHSHLGPIRIPPLF FPPA FP+NEKEDGTLELYYL+AYCLPKILLLQLVGHRVIQI
Subjt:  MRRLFLSLYHKWIFPSTPITSFSPFLSYIIVMPLMLGFEKDFSCHSHLGPIRIPPLFSFPPATFPQNEKEDGTLELYYLTAYCLPKILLLQLVGHRVIQI

Query:  SCLFCGFPMFKLSYQFGRSGMDRLNILLGSLVLTLLYGIHSPRKI----------------QPLHLLHCPLTFSRTSIETEWFHVPSSIGYSSPFVSLFL
        SC+FCGFPM +L YQFGRSGMDRLNILLGSLVLTLL GIHS   +                 P  L   P T SRTSIETEWFHV SSIGYSSPFVSLF 
Subjt:  SCLFCGFPMFKLSYQFGRSGMDRLNILLGSLVLTLLYGIHSPRKI----------------QPLHLLHCPLTFSRTSIETEWFHVPSSIGYSSPFVSLFL

Query:  ILVSLSLQD
        I VS+SLQD
Subjt:  ILVSLSLQD

YP_004849329.1 cytochrome c biogenesis B [Cucumis sativus]

7.11e-108

79.43

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Query:  MRRLFLSLYHKWIFPSTPITSFSPFLSYIIVMPLMLGFEKDFSCHSHLGPIRIPPLFSFPPATFPQNEKEDGTLELYYLTAYCLPKILLLQLVGHRVIQI
        MRRLFL LYHK IFPSTPITSFSPFLSYI+V PLMLGFEKDFSCHSHLGPIRIPPLF FPPA FP+NEKEDGTLELYYL+AYCLPKILLLQL+GH VIQI
Subjt:  MRRLFLSLYHKWIFPSTPITSFSPFLSYIIVMPLMLGFEKDFSCHSHLGPIRIPPLFSFPPATFPQNEKEDGTLELYYLTAYCLPKILLLQLVGHRVIQI

Query:  SCLFCGFPMFKLSYQFGRSGMDRLNILLGSLVLTLLYGIHSPRKI----------------QPLHLLHCPLTFSRTSIETEWFHVPSSIGYSSPFVSLFL
        SCLFCGFPM KL YQFGRSGMDRLNILLGSLVLTLL GIHS   +                 P  L   P T SRTSIETEWFHVPSSIGYSSPFVSLF 
Subjt:  SCLFCGFPMFKLSYQFGRSGMDRLNILLGSLVLTLLYGIHSPRKI----------------QPLHLLHCPLTFSRTSIETEWFHVPSSIGYSSPFVSLFL

Query:  ILVSLSLQD
        I VSLSLQD
Subjt:  ILVSLSLQD

YP_009913630.1 cytochrome c biogenesis B [Luffa acutangula]

3.03e-109

79.9

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Query:  MRRLFLSLYHKWIFPSTPITSFSPFLSYIIVMPLMLGFEKDFSCHSHLGPIRIPPLFSFPPATFPQNEKEDGTLELYYLTAYCLPKILLLQLVGHRVIQI
        MRRLFLSLYHK IFPSTPITSFSPFLSYI+V PLMLGFEKDFSCHSHLGPIRIPPLF FPPA FP+NEKEDGTLELYYL+AYCLPKILLLQLVGHRVIQI
Subjt:  MRRLFLSLYHKWIFPSTPITSFSPFLSYIIVMPLMLGFEKDFSCHSHLGPIRIPPLFSFPPATFPQNEKEDGTLELYYLTAYCLPKILLLQLVGHRVIQI

Query:  SCLFCGFPMFKLSYQFGRSGMDRLNILLGSLVLTLLYGIHSPRKI----------------QPLHLLHCPLTFSRTSIETEWFHVPSSIGYSSPFVSLFL
        SC+FCGFPM KL YQFGRSGMDRLNILLGSLVLTLL GIHS   +                 P  L   P T SRTSIETEWFHVPSSIGYSSPFVSLF 
Subjt:  SCLFCGFPMFKLSYQFGRSGMDRLNILLGSLVLTLLYGIHSPRKI----------------QPLHLLHCPLTFSRTSIETEWFHVPSSIGYSSPFVSLFL

Query:  ILVSLSLQD
        I VS+SLQD
Subjt:  ILVSLSLQD

TrEMBL top hits

e value

%identity

Alignment

A0A2P6P101 Putative cytochrome c-type biogenesis protein CcmB

1.3e-81

78.64

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Query:  MRRLFLSLYHKWIFPSTPITSFSPFLSYIIVMPLMLGFEKDFSCHSHLGPIRIPPLFSFPPATFPQNEKEDGTLELYYLTAYCLPKILLLQLVGHRVIQI
        MRRLFL LYHK IFPSTPITSFSPFLSYI+V PLMLGFEKDFSCHSHLGPIRIPPLF FPPA F +NEKEDGTLELYYL+AYCLPKILLLQLVGHRVIQI
Subjt:  MRRLFLSLYHKWIFPSTPITSFSPFLSYIIVMPLMLGFEKDFSCHSHLGPIRIPPLFSFPPATFPQNEKEDGTLELYYLTAYCLPKILLLQLVGHRVIQI

Query:  SCLFCGFPMFKLSYQFGRSGMDRLNILLGSLVLTLLYGIHSPRKI------------QPLHL-LHCPLTFSRTSIETEWFHVPSSIGYSSPFVSLFLILV
        SC+FCGFPM +L YQF +SGMDRLNILLGSLVLTLL GIHS   +             P  L    P T SRTSIETEWFHVPSSIGYSSPFVSLF I V
Subjt:  SCLFCGFPMFKLSYQFGRSGMDRLNILLGSLVLTLLYGIHSPRKI------------QPLHL-LHCPLTFSRTSIETEWFHVPSSIGYSSPFVSLFLILV

Query:  SLSLQD
        S+SLQD
Subjt:  SLSLQD

A0A3Q9CS08 Cytochrome c biogenesis B

6.8e-86

81.34

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Query:  MRRLFLSLYHKWIFPSTPITSFSPFLSYIIVMPLMLGFEKDFSCHSHLGPIRIPPLFSFPPATFPQNEKEDGTLELYYLTAYCLPKILLLQLVGHRVIQI
        MRRLFLSLYHK IFPSTPITSFSPFLSYI+V PLMLGFEKDFSCHSHLGPIRIPPLF FPPA FP+NEKEDGTLELYYL+AYCLPKILLLQLVGHRVIQI
Subjt:  MRRLFLSLYHKWIFPSTPITSFSPFLSYIIVMPLMLGFEKDFSCHSHLGPIRIPPLFSFPPATFPQNEKEDGTLELYYLTAYCLPKILLLQLVGHRVIQI

Query:  SCLFCGFPMFKLSYQFGRSGMDRLNILLGSLVLTLLYGIHSPRKI----------------QPLHLLHCPLTFSRTSIETEWFHVPSSIGYSSPFVSLFL
        SCLFCGFPMFKL YQFGRSGMDRLNILLGSLVLTLL GIHS   +                 P  L   P T SRTSIETEWFHVPSSIGYSSPFVSLF 
Subjt:  SCLFCGFPMFKLSYQFGRSGMDRLNILLGSLVLTLLYGIHSPRKI----------------QPLHLLHCPLTFSRTSIETEWFHVPSSIGYSSPFVSLFL

Query:  ILVSLSLQD
        I VSLSLQD
Subjt:  ILVSLSLQD

A0A7D6C7C3 Cytochrome c biogenesis B

1.7e-84

79.9

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Query:  MRRLFLSLYHKWIFPSTPITSFSPFLSYIIVMPLMLGFEKDFSCHSHLGPIRIPPLFSFPPATFPQNEKEDGTLELYYLTAYCLPKILLLQLVGHRVIQI
        MRRLFLSLYHK IFPSTPITSFSPFLSYI+V PLMLGFEKDFSCHSHLGPIRIPPLF FPPA FP+NEKEDGTLELYYL+AYCLPKILLLQLVGHRVIQI
Subjt:  MRRLFLSLYHKWIFPSTPITSFSPFLSYIIVMPLMLGFEKDFSCHSHLGPIRIPPLFSFPPATFPQNEKEDGTLELYYLTAYCLPKILLLQLVGHRVIQI

Query:  SCLFCGFPMFKLSYQFGRSGMDRLNILLGSLVLTLLYGIHSPRKI----------------QPLHLLHCPLTFSRTSIETEWFHVPSSIGYSSPFVSLFL
        SC+FCGFPM KL YQFGRSGMDRLNILLGSLVLTLL GIHS   +                 P  L   P T SRTSIETEWFHVPSSIGYSSPFVSLF 
Subjt:  SCLFCGFPMFKLSYQFGRSGMDRLNILLGSLVLTLLYGIHSPRKI----------------QPLHLLHCPLTFSRTSIETEWFHVPSSIGYSSPFVSLFL

Query:  ILVSLSLQD
        I VS+SLQD
Subjt:  ILVSLSLQD

G3EIY1 Cytochrome c biogenesis B

1.9e-83

79.43

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Query:  MRRLFLSLYHKWIFPSTPITSFSPFLSYIIVMPLMLGFEKDFSCHSHLGPIRIPPLFSFPPATFPQNEKEDGTLELYYLTAYCLPKILLLQLVGHRVIQI
        MRRLFL LYHK IFPSTPITSFSPFLSYI+V PLMLGFEKDFSCHSHLGPIRIPPLF FPPA FP+NEKEDGTLELYYL+AYCLPKILLLQL+GH VIQI
Subjt:  MRRLFLSLYHKWIFPSTPITSFSPFLSYIIVMPLMLGFEKDFSCHSHLGPIRIPPLFSFPPATFPQNEKEDGTLELYYLTAYCLPKILLLQLVGHRVIQI

Query:  SCLFCGFPMFKLSYQFGRSGMDRLNILLGSLVLTLLYGIHSPRKI----------------QPLHLLHCPLTFSRTSIETEWFHVPSSIGYSSPFVSLFL
        SCLFCGFPM KL YQFGRSGMDRLNILLGSLVLTLL GIHS   +                 P  L   P T SRTSIETEWFHVPSSIGYSSPFVSLF 
Subjt:  SCLFCGFPMFKLSYQFGRSGMDRLNILLGSLVLTLLYGIHSPRKI----------------QPLHLLHCPLTFSRTSIETEWFHVPSSIGYSSPFVSLFL

Query:  ILVSLSLQD
        I VSLSLQD
Subjt:  ILVSLSLQD

G3EU22 Cytochrome c biogenesis B

6.8e-86

81.34

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Query:  MRRLFLSLYHKWIFPSTPITSFSPFLSYIIVMPLMLGFEKDFSCHSHLGPIRIPPLFSFPPATFPQNEKEDGTLELYYLTAYCLPKILLLQLVGHRVIQI
        MRRLFLSLYHK IFPSTPITSFSPFLSYI+V PLMLGFEKDFSCHSHLGPIRIPPLF FPPA FP+NEKEDGTLELYYL+AYCLPKILLLQLVGHRVIQI
Subjt:  MRRLFLSLYHKWIFPSTPITSFSPFLSYIIVMPLMLGFEKDFSCHSHLGPIRIPPLFSFPPATFPQNEKEDGTLELYYLTAYCLPKILLLQLVGHRVIQI

Query:  SCLFCGFPMFKLSYQFGRSGMDRLNILLGSLVLTLLYGIHSPRKI----------------QPLHLLHCPLTFSRTSIETEWFHVPSSIGYSSPFVSLFL
        SCLFCGFPMFKL YQFGRSGMDRLNILLGSLVLTLL GIHS   +                 P  L   P T SRTSIETEWFHVPSSIGYSSPFVSLF 
Subjt:  SCLFCGFPMFKLSYQFGRSGMDRLNILLGSLVLTLLYGIHSPRKI----------------QPLHLLHCPLTFSRTSIETEWFHVPSSIGYSSPFVSLFL

Query:  ILVSLSLQD
        I VSLSLQD
Subjt:  ILVSLSLQD

SwissProt top hits

e value

%identity

Alignment

P38454 Putative cytochrome c biogenesis ccmB-like mitochondrial protein

1.4e-43

51.47

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Query:  RLFLSLYHKWIF--PSTPITSFSPFLSYIIVMPLMLGFEKDFSCHSHLGPIRIPPLFSFPPATFPQNEKEDGTLELYYLTAYCLPKILLLQLVGHRVIQI
        ++FL L+++ I    ST IT+FS FL YI+V PLM+GF KDF CH HLG I I  LFSF P  F QN+ EDGTLELYYL+ YCL KILL +L GH V+QI
Subjt:  RLFLSLYHKWIF--PSTPITSFSPFLSYIIVMPLMLGFEKDFSCHSHLGPIRIPPLFSFPPATFPQNEKEDGTLELYYLTAYCLPKILLLQLVGHRVIQI

Query:  SCLFCGFPMFKLSYQFGRSGMDRLNILLGSLVLTLLYGIHSP----------RKIQPLHLLH--CPLTFSRTSIETEWFHVPSSIGYSSPFVSLFLILVS
        S +FC FP+ +L YQF +S M+   I++GS + TL+ GIHS             +Q L  L    PL    TSIETEWFHV   +GY   F+  + ILVS
Subjt:  SCLFCGFPMFKLSYQFGRSGMDRLNILLGSLVLTLLYGIHSP----------RKIQPLHLLH--CPLTFSRTSIETEWFHVPSSIGYSSPFVSLFLILVS

Query:  LSLQ
        ++LQ
Subjt:  LSLQ

P93280 Putative cytochrome c biogenesis ccmB-like mitochondrial protein

9.9e-66

68.6

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Query:  MRRLFLSLYHKWIFPSTPITSFSPFLSYIIVMPLMLGFEKDFSCHSHLGPIRIPPLFSFPPATFPQNEKEDGTLELYYLTAYCLPKILLLQLVGHRVIQI
        MRRLF  LY+K IF STPITSFS FL YI+V PLMLGFEKDF CH HLG I I  LFSF  A F +NEKEDGTLELYYL+ YCLPKILLLQLVGH VIQI
Subjt:  MRRLFLSLYHKWIFPSTPITSFSPFLSYIIVMPLMLGFEKDFSCHSHLGPIRIPPLFSFPPATFPQNEKEDGTLELYYLTAYCLPKILLLQLVGHRVIQI

Query:  SCLFCGFPMFKLSYQFGRSGMDRLNILLGSLVLTLLYGIH--------------SPRKIQPLHLLHCPLTFSRTSIETEWFHVPSSIGYSSPFVSLFLIL
        SC+FCGFPM +L YQFGRSGMD LNILLGSLVLTLL GIH              S + +  L  L  PLT   TSIETEWFHV   IGY   FVSLF I 
Subjt:  SCLFCGFPMFKLSYQFGRSGMDRLNILLGSLVLTLLYGIH--------------SPRKIQPLHLLHCPLTFSRTSIETEWFHVPSSIGYSSPFVSLFLIL

Query:  VSLSLQD
        VS+SLQD
Subjt:  VSLSLQD

Arabidopsis top hits

e value

%identity

Alignment

ATMG00110.1 cytochrome C biogenesis 206

1.0e-81

76.56

Show/hide

Query:  MRRLFLSLYHKWIFPSTPITSFSPFLSYIIVMPLMLGFEKDFSCHSHLGPIRIPPLFSFPPATFPQNEKEDGTLELYYLTAYCLPKILLLQLVGHRVIQI
        MRRLFL LYHK IF STPITSFS FLSYI+V PLMLGFEKDFSCHSHLGPIRIPPLF FPPA FP+NEKEDGTLELYYL+ YCLPKILLLQLVGHRVIQI
Subjt:  MRRLFLSLYHKWIFPSTPITSFSPFLSYIIVMPLMLGFEKDFSCHSHLGPIRIPPLFSFPPATFPQNEKEDGTLELYYLTAYCLPKILLLQLVGHRVIQI

Query:  SCLFCGFPMFKLSYQFGRSGMDRLNILLGSLVLTLLYGIHSPRKI----------------QPLHLLHCPLTFSRTSIETEWFHVPSSIGYSSPFVSLFL
        S +FCGFPM +LSYQFGRSGMDRLNI LGSLVLTLL GIHS   +                 P  L   PLT SRTSIETEWFHV SSIGYSS FVSLF 
Subjt:  SCLFCGFPMFKLSYQFGRSGMDRLNILLGSLVLTLLYGIHSPRKI----------------QPLHLLHCPLTFSRTSIETEWFHVPSSIGYSSPFVSLFL

Query:  ILVSLSLQD
        I VS+SLQD
Subjt:  ILVSLSLQD

Sequences

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CDS sequence

Show/hide CDS sequence

ATGAGACGACTCTTTCTTTCACTATATCATAAATGGATCTTCCCCTCCACACCAATCACGAGTTTTTCTCCATTCCTCTCGTATATCATCGTCATGCCCTTAATGCTAGG
TTTTGAAAAAGACTTTTCATGTCATTCCCATTTAGGTCCGATTCGGATCCCTCCGTTGTTTTCTTTTCCTCCCGCAACTTTTCCTCAAAATGAGAAAGAAGATGGTACAC
TCGAATTGTATTATTTAACTGCTTATTGCTTGCCAAAGATCCTACTTCTACAATTGGTAGGTCACCGGGTTATTCAAATAAGTTGTCTTTTCTGTGGTTTTCCCATGTTC
AAACTTTCGTACCAATTTGGTCGATCCGGAATGGATCGATTAAACATTCTATTAGGGAGCCTGGTCTTGACTCTTCTGTATGGTATTCATTCTCCTCGCAAAATCCAACC
ACTTCACCTACTTCATTGCCCCCTAACCTTTTCTCGTACCTCTATTGAAACAGAATGGTTTCATGTTCCTTCATCGATTGGTTATTCCTCCCCGTTCGTATCTCTTTTTC
TAATTTTGGTCTCTCTGAGTTTACAAGATTGA

mRNA sequence

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Protein sequence

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MRRLFLSLYHKWIFPSTPITSFSPFLSYIIVMPLMLGFEKDFSCHSHLGPIRIPPLFSFPPATFPQNEKEDGTLELYYLTAYCLPKILLLQLVGHRVIQISCLFCGFPMF
KLSYQFGRSGMDRLNILLGSLVLTLLYGIHSPRKIQPLHLLHCPLTFSRTSIETEWFHVPSSIGYSSPFVSLFLILVSLSLQD

IVF0021627 (gene) of Melon (IVF77) v1 genome