CuGenDBv2

Gene ID	IVF0021643
Organism	Cucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	protein RADIALIS-like 1
Genome location	chr01:16638991..16639824
RNA-Seq Expression	IVF0021643
Synteny	IVF0021643
Gene Ontology terms	GO:0006355 - regulation of transcription, DNA-templated (biological process) GO:0003700 - DNA-binding transcription factor activity (molecular function)
InterPro domains	IPR001005 - SANT/Myb domain IPR009057 - Homeobox-like domain superfamily IPR017930 - Myb domain IPR044636 - Transcription factor RADIALIS-like

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0036174.1 protein RADIALIS-like 2 [Cucumis melo var. makuwa]

2.53e-57

100

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Query:  MASMSSHGSNAWTKMQNKTFEKALAEYDQDTPERWVNVAKAVGEKTEEEVKRHYQLLLHDVKHIESGNVPFPYPTTSSDDDLPRKRG
        MASMSSHGSNAWTKMQNKTFEKALAEYDQDTPERWVNVAKAVGEKTEEEVKRHYQLLLHDVKHIESGNVPFPYPTTSSDDDLPRKRG
Subjt:  MASMSSHGSNAWTKMQNKTFEKALAEYDQDTPERWVNVAKAVGEKTEEEVKRHYQLLLHDVKHIESGNVPFPYPTTSSDDDLPRKRG

XP_008447294.1 PREDICTED: protein RADIALIS-like 2 [Cucumis melo]

2.53e-57

100

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Query:  MASMSSHGSNAWTKMQNKTFEKALAEYDQDTPERWVNVAKAVGEKTEEEVKRHYQLLLHDVKHIESGNVPFPYPTTSSDDDLPRKRG
        MASMSSHGSNAWTKMQNKTFEKALAEYDQDTPERWVNVAKAVGEKTEEEVKRHYQLLLHDVKHIESGNVPFPYPTTSSDDDLPRKRG
Subjt:  MASMSSHGSNAWTKMQNKTFEKALAEYDQDTPERWVNVAKAVGEKTEEEVKRHYQLLLHDVKHIESGNVPFPYPTTSSDDDLPRKRG

XP_011659078.1 protein RADIALIS-like 2 [Cucumis sativus]

9.36e-55

96.55

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Query:  MASMSSHGSNAWTKMQNKTFEKALAEYDQDTPERWVNVAKAVGEKTEEEVKRHYQLLLHDVKHIESGNVPFPYPTTSSDDDLPRKRG
        MASMSSHGSNAWTKMQNKTFE ALAEYDQDTPERWVNVAKAVGEKTEEEVK HYQLLLHDVKHIESGNVPFPYPTTSS+DDLPRKRG
Subjt:  MASMSSHGSNAWTKMQNKTFEKALAEYDQDTPERWVNVAKAVGEKTEEEVKRHYQLLLHDVKHIESGNVPFPYPTTSSDDDLPRKRG

XP_022952273.1 protein RADIALIS-like 1 [Cucurbita moschata]

7.59e-47

88.51

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Query:  MASMSSHGSNAWTKMQNKTFEKALAEYDQDTPERWVNVAKAVGEKTEEEVKRHYQLLLHDVKHIESGNVPFPYPTTSSDDDLPRKRG
        MASMSS GSNAWT MQNK FEKALA YDQDTPERW+NVAKAVGEKTEEEVKRHYQLLLHDVKHIESGNVPFPY  +S  DDLPRKRG
Subjt:  MASMSSHGSNAWTKMQNKTFEKALAEYDQDTPERWVNVAKAVGEKTEEEVKRHYQLLLHDVKHIESGNVPFPYPTTSSDDDLPRKRG

XP_038888638.1 protein RADIALIS-like 1 [Benincasa hispida]

3.90e-49

91.95

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Query:  MASMSSHGSNAWTKMQNKTFEKALAEYDQDTPERWVNVAKAVGEKTEEEVKRHYQLLLHDVKHIESGNVPFPYPTTSSDDDLPRKRG
        MASMSSHGSNAWT MQNKTFEKALA YDQDTPERW+NVAKAVGEKTEEEVKRHYQLLL DVKHIESGNVPFPYP  SS DDLPRKRG
Subjt:  MASMSSHGSNAWTKMQNKTFEKALAEYDQDTPERWVNVAKAVGEKTEEEVKRHYQLLLHDVKHIESGNVPFPYPTTSSDDDLPRKRG

TrEMBL top hits

e value

%identity

Alignment

A0A1S3BHZ4 protein RADIALIS-like 2

2.1e-42

100

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Query:  MASMSSHGSNAWTKMQNKTFEKALAEYDQDTPERWVNVAKAVGEKTEEEVKRHYQLLLHDVKHIESGNVPFPYPTTSSDDDLPRKRG
        MASMSSHGSNAWTKMQNKTFEKALAEYDQDTPERWVNVAKAVGEKTEEEVKRHYQLLLHDVKHIESGNVPFPYPTTSSDDDLPRKRG
Subjt:  MASMSSHGSNAWTKMQNKTFEKALAEYDQDTPERWVNVAKAVGEKTEEEVKRHYQLLLHDVKHIESGNVPFPYPTTSSDDDLPRKRG

A0A5D3D8F6 Protein RADIALIS-like 2

2.1e-42

100

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Query:  MASMSSHGSNAWTKMQNKTFEKALAEYDQDTPERWVNVAKAVGEKTEEEVKRHYQLLLHDVKHIESGNVPFPYPTTSSDDDLPRKRG
        MASMSSHGSNAWTKMQNKTFEKALAEYDQDTPERWVNVAKAVGEKTEEEVKRHYQLLLHDVKHIESGNVPFPYPTTSSDDDLPRKRG
Subjt:  MASMSSHGSNAWTKMQNKTFEKALAEYDQDTPERWVNVAKAVGEKTEEEVKRHYQLLLHDVKHIESGNVPFPYPTTSSDDDLPRKRG

A0A6J1C6U4 protein RADIALIS-like 1

9.7e-32

82.76

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Query:  MASMSSHGSNAWTKMQNKTFEKALAEYDQDTPERWVNVAKAVGEKTEEEVKRHYQLLLHDVKHIESGNVPFPYPTTSSDDDLPRKRG
        MASMSS GS+AWT MQNK FE+ALA YDQDTPERW+NVAKAVGEKTEEEVKRHYQLL+ DVKHIESG+VPFPY  TS+DDD P KRG
Subjt:  MASMSSHGSNAWTKMQNKTFEKALAEYDQDTPERWVNVAKAVGEKTEEEVKRHYQLLLHDVKHIESGNVPFPYPTTSSDDDLPRKRG

A0A6J1GK35 protein RADIALIS-like 1

2.1e-34

88.51

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Query:  MASMSSHGSNAWTKMQNKTFEKALAEYDQDTPERWVNVAKAVGEKTEEEVKRHYQLLLHDVKHIESGNVPFPYPTTSSDDDLPRKRG
        MASMSS GSNAWT MQNK FEKALA YDQDTPERW+NVAKAVGEKTEEEVKRHYQLLLHDVKHIESGNVPFPY   +S DDLPRKRG
Subjt:  MASMSSHGSNAWTKMQNKTFEKALAEYDQDTPERWVNVAKAVGEKTEEEVKRHYQLLLHDVKHIESGNVPFPYPTTSSDDDLPRKRG

A0A6J1I517 protein RADIALIS-like 1

6.1e-34

87.36

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Query:  MASMSSHGSNAWTKMQNKTFEKALAEYDQDTPERWVNVAKAVGEKTEEEVKRHYQLLLHDVKHIESGNVPFPYPTTSSDDDLPRKRG
        MASMSS GSNAWT MQNK FEKALA YDQDTPERW+NVAK VGEKTEEEVKRHYQLLLHDVKHIESGNVPFPY   +S DDLPRKRG
Subjt:  MASMSSHGSNAWTKMQNKTFEKALAEYDQDTPERWVNVAKAVGEKTEEEVKRHYQLLLHDVKHIESGNVPFPYPTTSSDDDLPRKRG

SwissProt top hits

e value

%identity

Alignment

F4JVB8 Protein RADIALIS-like 1

1.2e-21

65.79

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Query:  ASMSSHGSNAWTKMQNKTFEKALAEYDQDTPERWVNVAKAVGEKTEEEVKRHYQLLLHDVKHIESGNVPFPYPTTS
        +SMSS  S +WT  QNK FE+ALA YDQDTP RW NVAK VG KT EEVKRHY+LL+ D+  IE+G+VPFP   TS
Subjt:  ASMSSHGSNAWTKMQNKTFEKALAEYDQDTPERWVNVAKAVGEKTEEEVKRHYQLLLHDVKHIESGNVPFPYPTTS

Q58FS3 Transcription factor RADIALIS

1.6e-18

54.02

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Query:  MASMSSHGSNAWTKMQNKTFEKALAEYDQDTPERWVNVAKAVGEKTEEEVKRHYQLLLHDVKHIESGNVPFP-YPTTSSDDDLPRKR
        MAS    G   W+  +NK FE+ALA YD+DTP+RW NVA+AV  +T EEVK+HY++L+ D+K+IESG VPFP Y TT  +     KR
Subjt:  MASMSSHGSNAWTKMQNKTFEKALAEYDQDTPERWVNVAKAVGEKTEEEVKRHYQLLLHDVKHIESGNVPFP-YPTTSSDDDLPRKR

Q6NNN0 Protein RADIALIS-like 3

7.0e-19

62.5

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Query:  MASMSSHGSNAWTKMQNKTFEKALAEYDQDTPERWVNVAKAVGEKTEEEVKRHYQLLLHDVKHIESGNVPFP
        MAS S   S +WT+ +NK FE+ALA YDQDTP+RW NVA+AVG K+ EEV+RHY+LL+ DV  IESG  P P
Subjt:  MASMSSHGSNAWTKMQNKTFEKALAEYDQDTPERWVNVAKAVGEKTEEEVKRHYQLLLHDVKHIESGNVPFP

Q8GW75 Protein RADIALIS-like 5

3.5e-18

61.11

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Query:  MASMSSHGSNAWTKMQNKTFEKALAEYDQDTPERWVNVAKAVGEKTEEEVKRHYQLLLHDVKHIESGNVPFP
        MAS S   S++WT  QNK FE+ALA YD+DTP+RW NVAKAVG K+ EEVKRHY +L+ D+ +IE   VP P
Subjt:  MASMSSHGSNAWTKMQNKTFEKALAEYDQDTPERWVNVAKAVGEKTEEEVKRHYQLLLHDVKHIESGNVPFP

Q9SIJ5 Protein RADIALIS-like 2

6.7e-22

61.18

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Query:  SMSSHGSNAWTKMQNKTFEKALAEYDQDTPERWVNVAKAVGEKTEEEVKRHYQLLLHDVKHIESGNVPFP-YPTTSSDDDLPRKR
        SMSS+GS +WT  QNK FE+ALA YDQDTP+RW NVA+AVG KT EE KR Y LL+ D++ IE+G+VPFP Y TT+ + +  R R
Subjt:  SMSSHGSNAWTKMQNKTFEKALAEYDQDTPERWVNVAKAVGEKTEEEVKRHYQLLLHDVKHIESGNVPFP-YPTTSSDDDLPRKR

Arabidopsis top hits

e value

%identity

Alignment

AT1G19510.1 RAD-like 5

2.5e-19

61.11

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Query:  MASMSSHGSNAWTKMQNKTFEKALAEYDQDTPERWVNVAKAVGEKTEEEVKRHYQLLLHDVKHIESGNVPFP
        MAS S   S++WT  QNK FE+ALA YD+DTP+RW NVAKAVG K+ EEVKRHY +L+ D+ +IE   VP P
Subjt:  MASMSSHGSNAWTKMQNKTFEKALAEYDQDTPERWVNVAKAVGEKTEEEVKRHYQLLLHDVKHIESGNVPFP

AT1G75250.1 RAD-like 6

3.2e-19

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Query:  MASMSSHGSNAWTKMQNKTFEKALAEYDQDTPERWVNVAKAVGEKTEEEVKRHYQLLLHDVKHIESGNVPFP-YPTTSSD
        MAS S    + WT  QNK FE+ALA YD+DTP+RW NVAKAVG KT EEVKRHY +L+ D+ +IE+G VP P Y T  S+
Subjt:  MASMSSHGSNAWTKMQNKTFEKALAEYDQDTPERWVNVAKAVGEKTEEEVKRHYQLLLHDVKHIESGNVPFP-YPTTSSD

AT1G75250.2 RAD-like 6

3.2e-19

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Query:  MASMSSHGSNAWTKMQNKTFEKALAEYDQDTPERWVNVAKAVGEKTEEEVKRHYQLLLHDVKHIESGNVPFP-YPTTSSD
        MAS S    + WT  QNK FE+ALA YD+DTP+RW NVAKAVG KT EEVKRHY +L+ D+ +IE+G VP P Y T  S+
Subjt:  MASMSSHGSNAWTKMQNKTFEKALAEYDQDTPERWVNVAKAVGEKTEEEVKRHYQLLLHDVKHIESGNVPFP-YPTTSSD

AT2G21650.1 Homeodomain-like superfamily protein

4.8e-23

61.18

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Query:  SMSSHGSNAWTKMQNKTFEKALAEYDQDTPERWVNVAKAVGEKTEEEVKRHYQLLLHDVKHIESGNVPFP-YPTTSSDDDLPRKR
        SMSS+GS +WT  QNK FE+ALA YDQDTP+RW NVA+AVG KT EE KR Y LL+ D++ IE+G+VPFP Y TT+ + +  R R
Subjt:  SMSSHGSNAWTKMQNKTFEKALAEYDQDTPERWVNVAKAVGEKTEEEVKRHYQLLLHDVKHIESGNVPFP-YPTTSSDDDLPRKR

AT4G39250.1 RAD-like 1

8.2e-23

65.79

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Query:  ASMSSHGSNAWTKMQNKTFEKALAEYDQDTPERWVNVAKAVGEKTEEEVKRHYQLLLHDVKHIESGNVPFPYPTTS
        +SMSS  S +WT  QNK FE+ALA YDQDTP RW NVAK VG KT EEVKRHY+LL+ D+  IE+G+VPFP   TS
Subjt:  ASMSSHGSNAWTKMQNKTFEKALAEYDQDTPERWVNVAKAVGEKTEEEVKRHYQLLLHDVKHIESGNVPFPYPTTS

Sequences

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CDS sequence

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ATGGCTTCAATGTCCTCACATGGCTCAAATGCATGGACTAAAATGCAAAACAAGACGTTTGAAAAGGCTTTGGCTGAGTATGATCAAGACACTCCTGAAAGATGGGTGAA
TGTTGCTAAGGCTGTTGGTGAAAAAACTGAAGAGGAAGTCAAGAGGCATTACCAACTTCTCCTTCATGATGTCAAACATATCGAGTCTGGCAATGTCCCTTTTCCCTATC
CAACAACCTCGAGCGATGATGATTTGCCGAGGAAAAGAGGATGA

mRNA sequence

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TCCATTTTTGGTCCTCTTTTCAAAACCCATTTGTTTTGTTTTGGCAATTAAAAGCTCAATATTACCAAAAGTAATGGCTTCAATGTCCTCACATGGCTCAAATGCATGGA
CTAAAATGCAAAACAAGACGTTTGAAAAGGCTTTGGCTGAGTATGATCAAGACACTCCTGAAAGATGGGTGAATGTTGCTAAGGCTGTTGGTGAAAAAACTGAAGAGGAA
GTCAAGAGGCATTACCAACTTCTCCTTCATGATGTCAAACATATCGAGTCTGGCAATGTCCCTTTTCCCTATCCAACAACCTCGAGCGATGATGATTTGCCGAGGAAAAG
AGGATGAGTAAGAACAAGGCCTTCATTGATCGAGCTAGTGCAATACTTTGAAGAATATAAAAGAAGAACGAACCATCCCTTTAAATGCAGTTTTACTAATGATGAAAGAA
TAAATAAGAGTTTAATTATTTGAAATTTTGTTCCTCTCTGAGAGTATGAGAGTTCTTGTTATAT

Protein sequence

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MASMSSHGSNAWTKMQNKTFEKALAEYDQDTPERWVNVAKAVGEKTEEEVKRHYQLLLHDVKHIESGNVPFPYPTTSSDDDLPRKRG

IVF0021643 (gene) of Melon (IVF77) v1 genome