; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

IVF0021685 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0021685
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description50S ribosomal protein L16, chloroplastic
Genome locationtig00000662:71590..71949
RNA-Seq ExpressionIVF0021685
SyntenyIVF0021685
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0005840 - ribosome (cellular component)
GO:0009507 - chloroplast (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
GO:0019843 - rRNA binding (molecular function)
InterPro domainsIPR000114 - Ribosomal protein L16
IPR016180 - Ribosomal protein L10e/L16
IPR020798 - Ribosomal protein L16, conserved site
IPR036920 - Ribosomal protein L10e/L16 superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
ABI97454.1 ribosomal protein L16, partial [Cucumis sativus]4.39e-80100Show/hide
Query:  MKGISYRGNSICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEMSGVAENIARK
        MKGISYRGNSICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEMSGVAENIARK
Subjt:  MKGISYRGNSICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEMSGVAENIARK

Query:  AISIAASKMPIRTQFITSG
        AISIAASKMPIRTQFITSG
Subjt:  AISIAASKMPIRTQFITSG

ASY96370.1 ribosomal protein L16 [Cucumis melo subsp. agrestis]2.76e-80100Show/hide
Query:  MKGISYRGNSICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEMSGVAENIARK
        MKGISYRGNSICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEMSGVAENIARK
Subjt:  MKGISYRGNSICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEMSGVAENIARK

Query:  AISIAASKMPIRTQFITSG
        AISIAASKMPIRTQFITSG
Subjt:  AISIAASKMPIRTQFITSG

BAH95844.1 ribosomal protein L16, partial [Asparagus officinalis]1.55e-79100Show/hide
Query:  KGISYRGNSICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEMSGVAENIARKA
        KGISYRGNSICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEMSGVAENIARKA
Subjt:  KGISYRGNSICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEMSGVAENIARKA

Query:  ISIAASKMPIRTQFITSG
        ISIAASKMPIRTQFITSG
Subjt:  ISIAASKMPIRTQFITSG

QHB76001.1 ribosomal protein L16 [Cucumis melo subsp. melo]1.12e-7999.16Show/hide
Query:  MKGISYRGNSICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEMSGVAENIARK
        MKGISYRGNSICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYE+SGVAENIARK
Subjt:  MKGISYRGNSICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEMSGVAENIARK

Query:  AISIAASKMPIRTQFITSG
        AISIAASKMPIRTQFITSG
Subjt:  AISIAASKMPIRTQFITSG

YP_004841821.1 ribosomal protein L16 [Cucumis melo subsp. melo]4.69e-80100Show/hide
Query:  MKGISYRGNSICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEMSGVAENIARK
        MKGISYRGNSICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEMSGVAENIARK
Subjt:  MKGISYRGNSICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEMSGVAENIARK

Query:  AISIAASKMPIRTQFITSG
        AISIAASKMPIRTQFITSG
Subjt:  AISIAASKMPIRTQFITSG

TrEMBL top hitse value%identityAlignment
A0A1S4EU42 50S ribosomal protein L16, chloroplastic3.6e-61100Show/hide
Query:  MKGISYRGNSICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEMSGVAENIARK
        MKGISYRGNSICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEMSGVAENIARK
Subjt:  MKGISYRGNSICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEMSGVAENIARK

Query:  AISIAASKMPIRTQFITSG
        AISIAASKMPIRTQFITSG
Subjt:  AISIAASKMPIRTQFITSG

A0A1X9Q1F7 50S ribosomal protein L16, chloroplastic (Fragment)3.6e-61100Show/hide
Query:  MKGISYRGNSICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEMSGVAENIARK
        MKGISYRGNSICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEMSGVAENIARK
Subjt:  MKGISYRGNSICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEMSGVAENIARK

Query:  AISIAASKMPIRTQFITSG
        AISIAASKMPIRTQFITSG
Subjt:  AISIAASKMPIRTQFITSG

A0A218KG73 50S ribosomal protein L16, chloroplastic3.6e-61100Show/hide
Query:  MKGISYRGNSICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEMSGVAENIARK
        MKGISYRGNSICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEMSGVAENIARK
Subjt:  MKGISYRGNSICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEMSGVAENIARK

Query:  AISIAASKMPIRTQFITSG
        AISIAASKMPIRTQFITSG
Subjt:  AISIAASKMPIRTQFITSG

A0A249RY39 50S ribosomal protein L16, chloroplastic3.6e-61100Show/hide
Query:  MKGISYRGNSICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEMSGVAENIARK
        MKGISYRGNSICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEMSGVAENIARK
Subjt:  MKGISYRGNSICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEMSGVAENIARK

Query:  AISIAASKMPIRTQFITSG
        AISIAASKMPIRTQFITSG
Subjt:  AISIAASKMPIRTQFITSG

A0A249S030 50S ribosomal protein L16, chloroplastic3.6e-61100Show/hide
Query:  MKGISYRGNSICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEMSGVAENIARK
        MKGISYRGNSICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEMSGVAENIARK
Subjt:  MKGISYRGNSICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEMSGVAENIARK

Query:  AISIAASKMPIRTQFITSG
        AISIAASKMPIRTQFITSG
Subjt:  AISIAASKMPIRTQFITSG

SwissProt top hitse value%identityAlignment
B1NWI7 50S ribosomal protein L16, chloroplastic5.9e-6194.96Show/hide
Query:  MKGISYRGNSICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEMSGVAENIARK
        MKGI++RGN ICFGRYA+QALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEM GVAENIARK
Subjt:  MKGISYRGNSICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEMSGVAENIARK

Query:  AISIAASKMPIRTQFITSG
        AISIAASKMPIRTQFI SG
Subjt:  AISIAASKMPIRTQFITSG

Q09ME0 50S ribosomal protein L16, chloroplastic9.1e-6296.64Show/hide
Query:  MKGISYRGNSICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEMSGVAENIARK
        MKGISYRGN ICFGRYA+QALEPAWITSRQIEAGRRAMTRN RRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEMSGVAENIARK
Subjt:  MKGISYRGNSICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEMSGVAENIARK

Query:  AISIAASKMPIRTQFITSG
        AISIAASKMPIRTQFI SG
Subjt:  AISIAASKMPIRTQFITSG

Q0ZIY1 50S ribosomal protein L16, chloroplastic5.9e-6194.96Show/hide
Query:  MKGISYRGNSICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEMSGVAENIARK
        MKGISYRGN ICFGRYA+QALEPAWITSRQIEAGRRAMTRN RRGGKIWVRIFPDKPVT+RPTETRMGSGKGSPEYWVAVVKPGRILYEM GVAENIARK
Subjt:  MKGISYRGNSICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEMSGVAENIARK

Query:  AISIAASKMPIRTQFITSG
        AISIAASKMPIRTQFI SG
Subjt:  AISIAASKMPIRTQFITSG

Q2L940 50S ribosomal protein L16, chloroplastic4.5e-6194.96Show/hide
Query:  MKGISYRGNSICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEMSGVAENIARK
        MKGISYRGN ICFGRYA+QALEPAWITSRQIEAGRRAMTRN RRGGKIWVRIFPDKPVT+RPTETRMGSGKGSPEYWVAVVKPGRILYEMSGVAENIARK
Subjt:  MKGISYRGNSICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEMSGVAENIARK

Query:  AISIAASKMPIRTQFITSG
        AISIAASKMPI+TQFI SG
Subjt:  AISIAASKMPIRTQFITSG

Q4VZN1 50S ribosomal protein L16, chloroplastic9.7e-64100Show/hide
Query:  MKGISYRGNSICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEMSGVAENIARK
        MKGISYRGNSICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEMSGVAENIARK
Subjt:  MKGISYRGNSICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEMSGVAENIARK

Query:  AISIAASKMPIRTQFITSG
        AISIAASKMPIRTQFITSG
Subjt:  AISIAASKMPIRTQFITSG

Arabidopsis top hitse value%identityAlignment
AT2G28830.1 PLANT U-BOX 127.0e-4170.09Show/hide
Query:  KGISYRGNSICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEMSGVAENIARKA
        KG+S +G  IC  RYA+Q LEPAWITSRQIEAGRRAMTRN  RG  + V IF DKPVT+RP ETRMG GKG+P +WVAVVKPG+I+YEM GV+E +AR+A
Subjt:  KGISYRGNSICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEMSGVAENIARKA

Query:  ISIAASKMPIRTQFITS
        ISIAASK+P +T+FI S
Subjt:  ISIAASKMPIRTQFITS

ATCG00790.1 ribosomal protein L161.4e-5788.98Show/hide
Query:  MKGISYRGNSICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEMSGVAENIARK
        +KGIS RGN ICFGRYA+Q LEPAWITSRQIEAGRRAMTRN RRGGKIWVRIFPDKPVT+RP ETRMGSGKGSPEYWVAVVKPG+ILYEM GV ENIARK
Subjt:  MKGISYRGNSICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEMSGVAENIARK

Query:  AISIAASKMPIRTQFITS
        AISIAASKMPI+TQFI S
Subjt:  AISIAASKMPIRTQFITS

ATMG00080.1 ribosomal protein L169.5e-2243.09Show/hide
Query:  KGISYRGNSICFGRYAIQALEPAWITSRQIEAGR--------RAMTRNARRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEMSGV
        +G    G  + FGRY  ++ +   ++ R IEA R        RAM+   RR GKIWVR+F D P+T +PTE RMG GKG+P  W+A V  G+I +EM GV
Subjt:  KGISYRGNSICFGRYAIQALEPAWITSRQIEAGR--------RAMTRNARRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEMSGV

Query:  AENIARKAISIAASKMPIRTQFI
        +   AR+A ++AA K    T+F+
Subjt:  AENIARKAISIAASKMPIRTQFI


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAAGGAATATCTTATCGAGGCAATAGTATTTGCTTCGGGAGATACGCTATTCAGGCACTTGAACCCGCTTGGATCACATCGAGACAAATCGAAGCCGGACGAAGGGC
AATGACACGAAATGCACGACGCGGTGGAAAAATATGGGTACGTATATTTCCGGACAAACCCGTTACACTAAGACCCACAGAAACACGTATGGGTTCAGGGAAAGGATCCC
CCGAATATTGGGTAGCTGTTGTTAAACCAGGTAGAATACTTTATGAAATGAGTGGAGTAGCCGAAAATATAGCCAGAAAAGCTATTTCAATAGCGGCATCCAAAATGCCT
ATACGAACCCAATTCATTACTTCGGGATAG
mRNA sequenceShow/hide mRNA sequence
ATGAAAGGAATATCTTATCGAGGCAATAGTATTTGCTTCGGGAGATACGCTATTCAGGCACTTGAACCCGCTTGGATCACATCGAGACAAATCGAAGCCGGACGAAGGGC
AATGACACGAAATGCACGACGCGGTGGAAAAATATGGGTACGTATATTTCCGGACAAACCCGTTACACTAAGACCCACAGAAACACGTATGGGTTCAGGGAAAGGATCCC
CCGAATATTGGGTAGCTGTTGTTAAACCAGGTAGAATACTTTATGAAATGAGTGGAGTAGCCGAAAATATAGCCAGAAAAGCTATTTCAATAGCGGCATCCAAAATGCCT
ATACGAACCCAATTCATTACTTCGGGATAG
Protein sequenceShow/hide protein sequence
MKGISYRGNSICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEMSGVAENIARKAISIAASKMP
IRTQFITSG