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IVF0021848 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0021848
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionE3 ubiquitin-protein ligase PRT1 isoform X2
Genome locationchr08:28251791..28252330
RNA-Seq ExpressionIVF0021848
SyntenyIVF0021848
Gene Ontology termsGO:0006259 - DNA metabolic process (biological process)
GO:0016772 - transferase activity, transferring phosphorus-containing groups (molecular function)
GO:0043167 - ion binding (molecular function)
GO:0097159 - organic cyclic compound binding (molecular function)
GO:0140097 - catalytic activity, acting on DNA (molecular function)
GO:1901363 - heterocyclic compound binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0042444.1 reverse transcriptase [Cucumis melo var. makuwa]1.40e-2163.33Show/hide
Query:  NWVISLESTSPTLVTLPIPDLNPYNKVLPMNLVPWITYNRRNLIKKVTSSTAQLASIQDSESSRDQDMGEKNSVSEIKVMSEMVVDEANE
        ++V+ LESTSPTLVTLP P  NP+N VLP N VPWI Y RRNL K+V S TAQ   IQDS+ SRDQDMGEK SV EI+VM +   D+A +
Subjt:  NWVISLESTSPTLVTLPIPDLNPYNKVLPMNLVPWITYNRRNLIKKVTSSTAQLASIQDSESSRDQDMGEKNSVSEIKVMSEMVVDEANE

KAA0047302.1 uncharacterized protein E6C27_scaffold908G001020 [Cucumis melo var. makuwa]3.41e-9092.21Show/hide
Query:  MVLEWDNDETINTNIDGTKIEENLIVATRICTVVDARFTAAMENHLFFL------------PNWVISLESTSPTLVTLPIPDLNPYNKVLPMNLVPWITY
        MVLEWDNDETINTNIDGTKIEENLIVATRICTVVDARFTAAMENHLFFL            PNWVISLESTSPTLVTLPIPDLNPYNKVLPMNLVPWITY
Subjt:  MVLEWDNDETINTNIDGTKIEENLIVATRICTVVDARFTAAMENHLFFL------------PNWVISLESTSPTLVTLPIPDLNPYNKVLPMNLVPWITY

Query:  NRRNLIKKVTSSTAQLASIQDSESSRDQDMGEKNSVSEIKVMSEMVVDEANEPK
        NRRNLIKKVTSSTAQLASIQDSESSRDQDMGEKNSVSEIKVMSEMVVDEANEPK
Subjt:  NRRNLIKKVTSSTAQLASIQDSESSRDQDMGEKNSVSEIKVMSEMVVDEANEPK

KAA0047883.1 reverse transcriptase [Cucumis melo var. makuwa]2.27e-1444.14Show/hide
Query:  MENHLFFLP------------NWVISLESTSPTLVTLPIPDLNPYNKVLPMNLVPWITYNRRNLIKKVTSSTAQLASIQDSESSRDQDMGEKNSVSEIKV
        +E+H FF              N V+ LESTSPT VTLP+P+ +PYN  LP N + WITYNRRNL K+V     Q+     S+ +  +D+ EK +V EI+V
Subjt:  MENHLFFLP------------NWVISLESTSPTLVTLPIPDLNPYNKVLPMNLVPWITYNRRNLIKKVTSSTAQLASIQDSESSRDQDMGEKNSVSEIKV

Query:  MSEMVVDEANE
        M+E   DEA +
Subjt:  MSEMVVDEANE

TYK02163.1 reverse transcriptase [Cucumis melo var. makuwa]6.13e-1545.95Show/hide
Query:  MENHLFFLP------------NWVISLESTSPTLVTLPIPDLNPYNKVLPMNLVPWITYNRRNLIKKVTSSTAQLASIQDSESSRDQDMGEKNSVSEIKV
        +E+H FF              N V+ LESTSPT VTLP+P+ +PYN VLP N V WITYNRRNL K+V     Q+     S+ +  +D+ EK +V EI+V
Subjt:  MENHLFFLP------------NWVISLESTSPTLVTLPIPDLNPYNKVLPMNLVPWITYNRRNLIKKVTSSTAQLASIQDSESSRDQDMGEKNSVSEIKV

Query:  MSEMVVDEANE
        M+E   DEA +
Subjt:  MSEMVVDEANE

TYK10815.1 Transposon Ty3-G Gag-Pol polyprotein [Cucumis melo var. makuwa]7.35e-1755.21Show/hide
Query:  NLIVATRICT--VVDARFTAAMENHLFFLPNWVISLESTSPTLVTLPIPDLNPYNKVLPMNLVPWITYNRRNLIKKVTSSTAQLASIQDSESSRDQ
        ++ +   +CT   ++A      E+  F   NW ISLEST+PTLVTL  PD  P+N VLPMN VPW TY RRNL K+V SST QLA IQDSE  RDQ
Subjt:  NLIVATRICT--VVDARFTAAMENHLFFLPNWVISLESTSPTLVTLPIPDLNPYNKVLPMNLVPWITYNRRNLIKKVTSSTAQLASIQDSESSRDQ

TrEMBL top hitse value%identityAlignment
A0A5A7TGA3 Reverse transcriptase5.9e-1863.33Show/hide
Query:  NWVISLESTSPTLVTLPIPDLNPYNKVLPMNLVPWITYNRRNLIKKVTSSTAQLASIQDSESSRDQDMGEKNSVSEIKVMSEMVVDEANE
        ++V+ LESTSPTLVTLP P  NP+N VLP N VPWI Y RRNL K+V S TAQ   IQDS+ SRDQDMGEK SV EI+VM +   D+A +
Subjt:  NWVISLESTSPTLVTLPIPDLNPYNKVLPMNLVPWITYNRRNLIKKVTSSTAQLASIQDSESSRDQDMGEKNSVSEIKVMSEMVVDEANE

A0A5A7TV20 Uncharacterized protein3.6e-6892.21Show/hide
Query:  MVLEWDNDETINTNIDGTKIEENLIVATRICTVVDARFTAAMENHLFFL------------PNWVISLESTSPTLVTLPIPDLNPYNKVLPMNLVPWITY
        MVLEWDNDETINTNIDGTKIEENLIVATRICTVVDARFTAAMENHLFFL            PNWVISLESTSPTLVTLPIPDLNPYNKVLPMNLVPWITY
Subjt:  MVLEWDNDETINTNIDGTKIEENLIVATRICTVVDARFTAAMENHLFFL------------PNWVISLESTSPTLVTLPIPDLNPYNKVLPMNLVPWITY

Query:  NRRNLIKKVTSSTAQLASIQDSESSRDQDMGEKNSVSEIKVMSEMVVDEANEPK
        NRRNLIKKVTSSTAQLASIQDSESSRDQDMGEKNSVSEIKVMSEMVVDEANEPK
Subjt:  NRRNLIKKVTSSTAQLASIQDSESSRDQDMGEKNSVSEIKVMSEMVVDEANEPK

A0A5A7TWC5 Reverse transcriptase8.2e-1250Show/hide
Query:  NWVISLESTSPTLVTLPIPDLNPYNKVLPMNLVPWITYNRRNLIKKVTSSTAQLASIQDSESSRDQDMGEKNSVSEIKVMSEMVVDEANE
        N V+ LESTSPT VTLP+P+ +PYN  LP N + WITYNRRNL K+V     Q+     S+ +  +D+ EK +V EI+VM+E   DEA +
Subjt:  NWVISLESTSPTLVTLPIPDLNPYNKVLPMNLVPWITYNRRNLIKKVTSSTAQLASIQDSESSRDQDMGEKNSVSEIKVMSEMVVDEANE

A0A5D3BR59 Reverse transcriptase2.2e-1252.22Show/hide
Query:  NWVISLESTSPTLVTLPIPDLNPYNKVLPMNLVPWITYNRRNLIKKVTSSTAQLASIQDSESSRDQDMGEKNSVSEIKVMSEMVVDEANE
        N V+ LESTSPT VTLP+P+ +PYN VLP N V WITYNRRNL K+V     Q+     S+ +  +D+ EK +V EI+VM+E   DEA +
Subjt:  NWVISLESTSPTLVTLPIPDLNPYNKVLPMNLVPWITYNRRNLIKKVTSSTAQLASIQDSESSRDQDMGEKNSVSEIKVMSEMVVDEANE

A0A5D3CH10 Transposon Ty3-G Gag-Pol polyprotein6.7e-1472.73Show/hide
Query:  NWVISLESTSPTLVTLPIPDLNPYNKVLPMNLVPWITYNRRNLIKKVTSSTAQLASIQDSESSRDQ
        NW ISLEST+PTLVTL  PD  P+N VLPMN VPW TY RRNL K+V SST QLA IQDSE  RDQ
Subjt:  NWVISLESTSPTLVTLPIPDLNPYNKVLPMNLVPWITYNRRNLIKKVTSSTAQLASIQDSESSRDQ

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTATTAGAGTGGGATAACGATGAAACCATAAACACCAATATCGATGGAACCAAAATAGAGGAGAACCTCATAGTTGCCACTAGGATCTGCACTGTCGTCGACGCTAG
ATTCACCGCTGCCATGGAGAATCATCTTTTCTTTCTTCCTAATTGGGTGATTTCTTTAGAGTCTACCAGTCCTACTCTTGTTACCTTACCCATACCTGACCTTAATCCCT
ATAACAAGGTCTTACCTATGAACCTAGTTCCCTGGATAACCTACAATAGGAGGAATCTCATAAAGAAAGTTACGTCTTCTACTGCTCAGCTGGCTTCGATCCAAGATTCT
GAATCATCACGAGATCAAGACATGGGTGAAAAAAATAGTGTTAGTGAAATTAAGGTCATGTCAGAAATGGTAGTTGATGAGGCTAATGAGCCTAAATAG
mRNA sequenceShow/hide mRNA sequence
ATGGTATTAGAGTGGGATAACGATGAAACCATAAACACCAATATCGATGGAACCAAAATAGAGGAGAACCTCATAGTTGCCACTAGGATCTGCACTGTCGTCGACGCTAG
ATTCACCGCTGCCATGGAGAATCATCTTTTCTTTCTTCCTAATTGGGTGATTTCTTTAGAGTCTACCAGTCCTACTCTTGTTACCTTACCCATACCTGACCTTAATCCCT
ATAACAAGGTCTTACCTATGAACCTAGTTCCCTGGATAACCTACAATAGGAGGAATCTCATAAAGAAAGTTACGTCTTCTACTGCTCAGCTGGCTTCGATCCAAGATTCT
GAATCATCACGAGATCAAGACATGGGTGAAAAAAATAGTGTTAGTGAAATTAAGGTCATGTCAGAAATGGTAGTTGATGAGGCTAATGAGCCTAAATAG
Protein sequenceShow/hide protein sequence
MVLEWDNDETINTNIDGTKIEENLIVATRICTVVDARFTAAMENHLFFLPNWVISLESTSPTLVTLPIPDLNPYNKVLPMNLVPWITYNRRNLIKKVTSSTAQLASIQDS
ESSRDQDMGEKNSVSEIKVMSEMVVDEANEPK