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IVF0021892 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0021892
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionRetrotransposon protein
Genome locationchr05:17057234..17057590
RNA-Seq ExpressionIVF0021892
SyntenyIVF0021892
Gene Ontology termsNA
InterPro domainsIPR024752 - Myb/SANT-like domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0036099.1 retrotransposon protein [Cucumis melo var. makuwa]3.37e-7692.37Show/hide
Query:  MSTSNRAPRHVWTKEEEPTLVEFLMELVSMGGWKSDNGTFRPGYLTQLVRMMAEKLSGCQVRATTVIDCRIKTLKRTFQVIAEMRGPTCSGFGWNDEEKC
        MSTSNRAPRHVWT+EEE TLVE LMELVSMGGWKSDNGTFRPGYL QLVRMMAEKL GCQVRATTVIDCRIKTLKRTFQ IAEMRGP CSGFGWNDEEKC
Subjt:  MSTSNRAPRHVWTKEEEPTLVEFLMELVSMGGWKSDNGTFRPGYLTQLVRMMAEKLSGCQVRATTVIDCRIKTLKRTFQVIAEMRGPTCSGFGWNDEEKC

Query:  IIAEKELFDNWVRVRKII
        I+AEKELFDNWVRVR II
Subjt:  IIAEKELFDNWVRVRKII
KAA0046637.1 retrotransposon protein [Cucumis melo var. makuwa]2.28e-7490.68Show/hide
Query:  MSTSNRAPRHVWTKEEEPTLVEFLMELVSMGGWKSDNGTFRPGYLTQLVRMMAEKLSGCQVRATTVIDCRIKTLKRTFQVIAEMRGPTCSGFGWNDEEKC
        MSTSNRAPRHVWT+EEE TLVE LMELVSMGGWKSDNGTFRPGYL QLVRMMAEKL GCQVRATTVIDCRIKTLKRTFQ IAEMRGP CSGFGWNDEEKC
Subjt:  MSTSNRAPRHVWTKEEEPTLVEFLMELVSMGGWKSDNGTFRPGYLTQLVRMMAEKLSGCQVRATTVIDCRIKTLKRTFQVIAEMRGPTCSGFGWNDEEKC

Query:  IIAEKELFDNWVRVRKII
        I+A+KELFDNWVRV  II
Subjt:  IIAEKELFDNWVRVRKII
KAA0049911.1 retrotransposon protein [Cucumis melo var. makuwa]4.87e-77100Show/hide
Query:  MSTSNRAPRHVWTKEEEPTLVEFLMELVSMGGWKSDNGTFRPGYLTQLVRMMAEKLSGCQVRATTVIDCRIKTLKRTFQVIAEMRGPTCSGFGWNDEEKC
        MSTSNRAPRHVWTKEEEPTLVEFLMELVSMGGWKSDNGTFRPGYLTQLVRMMAEKLSGCQVRATTVIDCRIKTLKRTFQVIAEMRGPTCSGFGWNDEEKC
Subjt:  MSTSNRAPRHVWTKEEEPTLVEFLMELVSMGGWKSDNGTFRPGYLTQLVRMMAEKLSGCQVRATTVIDCRIKTLKRTFQVIAEMRGPTCSGFGWNDEEKC

Query:  IIAEKELFDNWVR
        IIAEKELFDNWVR
Subjt:  IIAEKELFDNWVR
KAA0053616.1 retrotransposon protein [Cucumis melo var. makuwa]5.60e-7591.53Show/hide
Query:  MSTSNRAPRHVWTKEEEPTLVEFLMELVSMGGWKSDNGTFRPGYLTQLVRMMAEKLSGCQVRATTVIDCRIKTLKRTFQVIAEMRGPTCSGFGWNDEEKC
        MSTSNRAPRHVWT+EEE TLVE LMELVSMGGWKSDNGTFRPGYL QLVRMMAEKL GCQVRATTVIDCRIKTLKRTFQ IAEMRGP CSGFGWNDEEKC
Subjt:  MSTSNRAPRHVWTKEEEPTLVEFLMELVSMGGWKSDNGTFRPGYLTQLVRMMAEKLSGCQVRATTVIDCRIKTLKRTFQVIAEMRGPTCSGFGWNDEEKC

Query:  IIAEKELFDNWVRVRKII
        I+AEKELFDNWVRV  II
Subjt:  IIAEKELFDNWVRVRKII
TYK07652.1 retrotransposon protein [Cucumis melo var. makuwa]4.87e-77100Show/hide
Query:  MSTSNRAPRHVWTKEEEPTLVEFLMELVSMGGWKSDNGTFRPGYLTQLVRMMAEKLSGCQVRATTVIDCRIKTLKRTFQVIAEMRGPTCSGFGWNDEEKC
        MSTSNRAPRHVWTKEEEPTLVEFLMELVSMGGWKSDNGTFRPGYLTQLVRMMAEKLSGCQVRATTVIDCRIKTLKRTFQVIAEMRGPTCSGFGWNDEEKC
Subjt:  MSTSNRAPRHVWTKEEEPTLVEFLMELVSMGGWKSDNGTFRPGYLTQLVRMMAEKLSGCQVRATTVIDCRIKTLKRTFQVIAEMRGPTCSGFGWNDEEKC

Query:  IIAEKELFDNWVR
        IIAEKELFDNWVR
Subjt:  IIAEKELFDNWVR
TrEMBL top hitse value%identityAlignment
A0A5A7T3X9 Retrotransposon protein3.7e-5892.37Show/hide
Query:  MSTSNRAPRHVWTKEEEPTLVEFLMELVSMGGWKSDNGTFRPGYLTQLVRMMAEKLSGCQVRATTVIDCRIKTLKRTFQVIAEMRGPTCSGFGWNDEEKC
        MSTSNRAPRHVWT+EEE TLVE LMELVSMGGWKSDNGTFRPGYL QLVRMMAEKL GCQVRATTVIDCRIKTLKRTFQ IAEMRGP CSGFGWNDEEKC
Subjt:  MSTSNRAPRHVWTKEEEPTLVEFLMELVSMGGWKSDNGTFRPGYLTQLVRMMAEKLSGCQVRATTVIDCRIKTLKRTFQVIAEMRGPTCSGFGWNDEEKC

Query:  IIAEKELFDNWVRVRKII
        I+AEKELFDNWVRVR II
Subjt:  IIAEKELFDNWVRVRKII
A0A5A7TXH6 Retrotransposon protein9.1e-5790.68Show/hide
Query:  MSTSNRAPRHVWTKEEEPTLVEFLMELVSMGGWKSDNGTFRPGYLTQLVRMMAEKLSGCQVRATTVIDCRIKTLKRTFQVIAEMRGPTCSGFGWNDEEKC
        MSTSNRAPRHVWT+EEE TLVE LMELVSMGGWKSDNGTFRPGYL QLVRMMAEKL GCQVRATTVIDCRIKTLKRTFQ IAEMRGP CSGFGWNDEEKC
Subjt:  MSTSNRAPRHVWTKEEEPTLVEFLMELVSMGGWKSDNGTFRPGYLTQLVRMMAEKLSGCQVRATTVIDCRIKTLKRTFQVIAEMRGPTCSGFGWNDEEKC

Query:  IIAEKELFDNWVRVRKII
        I+A+KELFDNWVRV  II
Subjt:  IIAEKELFDNWVRVRKII
A0A5A7U8I3 Retrotransposon protein6.1e-61100Show/hide
Query:  MSTSNRAPRHVWTKEEEPTLVEFLMELVSMGGWKSDNGTFRPGYLTQLVRMMAEKLSGCQVRATTVIDCRIKTLKRTFQVIAEMRGPTCSGFGWNDEEKC
        MSTSNRAPRHVWTKEEEPTLVEFLMELVSMGGWKSDNGTFRPGYLTQLVRMMAEKLSGCQVRATTVIDCRIKTLKRTFQVIAEMRGPTCSGFGWNDEEKC
Subjt:  MSTSNRAPRHVWTKEEEPTLVEFLMELVSMGGWKSDNGTFRPGYLTQLVRMMAEKLSGCQVRATTVIDCRIKTLKRTFQVIAEMRGPTCSGFGWNDEEKC

Query:  IIAEKELFDNWVR
        IIAEKELFDNWVR
Subjt:  IIAEKELFDNWVR
A0A5A7UHB1 Retrotransposon protein3.1e-5791.53Show/hide
Query:  MSTSNRAPRHVWTKEEEPTLVEFLMELVSMGGWKSDNGTFRPGYLTQLVRMMAEKLSGCQVRATTVIDCRIKTLKRTFQVIAEMRGPTCSGFGWNDEEKC
        MSTSNRAPRHVWT+EEE TLVE LMELVSMGGWKSDNGTFRPGYL QLVRMMAEKL GCQVRATTVIDCRIKTLKRTFQ IAEMRGP CSGFGWNDEEKC
Subjt:  MSTSNRAPRHVWTKEEEPTLVEFLMELVSMGGWKSDNGTFRPGYLTQLVRMMAEKLSGCQVRATTVIDCRIKTLKRTFQVIAEMRGPTCSGFGWNDEEKC

Query:  IIAEKELFDNWVRVRKII
        I+AEKELFDNWVRV  II
Subjt:  IIAEKELFDNWVRVRKII
A0A5D3C8P0 Retrotransposon protein6.1e-61100Show/hide
Query:  MSTSNRAPRHVWTKEEEPTLVEFLMELVSMGGWKSDNGTFRPGYLTQLVRMMAEKLSGCQVRATTVIDCRIKTLKRTFQVIAEMRGPTCSGFGWNDEEKC
        MSTSNRAPRHVWTKEEEPTLVEFLMELVSMGGWKSDNGTFRPGYLTQLVRMMAEKLSGCQVRATTVIDCRIKTLKRTFQVIAEMRGPTCSGFGWNDEEKC
Subjt:  MSTSNRAPRHVWTKEEEPTLVEFLMELVSMGGWKSDNGTFRPGYLTQLVRMMAEKLSGCQVRATTVIDCRIKTLKRTFQVIAEMRGPTCSGFGWNDEEKC

Query:  IIAEKELFDNWVR
        IIAEKELFDNWVR
Subjt:  IIAEKELFDNWVR
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCAACCTCAAATCGTGCCCCGAGACATGTCTGGACGAAGGAGGAGGAGCCCACTCTTGTGGAATTTTTAATGGAGTTGGTGTCAATGGGGGGATGGAAATCAGATAA
TGGTACGTTCCGTCCAGGTTACCTTACGCAGTTGGTACGCATGATGGCGGAGAAACTATCTGGATGTCAGGTCCGAGCAACAACTGTAATTGATTGTAGAATTAAGACAC
TGAAGCGAACATTCCAGGTCATTGCCGAAATGCGGGGCCCAACGTGCAGTGGCTTTGGGTGGAATGATGAAGAGAAATGTATCATTGCGGAGAAGGAATTATTTGATAAT
TGGGTTAGGGTAAGGAAAATAATTTAA
mRNA sequenceShow/hide mRNA sequence
ATGTCAACCTCAAATCGTGCCCCGAGACATGTCTGGACGAAGGAGGAGGAGCCCACTCTTGTGGAATTTTTAATGGAGTTGGTGTCAATGGGGGGATGGAAATCAGATAA
TGGTACGTTCCGTCCAGGTTACCTTACGCAGTTGGTACGCATGATGGCGGAGAAACTATCTGGATGTCAGGTCCGAGCAACAACTGTAATTGATTGTAGAATTAAGACAC
TGAAGCGAACATTCCAGGTCATTGCCGAAATGCGGGGCCCAACGTGCAGTGGCTTTGGGTGGAATGATGAAGAGAAATGTATCATTGCGGAGAAGGAATTATTTGATAAT
TGGGTTAGGGTAAGGAAAATAATTTAA
Protein sequenceShow/hide protein sequence
MSTSNRAPRHVWTKEEEPTLVEFLMELVSMGGWKSDNGTFRPGYLTQLVRMMAEKLSGCQVRATTVIDCRIKTLKRTFQVIAEMRGPTCSGFGWNDEEKCIIAEKELFDN
WVRVRKII