; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

IVF0021895 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0021895
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionRetrovirus-related Pol polyprotein from transposon 412 family
Genome locationchr10:20379564..20379989
RNA-Seq ExpressionIVF0021895
SyntenyIVF0021895
Gene Ontology termsNA
InterPro domainsIPR041577 - Reverse transcriptase/retrotransposon-derived protein, RNase H-like domain
IPR043128 - Reverse transcriptase/Diguanylate cyclase domain
IPR043502 - DNA/RNA polymerase superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0061185.1 Retrovirus-related Pol polyprotein from transposon 412 family [Cucumis melo var. makuwa]2.67e-93100Show/hide
Query:  MVREKIMLGHKISHAGLEVELVKIDVVSKLSPLSDFKPLRSFLGHAESYRRFIQRFSQISKPLSNQLFIDQPYDFDEKCNQAFQIIKDALTSTSIFITQD
        MVREKIMLGHKISHAGLEVELVKIDVVSKLSPLSDFKPLRSFLGHAESYRRFIQRFSQISKPLSNQLFIDQPYDFDEKCNQAFQIIKDALTSTSIFITQD
Subjt:  MVREKIMLGHKISHAGLEVELVKIDVVSKLSPLSDFKPLRSFLGHAESYRRFIQRFSQISKPLSNQLFIDQPYDFDEKCNQAFQIIKDALTSTSIFITQD

Query:  SSQQFKLMSNMTDVAVVAMLGQKKDKVIHSIYYAGKIVNEA
        SSQQFKLMSNMTDVAVVAMLGQKKDKVIHSIYYAGKIVNEA
Subjt:  SSQQFKLMSNMTDVAVVAMLGQKKDKVIHSIYYAGKIVNEA

MCI13478.1 hypothetical protein [Trifolium medium]4.30e-4151.77Show/hide
Query:  MVREKIMLGHKISHAGLEVELVKIDVVSKLSPLSDFKPLRSFLGHAESYRRFIQRFSQISKPLSNQLFIDQPYDFDEKCNQAFQIIKDALTSTSIFITQD
        MV+E I+LGH+IS  GLEV+  K++V+ KL P  + K +RSFLGHA  YRRFI+ FS+I+KPL   L  D P++F E+C +AF+ +K AL +  + I  D
Subjt:  MVREKIMLGHKISHAGLEVELVKIDVVSKLSPLSDFKPLRSFLGHAESYRRFIQRFSQISKPLSNQLFIDQPYDFDEKCNQAFQIIKDALTSTSIFITQD

Query:  SSQQFKLMSNMTDVAVVAMLGQKKDKVIHSIYYAGKIVNEA
         S+ F+LM + +D AV A+LGQ+ DKV HSIYYA + +NEA
Subjt:  SSQQFKLMSNMTDVAVVAMLGQKKDKVIHSIYYAGKIVNEA

TYJ99659.1 Retrovirus-related Pol polyprotein from transposon 412 family [Cucumis melo var. makuwa]5.55e-4359.56Show/hide
Query:  MVREKIMLGHKISHAGLEVELVKIDVVSKLSPLSDFKPLRSFLGHAESYRRFIQRFSQISKPLSNQLFIDQPYDFDEKCNQAFQIIKDALTSTSIFITQD
        MVRE+I+LG KIS+  L+V+L KIDVV K    SD KPLRSFLG  + YRRFI++  QI+KPL   L  DQ Y+FD+K NQAFQ +KDAL    IFI  +
Subjt:  MVREKIMLGHKISHAGLEVELVKIDVVSKLSPLSDFKPLRSFLGHAESYRRFIQRFSQISKPLSNQLFIDQPYDFDEKCNQAFQIIKDALTSTSIFITQD

Query:  SSQQFKLMSNMTDVAVVAMLGQKKDKVIHSIYYAGK
         SQ F+LM + +DVAV AM GQKK+KVIH IYY  K
Subjt:  SSQQFKLMSNMTDVAVVAMLGQKKDKVIHSIYYAGK

XP_038874939.1 LOW QUALITY PROTEIN: uncharacterized protein LOC120067452 [Benincasa hispida]4.27e-4157.45Show/hide
Query:  MVREKIMLGHKISHAGLEVELVKIDVVSKLSPLSDFKPLRSFLGHAESYRRFIQRFSQISKPLSNQLFIDQPYDFDEKCNQAFQIIKDALTSTSIFITQD
        M+ E I+LGHKIS AGLEV+  KID +SKL PL + K LRSFLGHA  YRRFI+ FSQI +PLS  L  D+ Y+FD+ C +AF  +KDAL ST I I  D
Subjt:  MVREKIMLGHKISHAGLEVELVKIDVVSKLSPLSDFKPLRSFLGHAESYRRFIQRFSQISKPLSNQLFIDQPYDFDEKCNQAFQIIKDALTSTSIFITQD

Query:  SSQQFKLMSNMTDVAVVAMLGQKKDKVIHSIYYAGKIVNEA
         +Q F LM + +   V A+L Q+KDKV+HSIYYA K +N+A
Subjt:  SSQQFKLMSNMTDVAVVAMLGQKKDKVIHSIYYAGKIVNEA

XP_042065855.1 uncharacterized protein LOC121809344 [Salvia splendens]6.38e-4154.61Show/hide
Query:  MVREKIMLGHKISHAGLEVELVKIDVVSKLSPLSDFKPLRSFLGHAESYRRFIQRFSQISKPLSNQLFIDQPYDFDEKCNQAFQIIKDALTSTSIFITQD
        MV+E I+LGHK+S  GLE++  KIDV+SKL P ++ K +RSFLGHA  YRRFI+ FS+I+KPL N L  D  + FDEKC +AF+++K  L    I IT D
Subjt:  MVREKIMLGHKISHAGLEVELVKIDVVSKLSPLSDFKPLRSFLGHAESYRRFIQRFSQISKPLSNQLFIDQPYDFDEKCNQAFQIIKDALTSTSIFITQD

Query:  SSQQFKLMSNMTDVAVVAMLGQKKDKVIHSIYYAGKIVNEA
         S+ F+LM + +D AV A+LGQ++DKV+H++YYA K++NEA
Subjt:  SSQQFKLMSNMTDVAVVAMLGQKKDKVIHSIYYAGKIVNEA

TrEMBL top hitse value%identityAlignment
A0A1S3TG13 uncharacterized protein LOC1067551227.1e-3250.35Show/hide
Query:  MVREKIMLGHKISHAGLEVELVKIDVVSKLSPLSDFKPLRSFLGHAESYRRFIQRFSQISKPLSNQLFIDQPYDFDEKCNQAFQIIKDALTSTSIFITQD
        MV E I+LGHKIS  G+EV+  K++V+ KL P S+ K +RSFLGHA  YRRFI+ FS+I+KPLSN L  D P++   +C QAF ++K +L S  + I  D
Subjt:  MVREKIMLGHKISHAGLEVELVKIDVVSKLSPLSDFKPLRSFLGHAESYRRFIQRFSQISKPLSNQLFIDQPYDFDEKCNQAFQIIKDALTSTSIFITQD

Query:  SSQQFKLMSNMTDVAVVAMLGQKKDKVIHSIYYAGKIVNEA
         ++ F+LM + +D A+ A+LGQ+++KV H+IYYA  ++NEA
Subjt:  SSQQFKLMSNMTDVAVVAMLGQKKDKVIHSIYYAGKIVNEA

A0A445L705 Aspartate transaminase8.4e-3355.32Show/hide
Query:  MVREKIMLGHKISHAGLEVELVKIDVVSKLSPLSDFKPLRSFLGHAESYRRFIQRFSQISKPLSNQLFIDQPYDFDEKCNQAFQIIKDALTSTSIFITQD
        MVRE I+LGHKIS   +EV+  KIDV+ +L P  + K +RSFLGHA  YRRFI+ FS+I+KPLSN L  D  + FD+ C+ AFQ +K  LT+T + I  D
Subjt:  MVREKIMLGHKISHAGLEVELVKIDVVSKLSPLSDFKPLRSFLGHAESYRRFIQRFSQISKPLSNQLFIDQPYDFDEKCNQAFQIIKDALTSTSIFITQD

Query:  SSQQFKLMSNMTDVAVVAMLGQKKDKVIHSIYYAGKIVNEA
         S+ F+LM N +D AV A+LGQ+ DKV H+IYYA K++NEA
Subjt:  SSQQFKLMSNMTDVAVVAMLGQKKDKVIHSIYYAGKIVNEA

A0A5D3BL15 Retrovirus-related Pol polyprotein from transposon 412 family5.4e-3259.56Show/hide
Query:  MVREKIMLGHKISHAGLEVELVKIDVVSKLSPLSDFKPLRSFLGHAESYRRFIQRFSQISKPLSNQLFIDQPYDFDEKCNQAFQIIKDALTSTSIFITQD
        MVRE+I+LG KIS+  L+V+L KIDVV K    SD KPLRSFLG  + YRRFI++  QI+KPL   L  DQ Y+FD+K NQAFQ +KDAL    IFI  +
Subjt:  MVREKIMLGHKISHAGLEVELVKIDVVSKLSPLSDFKPLRSFLGHAESYRRFIQRFSQISKPLSNQLFIDQPYDFDEKCNQAFQIIKDALTSTSIFITQD

Query:  SSQQFKLMSNMTDVAVVAMLGQKKDKVIHSIYYAGK
         SQ F+LM + +DVAV AM GQKK+KVIH IYY  K
Subjt:  SSQQFKLMSNMTDVAVVAMLGQKKDKVIHSIYYAGK

A0A5D3C349 Retrovirus-related Pol polyprotein from transposon 412 family2.3e-70100Show/hide
Query:  MVREKIMLGHKISHAGLEVELVKIDVVSKLSPLSDFKPLRSFLGHAESYRRFIQRFSQISKPLSNQLFIDQPYDFDEKCNQAFQIIKDALTSTSIFITQD
        MVREKIMLGHKISHAGLEVELVKIDVVSKLSPLSDFKPLRSFLGHAESYRRFIQRFSQISKPLSNQLFIDQPYDFDEKCNQAFQIIKDALTSTSIFITQD
Subjt:  MVREKIMLGHKISHAGLEVELVKIDVVSKLSPLSDFKPLRSFLGHAESYRRFIQRFSQISKPLSNQLFIDQPYDFDEKCNQAFQIIKDALTSTSIFITQD

Query:  SSQQFKLMSNMTDVAVVAMLGQKKDKVIHSIYYAGKIVNEA
        SSQQFKLMSNMTDVAVVAMLGQKKDKVIHSIYYAGKIVNEA
Subjt:  SSQQFKLMSNMTDVAVVAMLGQKKDKVIHSIYYAGKIVNEA

A0A5N6LK23 Reverse transcriptase1.2e-3151.06Show/hide
Query:  MVREKIMLGHKISHAGLEVELVKIDVVSKLSPLSDFKPLRSFLGHAESYRRFIQRFSQISKPLSNQLFIDQPYDFDEKCNQAFQIIKDALTSTSIFITQD
        MV+E+I+LGHKIS AG+EV+  KI+ +SKL P ++ K +RSFLGHA  YRRFI+ FS+IS+P++  L  D P+ F E+C +AF+++K+ L +  I I  D
Subjt:  MVREKIMLGHKISHAGLEVELVKIDVVSKLSPLSDFKPLRSFLGHAESYRRFIQRFSQISKPLSNQLFIDQPYDFDEKCNQAFQIIKDALTSTSIFITQD

Query:  SSQQFKLMSNMTDVAVVAMLGQKKDKVIHSIYYAGKIVNEA
         S  F+LM + +D AV A+LGQ++DK  H IYYA K +N+A
Subjt:  SSQQFKLMSNMTDVAVVAMLGQKKDKVIHSIYYAGKIVNEA

SwissProt top hitse value%identityAlignment
P0CT34 Transposon Tf2-1 polyprotein1.4e-0834.09Show/hide
Query:  LGHKISHAGLEVELVKIDVVSKLSPLSDFKPLRSFLGHAESYRRFIQRFSQISKPLSNQLFIDQPYDFDEKCNQAFQIIKDALTSTSIFITQDSSQQFKL
        +G+ IS  G       ID V +     + K LR FLG     R+FI + SQ++ PL+N L  D  + +     QA + IK  L S  +    D S++  L
Subjt:  LGHKISHAGLEVELVKIDVVSKLSPLSDFKPLRSFLGHAESYRRFIQRFSQISKPLSNQLFIDQPYDFDEKCNQAFQIIKDALTSTSIFITQDSSQQFKL

Query:  MSNMTDVAVVAMLGQK--KDKVIHSIYYAGKI
         ++ +DVAV A+L QK   DK     YY+ K+
Subjt:  MSNMTDVAVVAMLGQK--KDKVIHSIYYAGKI

P0CT35 Transposon Tf2-2 polyprotein1.4e-0834.09Show/hide
Query:  LGHKISHAGLEVELVKIDVVSKLSPLSDFKPLRSFLGHAESYRRFIQRFSQISKPLSNQLFIDQPYDFDEKCNQAFQIIKDALTSTSIFITQDSSQQFKL
        +G+ IS  G       ID V +     + K LR FLG     R+FI + SQ++ PL+N L  D  + +     QA + IK  L S  +    D S++  L
Subjt:  LGHKISHAGLEVELVKIDVVSKLSPLSDFKPLRSFLGHAESYRRFIQRFSQISKPLSNQLFIDQPYDFDEKCNQAFQIIKDALTSTSIFITQDSSQQFKL

Query:  MSNMTDVAVVAMLGQK--KDKVIHSIYYAGKI
         ++ +DVAV A+L QK   DK     YY+ K+
Subjt:  MSNMTDVAVVAMLGQK--KDKVIHSIYYAGKI

P0CT36 Transposon Tf2-3 polyprotein1.4e-0834.09Show/hide
Query:  LGHKISHAGLEVELVKIDVVSKLSPLSDFKPLRSFLGHAESYRRFIQRFSQISKPLSNQLFIDQPYDFDEKCNQAFQIIKDALTSTSIFITQDSSQQFKL
        +G+ IS  G       ID V +     + K LR FLG     R+FI + SQ++ PL+N L  D  + +     QA + IK  L S  +    D S++  L
Subjt:  LGHKISHAGLEVELVKIDVVSKLSPLSDFKPLRSFLGHAESYRRFIQRFSQISKPLSNQLFIDQPYDFDEKCNQAFQIIKDALTSTSIFITQDSSQQFKL

Query:  MSNMTDVAVVAMLGQK--KDKVIHSIYYAGKI
         ++ +DVAV A+L QK   DK     YY+ K+
Subjt:  MSNMTDVAVVAMLGQK--KDKVIHSIYYAGKI

P0CT41 Transposon Tf2-12 polyprotein1.4e-0834.09Show/hide
Query:  LGHKISHAGLEVELVKIDVVSKLSPLSDFKPLRSFLGHAESYRRFIQRFSQISKPLSNQLFIDQPYDFDEKCNQAFQIIKDALTSTSIFITQDSSQQFKL
        +G+ IS  G       ID V +     + K LR FLG     R+FI + SQ++ PL+N L  D  + +     QA + IK  L S  +    D S++  L
Subjt:  LGHKISHAGLEVELVKIDVVSKLSPLSDFKPLRSFLGHAESYRRFIQRFSQISKPLSNQLFIDQPYDFDEKCNQAFQIIKDALTSTSIFITQDSSQQFKL

Query:  MSNMTDVAVVAMLGQK--KDKVIHSIYYAGKI
         ++ +DVAV A+L QK   DK     YY+ K+
Subjt:  MSNMTDVAVVAMLGQK--KDKVIHSIYYAGKI

Q9UR07 Transposon Tf2-11 polyprotein1.4e-0834.09Show/hide
Query:  LGHKISHAGLEVELVKIDVVSKLSPLSDFKPLRSFLGHAESYRRFIQRFSQISKPLSNQLFIDQPYDFDEKCNQAFQIIKDALTSTSIFITQDSSQQFKL
        +G+ IS  G       ID V +     + K LR FLG     R+FI + SQ++ PL+N L  D  + +     QA + IK  L S  +    D S++  L
Subjt:  LGHKISHAGLEVELVKIDVVSKLSPLSDFKPLRSFLGHAESYRRFIQRFSQISKPLSNQLFIDQPYDFDEKCNQAFQIIKDALTSTSIFITQDSSQQFKL

Query:  MSNMTDVAVVAMLGQK--KDKVIHSIYYAGKI
         ++ +DVAV A+L QK   DK     YY+ K+
Subjt:  MSNMTDVAVVAMLGQK--KDKVIHSIYYAGKI

Arabidopsis top hitse value%identityAlignment
ATMG00860.1 DNA/RNA polymerases superfamily protein4.7e-0428Show/hide
Query:  LGHK--ISHAGLEVELVKIDVVSKLSPLSDFKPLRSFLGHAESYRRFIQRFSQISKPLSNQLFIDQPYDFDEKCNQAFQIIKDALTSTSIFITQDSSQQF
        LGH+  IS  G+  +  K++ +       +   LR FLG    YRRF++ + +I +PL+ +L       + E    AF+ +K A+T+  +    D    F
Subjt:  LGHK--ISHAGLEVELVKIDVVSKLSPLSDFKPLRSFLGHAESYRRFIQRFSQISKPLSNQLFIDQPYDFDEKCNQAFQIIKDALTSTSIFITQDSSQQF


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTTAGAGAGAAAATTATGCTTGGGCACAAGATCTCTCATGCGGGATTGGAAGTGGAGCTCGTGAAGATTGATGTGGTAAGTAAGTTGTCACCCCTTTCAGATTTCAA
ACCATTGAGGAGCTTTCTGGGTCATGCGGAATCTTACAGAAGATTCATCCAAAGATTTTCCCAAATATCCAAACCTCTTAGTAACCAACTATTCATCGATCAACCATATG
ACTTTGATGAGAAATGCAACCAGGCGTTCCAGATTATAAAAGACGCGTTGACCTCAACATCTATCTTCATCACGCAAGATTCGTCACAACAATTTAAACTTATGTCTAAC
ATGACTGATGTGGCGGTAGTGGCTATGCTAGGTCAAAAGAAGGATAAAGTTATCCACTCTATCTATTACGCGGGCAAAATCGTCAACGAGGCTTAA
mRNA sequenceShow/hide mRNA sequence
ATGGTTAGAGAGAAAATTATGCTTGGGCACAAGATCTCTCATGCGGGATTGGAAGTGGAGCTCGTGAAGATTGATGTGGTAAGTAAGTTGTCACCCCTTTCAGATTTCAA
ACCATTGAGGAGCTTTCTGGGTCATGCGGAATCTTACAGAAGATTCATCCAAAGATTTTCCCAAATATCCAAACCTCTTAGTAACCAACTATTCATCGATCAACCATATG
ACTTTGATGAGAAATGCAACCAGGCGTTCCAGATTATAAAAGACGCGTTGACCTCAACATCTATCTTCATCACGCAAGATTCGTCACAACAATTTAAACTTATGTCTAAC
ATGACTGATGTGGCGGTAGTGGCTATGCTAGGTCAAAAGAAGGATAAAGTTATCCACTCTATCTATTACGCGGGCAAAATCGTCAACGAGGCTTAA
Protein sequenceShow/hide protein sequence
MVREKIMLGHKISHAGLEVELVKIDVVSKLSPLSDFKPLRSFLGHAESYRRFIQRFSQISKPLSNQLFIDQPYDFDEKCNQAFQIIKDALTSTSIFITQDSSQQFKLMSN
MTDVAVVAMLGQKKDKVIHSIYYAGKIVNEA