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IVF0021944 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0021944
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionIntegrase catalytic domain-containing protein
Genome locationchr09:13474704..13474970
RNA-Seq ExpressionIVF0021944
SyntenyIVF0021944
Gene Ontology termsNA
InterPro domainsIPR041373 - Reverse transcriptase, RNase H-like domain
IPR043502 - DNA/RNA polymerase superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0062295.1 hypothetical protein E6C27_scaffold154G00380 [Cucumis melo var. makuwa]7.12e-54100Show/hide
Query:  MCDASDVVIGAMLGQKNDKVIYPIYNMSKTLNEAQENYTTTEKELLAVVFAIEKYVSYIVGSKVTIHSDHFAIRYLMVKKDAQPQLIS
        MCDASDVVIGAMLGQKNDKVIYPIYNMSKTLNEAQENYTTTEKELLAVVFAIEKYVSYIVGSKVTIHSDHFAIRYLMVKKDAQPQLIS
Subjt:  MCDASDVVIGAMLGQKNDKVIYPIYNMSKTLNEAQENYTTTEKELLAVVFAIEKYVSYIVGSKVTIHSDHFAIRYLMVKKDAQPQLIS

KAA0062414.1 Retrovirus-related Pol polyprotein from transposon 17.6 [Cucumis melo var. makuwa]1.14e-3678.16Show/hide
Query:  MCDASDVVIGAMLGQKNDKVIYPIYNMSKTLNEAQENYTTTEKELLAVVFAIEKYVSYIVGSKVTIHSDHFAIRYLMVKKDAQPQLI
        MCDASDVV+G M GQK DKV  PIY   KTLNEA+ENYTT EKELLA+VFAIEK+ SYIVGSKVTIHSDH AIRYLM KKDA+  LI
Subjt:  MCDASDVVIGAMLGQKNDKVIYPIYNMSKTLNEAQENYTTTEKELLAVVFAIEKYVSYIVGSKVTIHSDHFAIRYLMVKKDAQPQLI

MCI26715.1 hypothetical protein [Trifolium medium]7.70e-3366.67Show/hide
Query:  MCDASDVVIGAMLGQKNDKVIYPIYNMSKTLNEAQENYTTTEKELLAVVFAIEKYVSYIVGSKVTIHSDHFAIRYLMVKKDAQPQLI
        MCDASD V+GA+LGQ++DK  + IY  S+TLNEAQ NYTTTEKELLAVVFA +K+ SY+VG+KV +++DH AI+YL+ KKDA+P+LI
Subjt:  MCDASDVVIGAMLGQKNDKVIYPIYNMSKTLNEAQENYTTTEKELLAVVFAIEKYVSYIVGSKVTIHSDHFAIRYLMVKKDAQPQLI

TYK26567.1 Retrovirus-related Pol polyprotein from transposon 17.6 [Cucumis melo var. makuwa]2.46e-3678.16Show/hide
Query:  MCDASDVVIGAMLGQKNDKVIYPIYNMSKTLNEAQENYTTTEKELLAVVFAIEKYVSYIVGSKVTIHSDHFAIRYLMVKKDAQPQLI
        MCDASDVV+G M GQK DKV  PIY   KTLNEA+ENYTT EKELLA+VFAIEK+ SYIVGSKVTIHSDH AIRYLM KKDA+  LI
Subjt:  MCDASDVVIGAMLGQKNDKVIYPIYNMSKTLNEAQENYTTTEKELLAVVFAIEKYVSYIVGSKVTIHSDHFAIRYLMVKKDAQPQLI

WP_217833163.1 Ty3/Gypsy family RNase HI domain-containing protein, partial [Synechococcus sp. PCC 7002]7.90e-3667.82Show/hide
Query:  MCDASDVVIGAMLGQKNDKVIYPIYNMSKTLNEAQENYTTTEKELLAVVFAIEKYVSYIVGSKVTIHSDHFAIRYLMVKKDAQPQLI
        MCDAS+ V+GA+LGQ+ +K+++PIY  SKTLN  QENYTTTEKE+LA+VFA++K+ +Y +GSKVTI+SDH AI+YLMVKKDA+P+LI
Subjt:  MCDASDVVIGAMLGQKNDKVIYPIYNMSKTLNEAQENYTTTEKELLAVVFAIEKYVSYIVGSKVTIHSDHFAIRYLMVKKDAQPQLI

TrEMBL top hitse value%identityAlignment
A0A1U7XMD2 uncharacterized protein LOC1042381792.0e-2464.37Show/hide
Query:  MCDASDVVIGAMLGQKNDKVIYPIYNMSKTLNEAQENYTTTEKELLAVVFAIEKYVSYIVGSKVTIHSDHFAIRYLMVKKDAQPQLI
        MCDASD+ +GA+LGQ+ +K+ +PIY  SKTLN AQ NYT TEKELLAVV+A +K++SY+VG+KV +++DH AIRYL  KKDA+P+LI
Subjt:  MCDASDVVIGAMLGQKNDKVIYPIYNMSKTLNEAQENYTTTEKELLAVVFAIEKYVSYIVGSKVTIHSDHFAIRYLMVKKDAQPQLI

A0A392QTZ6 RT_RNaseH_2 domain-containing protein (Fragment)6.8e-2566.67Show/hide
Query:  MCDASDVVIGAMLGQKNDKVIYPIYNMSKTLNEAQENYTTTEKELLAVVFAIEKYVSYIVGSKVTIHSDHFAIRYLMVKKDAQPQLI
        MCDASD V+GA+LGQ++DK  + IY  S+TLNEAQ NYTTTEKELLAVVFA +K+ SY+VG+KV +++DH AI+YL+ KKDA+P+LI
Subjt:  MCDASDVVIGAMLGQKNDKVIYPIYNMSKTLNEAQENYTTTEKELLAVVFAIEKYVSYIVGSKVTIHSDHFAIRYLMVKKDAQPQLI

A0A5A7V586 Retrovirus-related Pol polyprotein from transposon 17.61.9e-2778.16Show/hide
Query:  MCDASDVVIGAMLGQKNDKVIYPIYNMSKTLNEAQENYTTTEKELLAVVFAIEKYVSYIVGSKVTIHSDHFAIRYLMVKKDAQPQLI
        MCDASDVV+G M GQK DKV  PIY   KTLNEA+ENYTT EKELLA+VFAIEK+ SYIVGSKVTIHSDH AIRYLM KKDA+  LI
Subjt:  MCDASDVVIGAMLGQKNDKVIYPIYNMSKTLNEAQENYTTTEKELLAVVFAIEKYVSYIVGSKVTIHSDHFAIRYLMVKKDAQPQLI

A0A5A7V8R9 RT_RNaseH domain-containing protein2.6e-40100Show/hide
Query:  MCDASDVVIGAMLGQKNDKVIYPIYNMSKTLNEAQENYTTTEKELLAVVFAIEKYVSYIVGSKVTIHSDHFAIRYLMVKKDAQPQLIS
        MCDASDVVIGAMLGQKNDKVIYPIYNMSKTLNEAQENYTTTEKELLAVVFAIEKYVSYIVGSKVTIHSDHFAIRYLMVKKDAQPQLIS
Subjt:  MCDASDVVIGAMLGQKNDKVIYPIYNMSKTLNEAQENYTTTEKELLAVVFAIEKYVSYIVGSKVTIHSDHFAIRYLMVKKDAQPQLIS

A0A5D3DS34 Retrovirus-related Pol polyprotein from transposon 17.61.9e-2778.16Show/hide
Query:  MCDASDVVIGAMLGQKNDKVIYPIYNMSKTLNEAQENYTTTEKELLAVVFAIEKYVSYIVGSKVTIHSDHFAIRYLMVKKDAQPQLI
        MCDASDVV+G M GQK DKV  PIY   KTLNEA+ENYTT EKELLA+VFAIEK+ SYIVGSKVTIHSDH AIRYLM KKDA+  LI
Subjt:  MCDASDVVIGAMLGQKNDKVIYPIYNMSKTLNEAQENYTTTEKELLAVVFAIEKYVSYIVGSKVTIHSDHFAIRYLMVKKDAQPQLI

SwissProt top hitse value%identityAlignment
P04323 Retrovirus-related Pol polyprotein from transposon 17.64.6e-1042.86Show/hide
Query:  DASDVVIGAMLGQKNDKVIYPIYNMSKTLNEAQENYTTTEKELLAVVFAIEKYVSYIVGSKVTIHSDHFAIRYLMVKKDAQPQL
        DASDV +GA+L Q      +P+  +S+TLNE + NY+T EKELLA+V+A + +  Y++G    I SDH  + +L   KD   +L
Subjt:  DASDVVIGAMLGQKNDKVIYPIYNMSKTLNEAQENYTTTEKELLAVVFAIEKYVSYIVGSKVTIHSDHFAIRYLMVKKDAQPQL

P10401 Retrovirus-related Pol polyprotein from transposon gypsy2.4e-0634.12Show/hide
Query:  DASDVVIGAMLGQKNDKVIYPIYNMSKTLNEAQENYTTTEKELLAVVFAIEKYVSYIVGSK-VTIHSDHFAIRYLMVKKDAQPQL
        DAS   IGA+L Q+      PI  +S+TL + ++NY T E+ELLA+V+A+ K  +++ GS+ + I +DH  + + +  ++   ++
Subjt:  DASDVVIGAMLGQKNDKVIYPIYNMSKTLNEAQENYTTTEKELLAVVFAIEKYVSYIVGSK-VTIHSDHFAIRYLMVKKDAQPQL

P20825 Retrovirus-related Pol polyprotein from transposon 2972.5e-0839.29Show/hide
Query:  DASDVVIGAMLGQKNDKVIYPIYNMSKTLNEAQENYTTTEKELLAVVFAIEKYVSYIVGSKVTIHSDHFAIRYLMVKKDAQPQL
        DAS++ +GA+L Q      +PI  +S+TLN+ + NY+  EKELLA+V+A + +  Y++G +  I SDH  +R+L   K+   +L
Subjt:  DASDVVIGAMLGQKNDKVIYPIYNMSKTLNEAQENYTTTEKELLAVVFAIEKYVSYIVGSKVTIHSDHFAIRYLMVKKDAQPQL

Q8I7P9 Retrovirus-related Pol polyprotein from transposon opus2.8e-0731.76Show/hide
Query:  DASDVVIGAMLGQKNDKVIYPIYNMSKTLNEAQENYTTTEKELLAVVFAIEKYVSYIVGS-KVTIHSDHFAIRYLMVKKDAQPQL
        DAS+  IGA+L Q +     PI  +S++LN+ +ENY T EKE+LA++++++   +Y+ G+  + +++DH  + + +  ++   +L
Subjt:  DASDVVIGAMLGQKNDKVIYPIYNMSKTLNEAQENYTTTEKELLAVVFAIEKYVSYIVGS-KVTIHSDHFAIRYLMVKKDAQPQL

Q9UR07 Transposon Tf2-11 polyprotein7.6e-0539.66Show/hide
Query:  DASDVVIGAMLGQK-NDKVIYPIYNMSKTLNEAQENYTTTEKELLAVVFAIEKYVSYI
        DASDV +GA+L QK +D   YP+   S  +++AQ NY+ ++KE+LA++ +++ +  Y+
Subjt:  DASDVVIGAMLGQK-NDKVIYPIYNMSKTLNEAQENYTTTEKELLAVVFAIEKYVSYI

Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTGCGACGCAAGTGATGTTGTGATAGGGGCTATGCTTGGTCAAAAGAACGATAAAGTGATCTACCCAATATACAATATGAGTAAGACTTTAAATGAAGCTCAAGAGAA
TTACACAACTACGGAAAAAGAGTTACTCGCAGTAGTATTTGCCATAGAAAAGTACGTGAGTTACATTGTTGGTTCCAAAGTCACGATACACTCTGATCATTTTGCGATCA
GATATTTGATGGTGAAGAAAGATGCCCAGCCGCAGTTAATTAGTTGA
mRNA sequenceShow/hide mRNA sequence
ATGTGCGACGCAAGTGATGTTGTGATAGGGGCTATGCTTGGTCAAAAGAACGATAAAGTGATCTACCCAATATACAATATGAGTAAGACTTTAAATGAAGCTCAAGAGAA
TTACACAACTACGGAAAAAGAGTTACTCGCAGTAGTATTTGCCATAGAAAAGTACGTGAGTTACATTGTTGGTTCCAAAGTCACGATACACTCTGATCATTTTGCGATCA
GATATTTGATGGTGAAGAAAGATGCCCAGCCGCAGTTAATTAGTTGA
Protein sequenceShow/hide protein sequence
MCDASDVVIGAMLGQKNDKVIYPIYNMSKTLNEAQENYTTTEKELLAVVFAIEKYVSYIVGSKVTIHSDHFAIRYLMVKKDAQPQLIS