CuGenDBv2

Gene ID	IVF0021954
Organism	Cucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	DNA-directed RNA polymerases II, IV and V subunit 11-like
Genome location	chr01:30284857..30287179
RNA-Seq Expression	IVF0021954
Synteny	IVF0021954
Gene Ontology terms	GO:0006366 - transcription by RNA polymerase II (biological process) GO:0005665 - RNA polymerase II, core complex (cellular component) GO:0001055 - RNA polymerase II activity (molecular function) GO:0003677 - DNA binding (molecular function) GO:0046983 - protein dimerization activity (molecular function)
InterPro domains	IPR008193 - DNA-directed RNA polymerase Rpb11, 13-16kDa subunit, conserved site IPR009025 - DNA-directed RNA polymerase, RBP11-like dimerisation domain IPR036603 - RNA polymerase, RBP11-like subunit IPR037685 - RNA polymerase RBP11

Homology

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GenBank top hits

e value

%identity

Alignment

XP_004135939.1 DNA-directed RNA polymerases II, IV and V subunit 11 isoform X3 [Cucumis sativus]

7.13e-77

99.14

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Query:  MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFILEREDHTIGNILRMQLHRDDNVLFAGYQLPHPLKYRILVRIQTASQSSPMQAYNQAINDLDKELDV
        MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFILEREDHTIGNILRMQLHRDDNVLFAGYQLPHPLKYRILVRIQTASQSSPMQAYNQAINDLDKELDV
Subjt:  MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFILEREDHTIGNILRMQLHRDDNVLFAGYQLPHPLKYRILVRIQTASQSSPMQAYNQAINDLDKELDV

Query:  LKYELESEISRFSRAY
        LKYELE EISRFSRAY
Subjt:  LKYELESEISRFSRAY

XP_008461312.1 PREDICTED: DNA-directed RNA polymerases II, IV and V subunit 11-like [Cucumis melo]

1.75e-77

100

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Query:  MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFILEREDHTIGNILRMQLHRDDNVLFAGYQLPHPLKYRILVRIQTASQSSPMQAYNQAINDLDKELDV
        MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFILEREDHTIGNILRMQLHRDDNVLFAGYQLPHPLKYRILVRIQTASQSSPMQAYNQAINDLDKELDV
Subjt:  MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFILEREDHTIGNILRMQLHRDDNVLFAGYQLPHPLKYRILVRIQTASQSSPMQAYNQAINDLDKELDV

Query:  LKYELESEISRFSRAY
        LKYELESEISRFSRAY
Subjt:  LKYELESEISRFSRAY

XP_022150995.1 DNA-directed RNA polymerases II, IV and V subunit 11-like [Momordica charantia]

2.30e-73

93.1

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Query:  MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFILEREDHTIGNILRMQLHRDDNVLFAGYQLPHPLKYRILVRIQTASQSSPMQAYNQAINDLDKELDV
        MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFILEREDHT+GNILRMQLHRDDNVLFA YQLPHPLKYRIL+RI TASQSSPMQAYNQA+NDLDKELD 
Subjt:  MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFILEREDHTIGNILRMQLHRDDNVLFAGYQLPHPLKYRILVRIQTASQSSPMQAYNQAINDLDKELDV

Query:  LKYELESEISRFSRAY
        LK+ELESE+SRFSRAY
Subjt:  LKYELESEISRFSRAY

XP_023004699.1 DNA-directed RNA polymerases II, IV and V subunit 11-like isoform X1 [Cucurbita maxima]

3.27e-73

93.97

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Query:  MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFILEREDHTIGNILRMQLHRDDNVLFAGYQLPHPLKYRILVRIQTASQSSPMQAYNQAINDLDKELDV
        MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFI+EREDHTIGNI+RMQLHRDDNVLFA YQLPHPLKYRILVRIQTASQSSPMQAYNQAINDLDKELDV
Subjt:  MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFILEREDHTIGNILRMQLHRDDNVLFAGYQLPHPLKYRILVRIQTASQSSPMQAYNQAINDLDKELDV

Query:  LKYELESEISRFSRAY
        LKYELE   SRFSR+Y
Subjt:  LKYELESEISRFSRAY

XP_038899336.1 DNA-directed RNA polymerases II, IV and V subunit 11-like [Benincasa hispida]

3.40e-75

97.41

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Query:  MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFILEREDHTIGNILRMQLHRDDNVLFAGYQLPHPLKYRILVRIQTASQSSPMQAYNQAINDLDKELDV
        MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFILEREDHTIG+ILRMQLHRDDNVLFAGYQLPHPLKYRILVRIQTASQSSPMQAYNQAINDLDKELDV
Subjt:  MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFILEREDHTIGNILRMQLHRDDNVLFAGYQLPHPLKYRILVRIQTASQSSPMQAYNQAINDLDKELDV

Query:  LKYELESEISRFSRAY
        LKYELE EISRFSR Y
Subjt:  LKYELESEISRFSRAY

TrEMBL top hits

e value

%identity

Alignment

A0A1S3CFN3 DNA-directed RNA polymerases II, IV and V subunit 11-like

4.7e-58

100

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Query:  MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFILEREDHTIGNILRMQLHRDDNVLFAGYQLPHPLKYRILVRIQTASQSSPMQAYNQAINDLDKELDV
        MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFILEREDHTIGNILRMQLHRDDNVLFAGYQLPHPLKYRILVRIQTASQSSPMQAYNQAINDLDKELDV
Subjt:  MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFILEREDHTIGNILRMQLHRDDNVLFAGYQLPHPLKYRILVRIQTASQSSPMQAYNQAINDLDKELDV

Query:  LKYELESEISRFSRAY
        LKYELESEISRFSRAY
Subjt:  LKYELESEISRFSRAY

A0A5D3CJ64 DNA-directed RNA polymerases II, IV and V subunit 11-like

1.0e-52

97.27

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Query:  MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFILEREDHTIGNILRMQLHRDDNVLFAGYQLPHPLKYRILVRIQTASQSSPMQAYNQAINDLDKELDV
        MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFILEREDHTIGNILRMQLHRDDNVLFAGYQLPHPLKYRILVRIQTASQSSPMQAYNQAINDLDKELDV
Subjt:  MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFILEREDHTIGNILRMQLHRDDNVLFAGYQLPHPLKYRILVRIQTASQSSPMQAYNQAINDLDKELDV

Query:  LKYELESEIS
        LKYELE  +S
Subjt:  LKYELESEIS

A0A6J1DA06 DNA-directed RNA polymerases II, IV and V subunit 11-like

6.4e-55

93.1

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Query:  MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFILEREDHTIGNILRMQLHRDDNVLFAGYQLPHPLKYRILVRIQTASQSSPMQAYNQAINDLDKELDV
        MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFILEREDHT+GNILRMQLHRDDNVLFA YQLPHPLKYRIL+RI TASQSSPMQAYNQA+NDLDKELD 
Subjt:  MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFILEREDHTIGNILRMQLHRDDNVLFAGYQLPHPLKYRILVRIQTASQSSPMQAYNQAINDLDKELDV

Query:  LKYELESEISRFSRAY
        LK+ELESE+SRFSRAY
Subjt:  LKYELESEISRFSRAY

A0A6J1H8G6 DNA-directed RNA polymerases II, IV and V subunit 11-like isoform X1

1.1e-54

93.97

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Query:  MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFILEREDHTIGNILRMQLHRDDNVLFAGYQLPHPLKYRILVRIQTASQSSPMQAYNQAINDLDKELDV
        MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFI+EREDHTIGNI+RMQLHRDDNVLFA YQLPHPLKYRILVRIQTASQSSPMQAYNQAINDLDKELDV
Subjt:  MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFILEREDHTIGNILRMQLHRDDNVLFAGYQLPHPLKYRILVRIQTASQSSPMQAYNQAINDLDKELDV

Query:  LKYELESEISRFSRAY
        LKYELE   SRFSR Y
Subjt:  LKYELESEISRFSRAY

A0A6J1KX24 DNA-directed RNA polymerases II, IV and V subunit 11-like isoform X1

8.4e-55

93.97

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Query:  MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFILEREDHTIGNILRMQLHRDDNVLFAGYQLPHPLKYRILVRIQTASQSSPMQAYNQAINDLDKELDV
        MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFI+EREDHTIGNI+RMQLHRDDNVLFA YQLPHPLKYRILVRIQTASQSSPMQAYNQAINDLDKELDV
Subjt:  MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFILEREDHTIGNILRMQLHRDDNVLFAGYQLPHPLKYRILVRIQTASQSSPMQAYNQAINDLDKELDV

Query:  LKYELESEISRFSRAY
        LKYELE   SRFSR+Y
Subjt:  LKYELESEISRFSRAY

SwissProt top hits

e value

%identity

Alignment

O08740 DNA-directed RNA polymerase II subunit RPB11

8.7e-25

45.87

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Query:  MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFILEREDHTIGNILRMQLHRDDNVLFAGYQLPHPLKYRILVRIQTASQSSPMQAYNQAINDLDKELDV
        MN P  +E F++ EG KK++  +DTK+ NA  F + +EDHT+GNI++ QL +D  VLFAGY++PHPL+++I++R+QT    SP +A+  AI DL  EL +
Subjt:  MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFILEREDHTIGNILRMQLHRDDNVLFAGYQLPHPLKYRILVRIQTASQSSPMQAYNQAINDLDKELDV

Query:  LKYELESEI
        L+      I
Subjt:  LKYELESEI

P52435 DNA-directed RNA polymerase II subunit RPB11-a

8.7e-25

48.04

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Query:  MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFILEREDHTIGNILRMQLHRDDNVLFAGYQLPHPLKYRILVRIQTASQSSPMQAYNQAINDLDKELDV
        MN P  +E F++ EG KK++  +DTK+ NA  F + +EDHT+GNI++ QL +D  VLFAGY++PHPL+++I++R+QT    SP +A+  AI DL  EL +
Subjt:  MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFILEREDHTIGNILRMQLHRDDNVLFAGYQLPHPLKYRILVRIQTASQSSPMQAYNQAINDLDKELDV

Query:  LK
        L+
Subjt:  LK

Q32P79 DNA-directed RNA polymerase II subunit RPB11

8.7e-25

48.04

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Query:  MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFILEREDHTIGNILRMQLHRDDNVLFAGYQLPHPLKYRILVRIQTASQSSPMQAYNQAINDLDKELDV
        MN P  +E F++ EG KK++  +DTK+ NA  F + +EDHT+GNI++ QL +D  VLFAGY++PHPL+++I++R+QT    SP +A+  AI DL  EL +
Subjt:  MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFILEREDHTIGNILRMQLHRDDNVLFAGYQLPHPLKYRILVRIQTASQSSPMQAYNQAINDLDKELDV

Query:  LK
        L+
Subjt:  LK

Q38859 DNA-directed RNA polymerases II, IV and V subunit 11

2.3e-49

78.45

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Query:  MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFILEREDHTIGNILRMQLHRDDNVLFAGYQLPHPLKYRILVRIQTASQSSPMQAYNQAINDLDKELDV
        MN P+RYERFVVPEG KKVSY+RDTKI+NAA+F +EREDHTIGNI+RMQLHRD+NVLFAGYQLPHPLKY+I+VRI T SQSSPMQAYNQAINDLDKELD 
Subjt:  MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFILEREDHTIGNILRMQLHRDDNVLFAGYQLPHPLKYRILVRIQTASQSSPMQAYNQAINDLDKELDV

Query:  LKYELESEISRFSRAY
        LK + E+E+++FS  +
Subjt:  LKYELESEISRFSRAY

Q86JJ5 DNA-directed RNA polymerase II subunit rpb11

1.8e-25

45.05

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Query:  MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFILEREDHTIGNILRMQLHRDDNVLFAGYQLPHPLKYRILVRIQTASQSSPMQAYNQAINDLDKELDV
        MN PDR+E FV+P+GAKKV+  RDTKI NA+ F + +EDHTIGN++RMQL  D +++FAGY++PHPL++ + +RIQT + ++P++   +++  L +E   
Subjt:  MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFILEREDHTIGNILRMQLHRDDNVLFAGYQLPHPLKYRILVRIQTASQSSPMQAYNQAINDLDKELDV

Query:  LKYELESEISR
        L+     ++ +
Subjt:  LKYELESEISR

Arabidopsis top hits

e value

%identity

Alignment

AT3G52090.1 DNA-directed RNA polymerase, RBP11-like

1.6e-50

78.45

Show/hide

Query:  MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFILEREDHTIGNILRMQLHRDDNVLFAGYQLPHPLKYRILVRIQTASQSSPMQAYNQAINDLDKELDV
        MN P+RYERFVVPEG KKVSY+RDTKI+NAA+F +EREDHTIGNI+RMQLHRD+NVLFAGYQLPHPLKY+I+VRI T SQSSPMQAYNQAINDLDKELD 
Subjt:  MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFILEREDHTIGNILRMQLHRDDNVLFAGYQLPHPLKYRILVRIQTASQSSPMQAYNQAINDLDKELDV

Query:  LKYELESEISRFSRAY
        LK + E+E+++FS  +
Subjt:  LKYELESEISRFSRAY

AT3G52090.2 DNA-directed RNA polymerase, RBP11-like

9.2e-46

62.33

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Query:  MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFILEREDHTIGNILRMQLHRDDNVLFAGYQLPHPLKYRILVR--------------------------
        MN P+RYERFVVPEG KKVSY+RDTKI+NAA+F +EREDHTIGNI+RMQLHRD+NVLFAGYQLPHPLKY+I+VR                          
Subjt:  MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFILEREDHTIGNILRMQLHRDDNVLFAGYQLPHPLKYRILVR--------------------------

Query:  ----IQTASQSSPMQAYNQAINDLDKELDVLKYELESEISRFSRAY
            I T SQSSPMQAYNQAINDLDKELD LK + E+E+++FS  +
Subjt:  ----IQTASQSSPMQAYNQAINDLDKELDVLKYELESEISRFSRAY

Sequences

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CDS sequence

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ATGAATGTCCCTGATCGCTACGAGCGCTTCGTCGTCCCGGAGGGCGCGAAGAAGGTTTCATACGAGAGAGACACGAAGATCATGAATGCGGCAACATTTATATTGGAGAG
AGAGGATCATACTATCGGAAACATTCTCCGCATGCAACTTCATAGAGATGATAATGTGCTTTTTGCTGGCTACCAGCTTCCTCATCCTCTTAAGTACAGAATACTTGTTC
GGATACAAACTGCTAGCCAGTCTTCACCGATGCAGGCATATAATCAGGCTATCAATGATTTGGATAAGGAGCTCGACGTTTTGAAATACGAGCTTGAGAGTGAGATTTCG
AGGTTCTCGAGGGCCTATTAA

mRNA sequence

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AAGAAAAAGAAAAACGATGAATGTCCCTGATCGCTACGAGCGCTTCGTCGTCCCGGAGGGCGCGAAGAAGGTTTCATACGAGAGAGACACGAAGATCATGAATGCGGCAA
CATTTATATTGGAGAGAGAGGATCATACTATCGGAAACATTCTCCGCATGCAACTTCATAGAGATGATAATGTGCTTTTTGCTGGCTACCAGCTTCCTCATCCTCTTAAG
TACAGAATACTTGTTCGGATACAAACTGCTAGCCAGTCTTCACCGATGCAGGCATATAATCAGGCTATCAATGATTTGGATAAGGAGCTCGACGTTTTGAAATACGAGCT
TGAGAGTGAGATTTCGAGGTTCTCGAGGGCCTATTAATTTCCCATCCAAGAAAACCAAGGGAAAGTTTGAATTCAATAACGACGAGTTGGGAATGGAATGCCAATAATCA
AATTTACGGCCACTTTTTAGTCTGCTTCCTTTTGGCGGTGGGGTGGGAGTTCGCTGTATTCTTTCTTTTAAATGGAAGTTCAAATTTTCATCCAAAAAAGAGAAACCATT
TTAGTTCAGTATTGATTTGAAATAAATATTTTGAACTGTGTATTCCATTTCAATAATACTTCACGAG

Protein sequence

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MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFILEREDHTIGNILRMQLHRDDNVLFAGYQLPHPLKYRILVRIQTASQSSPMQAYNQAINDLDKELDVLKYELESEIS
RFSRAY

IVF0021954 (gene) of Melon (IVF77) v1 genome