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IVF0021961 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0021961
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionRetrotransposable element Tf2
Genome locationchr04:17152436..17152654
RNA-Seq ExpressionIVF0021961
SyntenyIVF0021961
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0050447.1 polyprotein [Cucumis melo var. makuwa]3.06e-1766.67Show/hide
Query:  MSTLAGIRWQQEFNIVVNNVVVNLSDDEDETLAEASSPTSVNNNVVNSDEIADYDPYNGYDINDPYLDMQPY
        MSTLAG   QQEFN VVNNVVVNLSDD D+ L E +SP SVN+     D++ DYDPY G DINDP+LD QPY
Subjt:  MSTLAGIRWQQEFNIVVNNVVVNLSDDEDETLAEASSPTSVNNNVVNSDEIADYDPYNGYDINDPYLDMQPY

KAA0054115.1 Retrotransposable element Tf2 [Cucumis melo var. makuwa]4.35e-1866.67Show/hide
Query:  MSTLAGIRWQQEFNIVVNNVVVNLSDDEDETLAEASSPTSVNNNVVNSDEIADYDPYNGYDINDPYLDMQPY
        MSTLAG   QQEFN VVNNVVVNLSDD D+ L +AS P SVN+     D++ DYDPY G DINDP+LD QPY
Subjt:  MSTLAGIRWQQEFNIVVNNVVVNLSDDEDETLAEASSPTSVNNNVVNSDEIADYDPYNGYDINDPYLDMQPY

KAA0058432.1 polyprotein [Cucumis melo var. makuwa]2.58e-3496.92Show/hide
Query:  RWQQEFNIVVNNVVVNLSDDEDETLAEASSPTSVNNNVVNSDEIADYDPYNGYDINDPYLDMQPY
        R+ QEFNIVVNNVVVNLSDDEDETLAEASSPTSVNNNVVNSDEIADYDPYNGYDINDPYLDMQPY
Subjt:  RWQQEFNIVVNNVVVNLSDDEDETLAEASSPTSVNNNVVNSDEIADYDPYNGYDINDPYLDMQPY

KAA0063832.1 Retrotransposable element Tf2 [Cucumis melo var. makuwa]2.74e-1768.06Show/hide
Query:  MSTLAGIRWQQEFNIVVNNVVVNLSDDEDETLAEASSPTSVNNNVVNSDEIADYDPYNGYDINDPYLDMQPY
        MSTLAG   QQEFN VVNNVVVNLSDD D+ L E  SP SVNN    +D+  DYDPY G DINDP+LD QPY
Subjt:  MSTLAGIRWQQEFNIVVNNVVVNLSDDEDETLAEASSPTSVNNNVVNSDEIADYDPYNGYDINDPYLDMQPY

KAA0066200.1 Retrotransposable element Tf2 [Cucumis melo var. makuwa]6.70e-1880.36Show/hide
Query:  MSTLAGIRWQQEFNIVVNNVVVNLSDDEDETLAEASSPTSVNNNVVNSDEIADYDP
        MSTLA    QQEFN VVNNVVVNLSDD+DE  AEASSP SVN++VVNSDEIADYDP
Subjt:  MSTLAGIRWQQEFNIVVNNVVVNLSDDEDETLAEASSPTSVNNNVVNSDEIADYDP

TrEMBL top hitse value%identityAlignment
A0A5A7U7T9 Polyprotein4.9e-1366.67Show/hide
Query:  MSTLAGIRWQQEFNIVVNNVVVNLSDDEDETLAEASSPTSVNNNVVNSDEIADYDPYNGYDINDPYLDMQPY
        MSTLAG   QQEFN VVNNVVVNLSDD D+ L E +SP SVN    + D++ DYDPY G DINDP+LD QPY
Subjt:  MSTLAGIRWQQEFNIVVNNVVVNLSDDEDETLAEASSPTSVNNNVVNSDEIADYDPYNGYDINDPYLDMQPY

A0A5A7V6D1 Retrotransposable element Tf23.8e-1368.06Show/hide
Query:  MSTLAGIRWQQEFNIVVNNVVVNLSDDEDETLAEASSPTSVNNNVVNSDEIADYDPYNGYDINDPYLDMQPY
        MSTLAG   QQEFN VVNNVVVNLSDD D+ L E  SP SVN    N+D+  DYDPY G DINDP+LD QPY
Subjt:  MSTLAGIRWQQEFNIVVNNVVVNLSDDEDETLAEASSPTSVNNNVVNSDEIADYDPYNGYDINDPYLDMQPY

A0A5A7VGC4 Retrotransposable element Tf21.7e-1380.36Show/hide
Query:  MSTLAGIRWQQEFNIVVNNVVVNLSDDEDETLAEASSPTSVNNNVVNSDEIADYDP
        MSTLA    QQEFN VVNNVVVNLSDD+DE  AEASSP SVN++VVNSDEIADYDP
Subjt:  MSTLAGIRWQQEFNIVVNNVVVNLSDDEDETLAEASSPTSVNNNVVNSDEIADYDP

A0A5A7VIK9 Retrotransposable element Tf24.9e-1368.06Show/hide
Query:  MSTLAGIRWQQEFNIVVNNVVVNLSDDEDETLAEASSPTSVNNNVVNSDEIADYDPYNGYDINDPYLDMQPY
        MSTLAG   QQEFN VVNNVVVNLSDD D+ L E  SP SVN    N D++ DYDPY G DINDP+LD QPY
Subjt:  MSTLAGIRWQQEFNIVVNNVVVNLSDDEDETLAEASSPTSVNNNVVNSDEIADYDPYNGYDINDPYLDMQPY

A0A5D3BCI3 Polyprotein1.7e-2696.92Show/hide
Query:  RWQQEFNIVVNNVVVNLSDDEDETLAEASSPTSVNNNVVNSDEIADYDPYNGYDINDPYLDMQPY
        R+ QEFNIVVNNVVVNLSDDEDETLAEASSPTSVNNNVVNSDEIADYDPYNGYDINDPYLDMQPY
Subjt:  RWQQEFNIVVNNVVVNLSDDEDETLAEASSPTSVNNNVVNSDEIADYDPYNGYDINDPYLDMQPY

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCAACCCTTGCGGGAATAAGGTGGCAACAGGAGTTCAACATTGTTGTCAATAACGTTGTGGTAAACCTGTCCGACGACGAGGACGAAACCCTGGCAGAAGCCTCCTC
TCCTACATCAGTCAACAATAATGTCGTAAACAGCGATGAGATTGCCGATTACGATCCATATAACGGATACGACATCAACGACCCATATTTAGACATGCAACCTTACTAG
mRNA sequenceShow/hide mRNA sequence
ATGTCAACCCTTGCGGGAATAAGGTGGCAACAGGAGTTCAACATTGTTGTCAATAACGTTGTGGTAAACCTGTCCGACGACGAGGACGAAACCCTGGCAGAAGCCTCCTC
TCCTACATCAGTCAACAATAATGTCGTAAACAGCGATGAGATTGCCGATTACGATCCATATAACGGATACGACATCAACGACCCATATTTAGACATGCAACCTTACTAG
Protein sequenceShow/hide protein sequence
MSTLAGIRWQQEFNIVVNNVVVNLSDDEDETLAEASSPTSVNNNVVNSDEIADYDPYNGYDINDPYLDMQPY