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IVF0021981 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0021981
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionRetrotransposon protein
Genome locationchr09:6436385..6436738
RNA-Seq ExpressionIVF0021981
SyntenyIVF0021981
Gene Ontology termsGO:0000463 - maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) (biological process)
GO:0006412 - translation (biological process)
GO:0022625 - cytosolic large ribosomal subunit (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
GO:0046872 - metal ion binding (molecular function)
InterPro domainsIPR024752 - Myb/SANT-like domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0041970.1 putative nuclease HARBI1 [Cucumis melo var. makuwa]9.14e-4087.65Show/hide
Query:  DNGTFKPEYLVQVQKLMKEKIHGSNIQVTPNLESRVKILKKQYTVIAEMIGPACSGFGWNEERKCIEAEKSVFYDWVKVRR
        DNGTFK  YLVQVQKLMKEKI  SNIQVTPNLESRVKILKKQYTVIA+M+GPAC+ FGWNEERKCIEAEKSVF DWVKV R
Subjt:  DNGTFKPEYLVQVQKLMKEKIHGSNIQVTPNLESRVKILKKQYTVIAEMIGPACSGFGWNEERKCIEAEKSVFYDWVKVRR

KAA0050106.1 retrotransposon protein [Cucumis melo var. makuwa]1.41e-4187.8Show/hide
Query:  ADNGTFKPEYLVQVQKLMKEKIHGSNIQVTPNLESRVKILKKQYTVIAEMIGPACSGFGWNEERKCIEAEKSVFYDWVKVRR
        ADNGTFK  YLVQVQKLMKEKI GSNIQVTPNL+SRVKILKKQY  IAEM+GPACSGFGWNEERKCIEAEKSVF DWVK  R
Subjt:  ADNGTFKPEYLVQVQKLMKEKIHGSNIQVTPNLESRVKILKKQYTVIAEMIGPACSGFGWNEERKCIEAEKSVFYDWVKVRR

KGN51053.1 hypothetical protein Csa_009100 [Cucumis sativus]8.23e-4374.04Show/hide
Query:  MESTNSKTTKY---------W-ADNGTFKPEYLVQVQKLMKEKIHGSNIQVTPNLESRVKILKKQYTVIAEMIGPACSGFGWNEERKCIEAEKSVFYDWV
        M STNSK TK+         W A NGTFKP YLVQVQKLMKEKI GSNIQVTPNLE RVKILKKQYT I EM+GP+CS FGWNE+RKCIEAEK VF D V
Subjt:  MESTNSKTTKY---------W-ADNGTFKPEYLVQVQKLMKEKIHGSNIQVTPNLESRVKILKKQYTVIAEMIGPACSGFGWNEERKCIEAEKSVFYDWV

Query:  KVRR
        KVR+
Subjt:  KVRR

TYJ96933.1 retrotransposon protein [Cucumis melo var. makuwa]1.25e-3784.81Show/hide
Query:  ADNGTFKPEYLVQVQKLMKEKIHGSNIQVTPNLESRVKILKKQYTVIAEMIGPACSGFGWNEERKCIEAEKSVFYDWVK
        A+N TFKP YLVQVQKLMKEKI  SNIQVT NLESRVK LKKQYT IA+M+GPACS FGWNEERKCIEAEKSVF DWVK
Subjt:  ADNGTFKPEYLVQVQKLMKEKIHGSNIQVTPNLESRVKILKKQYTVIAEMIGPACSGFGWNEERKCIEAEKSVFYDWVK

XP_031741735.1 uncharacterized protein At2g29880-like [Cucumis sativus]1.16e-3974.26Show/hide
Query:  MESTNSKTTKY---------W-ADNGTFKPEYLVQVQKLMKEKIHGSNIQVTPNLESRVKILKKQYTVIAEMIGPACSGFGWNEERKCIEAEKSVFYDWV
        M STNSK TK+         W A NGTFKP YLVQVQKLMKEKI GSNIQVTPNLE RVKILKKQYT I EM+GP+CS FGWNE+RKCIEAEK VF D V
Subjt:  MESTNSKTTKY---------W-ADNGTFKPEYLVQVQKLMKEKIHGSNIQVTPNLESRVKILKKQYTVIAEMIGPACSGFGWNEERKCIEAEKSVFYDWV

Query:  K
        K
Subjt:  K

TrEMBL top hitse value%identityAlignment
A0A0A0KNB4 Uncharacterized protein1.1e-3174.04Show/hide
Query:  MESTNSKTTKY---------W-ADNGTFKPEYLVQVQKLMKEKIHGSNIQVTPNLESRVKILKKQYTVIAEMIGPACSGFGWNEERKCIEAEKSVFYDWV
        M STNSK TK+         W A NGTFKP YLVQVQKLMKEKI GSNIQVTPNLE RVKILKKQYT I EM+GP+CS FGWNE+RKCIEAEK VF D V
Subjt:  MESTNSKTTKY---------W-ADNGTFKPEYLVQVQKLMKEKIHGSNIQVTPNLESRVKILKKQYTVIAEMIGPACSGFGWNEERKCIEAEKSVFYDWV

Query:  KVRR
        KVR+
Subjt:  KVRR

A0A5A7SW62 Myb_DNA-bind_3 domain-containing protein6.8e-3165.79Show/hide
Query:  MESTNSKTTKYW-----------------------ADNGTFKPEYLVQVQKLMKEKIHGSNIQVTPNLESRVKILKKQYTVIAEMIGPACSGFGWNEERK
        M S NSK TK+W                        DNGTFKP YLVQVQKLMKEKI  SNIQVTPNLES VKILKKQYT IAEM+GP CSGF WN+ERK
Subjt:  MESTNSKTTKYW-----------------------ADNGTFKPEYLVQVQKLMKEKIHGSNIQVTPNLESRVKILKKQYTVIAEMIGPACSGFGWNEERK

Query:  CIEAEKSVFYDWVK
        CIEAEKSV  DWVK
Subjt:  CIEAEKSVFYDWVK

A0A5A7TF70 Putative nuclease HARBI11.1e-3187.65Show/hide
Query:  DNGTFKPEYLVQVQKLMKEKIHGSNIQVTPNLESRVKILKKQYTVIAEMIGPACSGFGWNEERKCIEAEKSVFYDWVKVRR
        DNGTFK  YLVQVQKLMKEKI  SNIQVTPNLESRVKILKKQYTVIA+M+GPAC+ FGWNEERKCIEAEKSVF DWVKV R
Subjt:  DNGTFKPEYLVQVQKLMKEKIHGSNIQVTPNLESRVKILKKQYTVIAEMIGPACSGFGWNEERKCIEAEKSVFYDWVKVRR

A0A5A7U7F7 Retrotransposon protein3.3e-3369.83Show/hide
Query:  MESTNSKTTKY---------------------W-ADNGTFKPEYLVQVQKLMKEKIHGSNIQVTPNLESRVKILKKQYTVIAEMIGPACSGFGWNEERKC
        M STNSK TK+                     W ADNGTFK  YLVQVQKLMKEKI GSNIQVTPNL+SRVKILKKQY  IAEM+GPACSGFGWNEERKC
Subjt:  MESTNSKTTKY---------------------W-ADNGTFKPEYLVQVQKLMKEKIHGSNIQVTPNLESRVKILKKQYTVIAEMIGPACSGFGWNEERKC

Query:  IEAEKSVFYDWVKVRR
        IEAEKSVF DWVK  R
Subjt:  IEAEKSVFYDWVKVRR

A0A5D3DTL0 Myb_DNA-bind_3 domain-containing protein6.8e-3165.79Show/hide
Query:  MESTNSKTTKYW-----------------------ADNGTFKPEYLVQVQKLMKEKIHGSNIQVTPNLESRVKILKKQYTVIAEMIGPACSGFGWNEERK
        M S NSK TK+W                        DNGTFKP YLVQVQKLMKEKI  SNIQVTPNLES VKILKKQYT IAEM+GP CSGF WN+ERK
Subjt:  MESTNSKTTKYW-----------------------ADNGTFKPEYLVQVQKLMKEKIHGSNIQVTPNLESRVKILKKQYTVIAEMIGPACSGFGWNEERK

Query:  CIEAEKSVFYDWVK
        CIEAEKSV  DWVK
Subjt:  CIEAEKSVFYDWVK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAATCGACAAATTCAAAAACCACTAAGTATTGGGCTGATAATGGAACATTCAAACCGGAATATTTGGTACAAGTACAAAAACTAATGAAAGAAAAAATTCATGGAAG
CAACATACAAGTGACTCCAAATCTAGAGTCGAGAGTAAAAATTTTAAAGAAGCAGTACACTGTCATAGCAGAGATGATAGGGCCAGCTTGTAGTGGGTTTGGCTGGAATG
AGGAACGAAAGTGCATTGAGGCAGAGAAATCTGTGTTCTATGACTGGGTTAAGGTAAGAAGATGA
mRNA sequenceShow/hide mRNA sequence
ATGGAATCGACAAATTCAAAAACCACTAAGTATTGGGCTGATAATGGAACATTCAAACCGGAATATTTGGTACAAGTACAAAAACTAATGAAAGAAAAAATTCATGGAAG
CAACATACAAGTGACTCCAAATCTAGAGTCGAGAGTAAAAATTTTAAAGAAGCAGTACACTGTCATAGCAGAGATGATAGGGCCAGCTTGTAGTGGGTTTGGCTGGAATG
AGGAACGAAAGTGCATTGAGGCAGAGAAATCTGTGTTCTATGACTGGGTTAAGGTAAGAAGATGA
Protein sequenceShow/hide protein sequence
MESTNSKTTKYWADNGTFKPEYLVQVQKLMKEKIHGSNIQVTPNLESRVKILKKQYTVIAEMIGPACSGFGWNEERKCIEAEKSVFYDWVKVRR