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IVF0021984 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0021984
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionRetrotrans_gag domain-containing protein
Genome locationchr05:21070156..21070769
RNA-Seq ExpressionIVF0021984
SyntenyIVF0021984
Gene Ontology termsGO:0006278 - RNA-dependent DNA biosynthetic process (biological process)
GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0036933.1 uncharacterized protein E6C27_scaffold86G00060 [Cucumis melo var. makuwa]2.64e-5661.29Show/hide
Query:  MAQDRLDLQRMEKKSSESFKEYAQQWRDMAAEVQPPLTDKEMTSMFMNTLRAPFYERMIG----------------------------------------
        MA DRLDLQRMEKKSSESFKEYAQ+WRDMAAEVQPPLTDKEMTSMFMNTLRAPFYERMIG                                        
Subjt:  MAQDRLDLQRMEKKSSESFKEYAQQWRDMAAEVQPPLTDKEMTSMFMNTLRAPFYERMIG----------------------------------------

Query:  -----------------KHKSIFGQRKYEQNFLSYISNVFHIPYNRYVPAHTVSETPKPVNLNSPQPFVQGQGSKTNSFPFFFDEV
                         KHKSIFG RKYEQNF SYI+NV HIPYN YVPAHTVSETPKPVN NSP+PFVQGQGSKTNS  + FD +
Subjt:  -----------------KHKSIFGQRKYEQNFLSYISNVFHIPYNRYVPAHTVSETPKPVNLNSPQPFVQGQGSKTNSFPFFFDEV

KAA0036942.1 uncharacterized protein E6C27_scaffold86G00180 [Cucumis melo var. makuwa]1.41e-5661.29Show/hide
Query:  MAQDRLDLQRMEKKSSESFKEYAQQWRDMAAEVQPPLTDKEMTSMFMNTLRAPFYERMIG----------------------------------------
        MA DRLDLQR+EKKSSESFKEYAQ+WRDM AEVQPPLTDKEMTSMFMNTLRAPFYERMIG                                        
Subjt:  MAQDRLDLQRMEKKSSESFKEYAQQWRDMAAEVQPPLTDKEMTSMFMNTLRAPFYERMIG----------------------------------------

Query:  -----------------KHKSIFGQRKYEQNFLSYISNVFHIPYNRYVPAHTVSETPKPVNLNSPQPFVQGQGSKTNSFPFFFDEV
                         KHKSIFGQRKYEQNF SYISNV HIPYN YVPAHTVSETPKPVN NSP+PFVQGQGSKTNS  + FD +
Subjt:  -----------------KHKSIFGQRKYEQNFLSYISNVFHIPYNRYVPAHTVSETPKPVNLNSPQPFVQGQGSKTNSFPFFFDEV

KAA0036957.1 RNA-directed DNA polymerase (Reverse transcriptase), Ribonuclease H-like protein [Cucumis melo var. makuwa]5.64e-5761.83Show/hide
Query:  MAQDRLDLQRMEKKSSESFKEYAQQWRDMAAEVQPPLTDKEMTSMFMNTLRAPFYERMIG----------------------------------------
        MA D LDLQRMEKKSSESFKEYAQ+WRDMAAEVQPPLTDKEMTSMFMNTLRAPFYERMIG                                        
Subjt:  MAQDRLDLQRMEKKSSESFKEYAQQWRDMAAEVQPPLTDKEMTSMFMNTLRAPFYERMIG----------------------------------------

Query:  -----------------KHKSIFGQRKYEQNFLSYISNVFHIPYNRYVPAHTVSETPKPVNLNSPQPFVQGQGSKTNSFPFFFDEV
                         KHKSIFGQRKYEQNF SYISNV HIPYN YVPAHTVSETPKPVN NSP+PFVQGQGSKTNS  + FD +
Subjt:  -----------------KHKSIFGQRKYEQNFLSYISNVFHIPYNRYVPAHTVSETPKPVNLNSPQPFVQGQGSKTNSFPFFFDEV

KAA0067953.1 RNA-directed DNA polymerase (Reverse transcriptase), Ribonuclease H-like protein [Cucumis melo var. makuwa]2.48e-6286.05Show/hide
Query:  MAQDRLDLQRMEKKSSESFKEYAQQWRDMAAEVQPPLTDKEMTSMFMNTLRAPFYERMIGKHKSIFGQRKYEQNFLSYISNVFHIPYNRYVPAHTVSETP
        MA DRLDLQ+MEKKSSESFKEYAQ+WRDMAAEVQPPLTDKEMTSMFMNTLRAPFYERMIGKHKSIFGQRKYEQNF SYISNV +IPYN YV AHTVSETP
Subjt:  MAQDRLDLQRMEKKSSESFKEYAQQWRDMAAEVQPPLTDKEMTSMFMNTLRAPFYERMIGKHKSIFGQRKYEQNFLSYISNVFHIPYNRYVPAHTVSETP

Query:  KPVNLNSPQPFVQGQGSKTNSFPFFFDEV
        KPVN NSPQPFV+ QGSK NS  + FD +
Subjt:  KPVNLNSPQPFVQGQGSKTNSFPFFFDEV

TYK21788.1 uncharacterized protein E5676_scaffold1721G00440 [Cucumis melo var. makuwa]1.77e-5871.25Show/hide
Query:  MAQDRLDLQRMEKKSSESFKEYAQQWRDMAAEVQPPLTDKEMTSMFMNTLRAPFYERMI-------------------------------GKHKSIFGQR
        MA DRLDLQRMEKKSSESFKEYAQ+WRDMAAEVQPPLTDKEMTSMFMNTLRAPFYERMI                               GKHKSIFGQR
Subjt:  MAQDRLDLQRMEKKSSESFKEYAQQWRDMAAEVQPPLTDKEMTSMFMNTLRAPFYERMI-------------------------------GKHKSIFGQR

Query:  KYEQNFLSYISNVFHIPYNRYVPAHTVSETPKPVNLNSPQPFVQGQGSKTNSFPFFFDEV
        KYEQNF SYISNV +IPYN YV AHTVSETPKPVN NSPQPFVQ QGSKTNS  + FD +
Subjt:  KYEQNFLSYISNVFHIPYNRYVPAHTVSETPKPVNLNSPQPFVQGQGSKTNSFPFFFDEV

TrEMBL top hitse value%identityAlignment
A0A5A7T0H8 Uncharacterized protein5.1e-4961.29Show/hide
Query:  MAQDRLDLQRMEKKSSESFKEYAQQWRDMAAEVQPPLTDKEMTSMFMNTLRAPFYERMI-----------------------------------------
        MA DRLDLQR+EKKSSESFKEYAQ+WRDM AEVQPPLTDKEMTSMFMNTLRAPFYERMI                                         
Subjt:  MAQDRLDLQRMEKKSSESFKEYAQQWRDMAAEVQPPLTDKEMTSMFMNTLRAPFYERMI-----------------------------------------

Query:  ----------------GKHKSIFGQRKYEQNFLSYISNVFHIPYNRYVPAHTVSETPKPVNLNSPQPFVQGQGSKTNSFPFFFDEV
                        GKHKSIFGQRKYEQNF SYISNV HIPYN YVPAHTVSETPKPVN NSP+PFVQGQGSKTNS  + FD +
Subjt:  ----------------GKHKSIFGQRKYEQNFLSYISNVFHIPYNRYVPAHTVSETPKPVNLNSPQPFVQGQGSKTNSFPFFFDEV

A0A5A7T1W2 Retrotrans_gag domain-containing protein8.7e-4961.29Show/hide
Query:  MAQDRLDLQRMEKKSSESFKEYAQQWRDMAAEVQPPLTDKEMTSMFMNTLRAPFYERMI-----------------------------------------
        MA DRLDLQRMEKKSSESFKEYAQ+WRDMAAEVQPPLTDKEMTSMFMNTLRAPFYERMI                                         
Subjt:  MAQDRLDLQRMEKKSSESFKEYAQQWRDMAAEVQPPLTDKEMTSMFMNTLRAPFYERMI-----------------------------------------

Query:  ----------------GKHKSIFGQRKYEQNFLSYISNVFHIPYNRYVPAHTVSETPKPVNLNSPQPFVQGQGSKTNSFPFFFDEV
                        GKHKSIFG RKYEQNF SYI+NV HIPYN YVPAHTVSETPKPVN NSP+PFVQGQGSKTNS  + FD +
Subjt:  ----------------GKHKSIFGQRKYEQNFLSYISNVFHIPYNRYVPAHTVSETPKPVNLNSPQPFVQGQGSKTNSFPFFFDEV

A0A5A7T5W6 RNA-directed DNA polymerase (Reverse transcriptase), Ribonuclease H-like protein2.3e-4961.83Show/hide
Query:  MAQDRLDLQRMEKKSSESFKEYAQQWRDMAAEVQPPLTDKEMTSMFMNTLRAPFYERMI-----------------------------------------
        MA D LDLQRMEKKSSESFKEYAQ+WRDMAAEVQPPLTDKEMTSMFMNTLRAPFYERMI                                         
Subjt:  MAQDRLDLQRMEKKSSESFKEYAQQWRDMAAEVQPPLTDKEMTSMFMNTLRAPFYERMI-----------------------------------------

Query:  ----------------GKHKSIFGQRKYEQNFLSYISNVFHIPYNRYVPAHTVSETPKPVNLNSPQPFVQGQGSKTNSFPFFFDEV
                        GKHKSIFGQRKYEQNF SYISNV HIPYN YVPAHTVSETPKPVN NSP+PFVQGQGSKTNS  + FD +
Subjt:  ----------------GKHKSIFGQRKYEQNFLSYISNVFHIPYNRYVPAHTVSETPKPVNLNSPQPFVQGQGSKTNSFPFFFDEV

A0A5A7VIM6 RNA-directed DNA polymerase (Reverse transcriptase), Ribonuclease H-like protein5.3e-5481.75Show/hide
Query:  MAQDRLDLQRMEKKSSESFKEYAQQWRDMAAEVQPPLTDKEMTSMFMNTLRAPFYERMIGKHKSIFGQRKYEQNFLSYISNVFHIPYNRYVPAHTVSETP
        MA DRLDLQ+MEKKSSESFKEYAQ+WRDMAAEVQPPLTDKEMTSMFMNTLRAPFYERMIGKHKSIFGQRKYEQNF SYISNV +IPYN YV AHTVSETP
Subjt:  MAQDRLDLQRMEKKSSESFKEYAQQWRDMAAEVQPPLTDKEMTSMFMNTLRAPFYERMIGKHKSIFGQRKYEQNFLSYISNVFHIPYNRYVPAHTVSETP

Query:  KPVNLNSPQPFVQGQGSKTNSFPFFFDEVGSDFFLLI
        KPVN NSPQPFV+ QGSK NS  + FD +   +  L+
Subjt:  KPVNLNSPQPFVQGQGSKTNSFPFFFDEVGSDFFLLI

A0A5D3DEB3 Retrotrans_gag domain-containing protein1.2e-5071.25Show/hide
Query:  MAQDRLDLQRMEKKSSESFKEYAQQWRDMAAEVQPPLTDKEMTSMFMNTLRAPFYERMI-------------------------------GKHKSIFGQR
        MA DRLDLQRMEKKSSESFKEYAQ+WRDMAAEVQPPLTDKEMTSMFMNTLRAPFYERMI                               GKHKSIFGQR
Subjt:  MAQDRLDLQRMEKKSSESFKEYAQQWRDMAAEVQPPLTDKEMTSMFMNTLRAPFYERMI-------------------------------GKHKSIFGQR

Query:  KYEQNFLSYISNVFHIPYNRYVPAHTVSETPKPVNLNSPQPFVQGQGSKTNSFPFFFDEV
        KYEQNF SYISNV +IPYN YV AHTVSETPKPVN NSPQPFVQ QGSKTNS  + FD +
Subjt:  KYEQNFLSYISNVFHIPYNRYVPAHTVSETPKPVNLNSPQPFVQGQGSKTNSFPFFFDEV

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTCAAGATCGTTTAGACTTGCAACGGATGGAGAAGAAGAGTTCGGAAAGTTTCAAAGAATATGCTCAACAATGGAGAGATATGGCTGCCGAGGTTCAACCACCGTT
AACAGACAAAGAAATGACATCTATGTTTATGAATACCTTGCGGGCTCCATTCTATGAGCGAATGATTGGGAAGCACAAATCAATTTTTGGTCAGAGAAAATATGAGCAAA
ACTTTCTGTCATATATAAGCAATGTCTTTCATATCCCTTATAATAGATATGTACCAGCCCATACTGTCTCTGAAACTCCAAAACCCGTTAACTTAAATTCTCCTCAACCA
TTTGTACAGGGTCAAGGTAGCAAAACCAATTCATTTCCTTTTTTCTTTGATGAAGTGGGCTCTGATTTCTTTCTTTTGATCCTTTCGGACCGGACCAGGGTTACGTCTTC
CTAA
mRNA sequenceShow/hide mRNA sequence
ATGGCTCAAGATCGTTTAGACTTGCAACGGATGGAGAAGAAGAGTTCGGAAAGTTTCAAAGAATATGCTCAACAATGGAGAGATATGGCTGCCGAGGTTCAACCACCGTT
AACAGACAAAGAAATGACATCTATGTTTATGAATACCTTGCGGGCTCCATTCTATGAGCGAATGATTGGGAAGCACAAATCAATTTTTGGTCAGAGAAAATATGAGCAAA
ACTTTCTGTCATATATAAGCAATGTCTTTCATATCCCTTATAATAGATATGTACCAGCCCATACTGTCTCTGAAACTCCAAAACCCGTTAACTTAAATTCTCCTCAACCA
TTTGTACAGGGTCAAGGTAGCAAAACCAATTCATTTCCTTTTTTCTTTGATGAAGTGGGCTCTGATTTCTTTCTTTTGATCCTTTCGGACCGGACCAGGGTTACGTCTTC
CTAA
Protein sequenceShow/hide protein sequence
MAQDRLDLQRMEKKSSESFKEYAQQWRDMAAEVQPPLTDKEMTSMFMNTLRAPFYERMIGKHKSIFGQRKYEQNFLSYISNVFHIPYNRYVPAHTVSETPKPVNLNSPQP
FVQGQGSKTNSFPFFFDEVGSDFFLLILSDRTRVTSS